mRNA_L-elsbetiae_contig8453.17462.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8453.17462.1
Unique NamemRNA_L-elsbetiae_contig8453.17462.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8453.17462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8453contigL-elsbetiae_contig8453:8190..8725 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size536
Cds size324
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816927.205249-CDS-L-elsbetiae_contig8453:8189..85131622816927.205249-CDS-L-elsbetiae_contig8453:8189..8513Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8453 8190..8513 +
1691683918.4775-CDS-L-elsbetiae_contig8453:8189..85131691683918.4775-CDS-L-elsbetiae_contig8453:8189..8513Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8453 8190..8513 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816927.2171595-UTR-L-elsbetiae_contig8453:8513..87251622816927.2171595-UTR-L-elsbetiae_contig8453:8513..8725Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8453 8514..8725 +
1691683918.4883795-UTR-L-elsbetiae_contig8453:8513..87251691683918.4883795-UTR-L-elsbetiae_contig8453:8513..8725Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8453 8514..8725 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8453.17462.1prot_L-elsbetiae_contig8453.17462.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8453 8190..8513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8453.17462.1

>prot_L-elsbetiae_contig8453.17462.1 ID=prot_L-elsbetiae_contig8453.17462.1|Name=mRNA_L-elsbetiae_contig8453.17462.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
MFFFFFFLPIIGPCRLPPWPPSSTSTLARRPNRGHIGGGVCVGACWRGQG
CPLACACAWPHFCCSGEQVCGSTSRSSVTETYMQVAVILEPPPKKNVPKM
VVLDDGG*
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mRNA from alignment at L-elsbetiae_contig8453:8190..8725+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8453.17462.1 ID=mRNA_L-elsbetiae_contig8453.17462.1|Name=mRNA_L-elsbetiae_contig8453.17462.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=536bp|location=Sequence derived from alignment at L-elsbetiae_contig8453:8190..8725+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTTTTTTTTTTTTTTTTCTGCCCATTATTGGACCTTGTCGTCTGCC
CCCCTGGCCCCCATCCTCCACTTCTACTCTAGCTAGACGACCCAACCGGG
GTCACATAGGAGGGGGGGTATGTGTAGGGGCGTGTTGGCGTGGTCAAGGG
TGTCCCCTCGCGTGTGCGTGCGCGTGGCCGCATTTTTGTTGCTCGGGAGA
ACAAGTGTGTGGGAGCACCAGCCGGTCTTCTGTAACAGAAACATACATGC
AGGTGGCGGTTATTTTGGAGCCGCCTCCGAAGAAGAACGTGCCCAAAATG
GTGGTACTCGATGATGGTGGTTAACCCCTTTGCAACGCCAAGAAATATTT
ATTTAATTGCAAGGCTGTGATTGGATCTTACTCGCACAGTCCCTGATGCA
GACTCCTTCTCTATAGTCCCTATCATTTGGCCCCAAATCGATTTCGGGGC
CAAATGATATACCTTTACAAGATCACCCTTCGGAGCGAGCTCATGAGAGC
ACAGGGGATGGGGGTGATGCAAGACGAAAGAAAAAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8453:8190..8725+

>mRNA_L-elsbetiae_contig8453.17462.1 ID=mRNA_L-elsbetiae_contig8453.17462.1|Name=mRNA_L-elsbetiae_contig8453.17462.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig8453:8190..8725+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTTTTTTTTTTTTTTTTCTGCCCATTATTGGACCTTGTCGTCTGCC
CCCCTGGCCCCCATCCTCCACTTCTACTCTAGCTAGACGACCCAACCGGG
GTCACATAGGAGGGGGGGTATGTGTAGGGGCGTGTTGGCGTGGTCAAGGG
TGTCCCCTCGCGTGTGCGTGCGCGTGGCCGCATTTTTGTTGCTCGGGAGA
ACAAGTGTGTGGGAGCACCAGCCGGTCTTCTGTAACAGAAACATACATGC
AGGTGGCGGTTATTTTGGAGCCGCCTCCGAAGAAGAACGTGCCCAAAATG
GTGGTACTCGATGATGGTGGTTAAATGTTTTTTTTTTTTTTTTTTCTGCC
CATTATTGGACCTTGTCGTCTGCCCCCCTGGCCCCCATCCTCCACTTCTA
CTCTAGCTAGACGACCCAACCGGGGTCACATAGGAGGGGGGGTATGTGTA
GGGGCGTGTTGGCGTGGTCAAGGGTGTCCCCTCGCGTGTGCGTGCGCGTG
GCCGCATTTTTGTTGCTCGGGAGAACAAGTGTGTGGGAGCACCAGCCGGT
CTTCTGTAACAGAAACATACATGCAGGTGGCGGTTATTTTGGAGCCGCCT
CCGAAGAAGAACGTGCCCAAAATGGTGGTACTCGATGATGGTGGTTAA
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