mRNA_L-elsbetiae_contig845.17458.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig845.17458.1
Unique NamemRNA_L-elsbetiae_contig845.17458.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig845.17458.1 vs. uniprot
Match: D7G5G4_ECTSI (Lipid_desat domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G4_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 3.810e-44
Identity = 62/95 (65.26%), Postives = 81/95 (85.26%), Query Frame = 3 
Query:    3 ALLRLADPGLFGVALGVAFLFGSLMSNEFHKYSHMVDPPPLAQAFQGLGLSISRKQHGRHHSGTFDEKYCLVSGICNGPMDNFGIFRFLERAVYQ 287
            ALLRL +PG  GVALGVAFL GSLMSNEFH+++HM  PPP+ +A Q  G+++SRK+HGRHHS  F+EKYC+V+G+CNGP+D+F +FRF+ER VY+
Sbjct:  103 ALLRLVNPGPAGVALGVAFLVGSLMSNEFHRFAHMTSPPPIVRALQKFGVTVSRKEHGRHHSSPFEEKYCIVTGVCNGPLDHFRVFRFMERVVYE 197
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BLAST of mRNA_L-elsbetiae_contig845.17458.1 vs. uniprot
Match: A0A6H5KFV9_9PHAE (Lipid_desat domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFV9_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 2.770e-42
Identity = 63/95 (66.32%), Postives = 80/95 (84.21%), Query Frame = 3 
Query:    3 ALLRLADPGLFGVALGVAFLFGSLMSNEFHKYSHMVDPPPLAQAFQGLGLSISRKQHGRHHSGTFDEKYCLVSGICNGPMDNFGIFRFLERAVYQ 287
            ALLRL +PG  GVALGV FL GSLMSNEFH+++HM  PPPL +A Q  G+++SRK+HGRHHS  F+EKYC+V+GICNGP+D+F +FRF+ER VY+
Sbjct:  268 ALLRLVNPGPAGVALGVTFLVGSLMSNEFHRFAHMTSPPPLVRALQKFGVTVSRKEHGRHHSSPFEEKYCIVTGICNGPLDHFRVFRFMERVVYE 362
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BLAST of mRNA_L-elsbetiae_contig845.17458.1 vs. uniprot
Match: K8YWU6_NANGC (Lipid_desat domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YWU6_NANGC)

HSP 1 Score: 94.7 bits (234), Expect = 9.170e-22
Identity = 43/80 (53.75%), Postives = 54/80 (67.50%), Query Frame = 3 
Query:   54 AFLFGSL--MSNEFHKYSHMVDPPPLAQAFQGLGLSISRKQHGRHHSGTFDEKYCLVSGICNGPMDNFGIFRFLERAVYQ 287
            A LF +L  +S EFHK SH+  PP  A   Q LGL ISRK+HG+HHS  F+  YC+++G CN  +D  G FRFLE+AVY 
Sbjct:  137 ATLFFNLQVLSQEFHKLSHLSKPPAWAVRLQDLGLIISRKEHGQHHSSPFESNYCILTGTCNRMLDESGFFRFLEKAVYD 216
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BLAST of mRNA_L-elsbetiae_contig845.17458.1 vs. uniprot
Match: A0A0G4GQ94_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GQ94_9ALVE)

HSP 1 Score: 96.3 bits (238), Expect = 1.050e-21
Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 3 
Query:   57 FLFGSLMSNEFHKYSHMVDPPPLAQAFQGLGLSISRKQHGRHHSGTFDEKYCLVSGICNGPMDNFGIFRFLERAV 281
            F      + EFHKYSHM +PP L +  Q  GL +SRK+HG+HH+  F+  YC++ G CN P+D+ G FRFLER V
Sbjct:  248 FAVSQAFAQEFHKYSHMTNPPALVRRLQDAGLILSRKEHGQHHNSPFEGHYCILFGFCNRPLDSIGFFRFLERRV 322
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BLAST of mRNA_L-elsbetiae_contig845.17458.1 vs. uniprot
Match: W7U0R7_9STRA (Kua-ubiquitin conjugating enzyme hybrid, localization n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U0R7_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 4.600e-21
Identity = 43/80 (53.75%), Postives = 54/80 (67.50%), Query Frame = 3 
Query:   54 AFLFGSL--MSNEFHKYSHMVDPPPLAQAFQGLGLSISRKQHGRHHSGTFDEKYCLVSGICNGPMDNFGIFRFLERAVYQ 287
            A LF +L  +S EFHK SH+  PP  A   Q LGL ISRK+HG+HHS  F+  YC+++G CN  +D  G FRFLE+AVY 
Sbjct:  249 ATLFFNLQVLSQEFHKLSHLSKPPAWAVRLQDLGLIISRKEHGQHHSSPFESNYCILTGTCNRMLDESGFFRFLEKAVYD 328
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BLAST of mRNA_L-elsbetiae_contig845.17458.1 vs. uniprot
Match: A0A7S2W8D5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W8D5_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.690e-20
Identity = 37/79 (46.84%), Postives = 52/79 (65.82%), Query Frame = 3 
Query:   51 VAFLFGSLMSNEFHKYSHMVDPPPLAQAFQGLGLSISRKQHGRHHSGTFDEKYCLVSGICNGPMDNFGIFRFLERAVYQ 287
            V F    ++S EFHK SH V+PPP A   Q   + +SRK+HG HHS  F+  YC+++G+CN P+D F ++R LE  VY+
Sbjct:  230 VIFFNAQILSQEFHKLSHTVNPPPWASWLQARNVILSRKEHGLHHSSPFESHYCILTGMCNKPLDRFNVWRRLEAIVYR 308
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BLAST of mRNA_L-elsbetiae_contig845.17458.1 vs. uniprot
Match: A0A7J7IK91_9RHOD (Lipid_desat domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IK91_9RHOD)

HSP 1 Score: 87.8 bits (216), Expect = 2.340e-18
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 3 
Query:   48 GVAFLFGSLMSNEFHKYSHMVDPPPLAQAFQGLGLSISRKQHGRHHSGTFDEKYCLVSGICNGPMDNFGIFRFLERAVYQ 287
            GV FL     + EFHK+SHM+ PPP  +  Q  G  IS+++HG+HH   + EKYC+VSG CN  +D    FR LE  +++
Sbjct:  305 GVVFLLSVAFAQEFHKWSHMIRPPPAVRFLQRSGWLISQREHGQHHQSPYHEKYCIVSGWCNRLLDETHFFRHLEYLIWR 384
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BLAST of mRNA_L-elsbetiae_contig845.17458.1 vs. uniprot
Match: A0A6S9FHC8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FHC8_HETAK)

HSP 1 Score: 86.7 bits (213), Expect = 2.540e-18
Identity = 42/93 (45.16%), Postives = 55/93 (59.14%), Query Frame = 3 
Query:    9 LRLADPGLFGVALGVAFLFGSLMSNEFHKYSHMVDPPPLAQAFQGLGLSISRKQHGRHHSGTFDEKYCLVSGICNGPMDNFGIFRFLERAVYQ 287
            L LA P      L + F    ++S EFHK SHMV+PP  AQ  Q   + ISRK HG HHS  F+  YC+++G CN  +D   +FR LE+ VY+
Sbjct:  197 LPLALPAKLFTVLWLCF---QVLSQEFHKLSHMVNPPAWAQVLQEKNVIISRKVHGLHHSSPFEGNYCILTGWCNQALDQSRLFRGLEKLVYE 286
[Close]
BLAST of mRNA_L-elsbetiae_contig845.17458.1 vs. uniprot
Match: A0A7S1CXJ7_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CXJ7_CYCTE)

HSP 1 Score: 84.7 bits (208), Expect = 3.160e-18
Identity = 36/89 (40.45%), Postives = 49/89 (55.06%), Query Frame = 3 
Query:   27 GLFGVALGVAFLFGSLMSNEFHKYSHMV--DPPPLAQAFQGLGLSISRKQHGRHHSGTFDEKYCLVSGICNGPMDNFGIFRFLERAVYQ 287
            G F       F    ++S EFHK+SHM   + P      Q +GLS+ R QH  HH   F+  YC++SG+CN P+D  GIFR +E  +Y 
Sbjct:  102 GPFTTFFFTVFCVMEILSQEFHKWSHMTKGECPEWVNWLQSVGLSVPRNQHALHHKEPFEGNYCIISGVCNAPLDRLGIFRRMEHMIYD 190
[Close]
BLAST of mRNA_L-elsbetiae_contig845.17458.1 vs. uniprot
Match: A0A0D2MNU9_9CHLO (Lipid_desat domain-containing protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MNU9_9CHLO)

HSP 1 Score: 84.3 bits (207), Expect = 1.510e-17
Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = 3 
Query:   54 AFLFGSLMSNEFHKYSHMV--DPPPLAQAFQGLGLSISRKQHGRHHSGTFDEKYCLVSGICNGPMDNFGIFRFLERAV 281
            +F+F + MS +FH +SHM   + P +  A Q  G+ I R+ HG HH   FD  YC+VSG  N P+DN G+FRFLE+A+
Sbjct:  187 SFIFLACMSQQFHAWSHMKKSELPGVVVALQDAGILIGRRAHGAHHKPNFDGNYCIVSGWWNEPLDNSGVFRFLEKAI 264
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig845.17458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5G4_ECTSI3.810e-4465.26Lipid_desat domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KFV9_9PHAE2.770e-4266.32Lipid_desat domain-containing protein n=1 Tax=Ecto... [more]
K8YWU6_NANGC9.170e-2253.75Lipid_desat domain-containing protein n=2 Tax=Mono... [more]
A0A0G4GQ94_9ALVE1.050e-2150.67Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
W7U0R7_9STRA4.600e-2153.75Kua-ubiquitin conjugating enzyme hybrid, localizat... [more]
A0A7S2W8D5_9STRA1.690e-2046.84Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7J7IK91_9RHOD2.340e-1845.00Lipid_desat domain-containing protein n=1 Tax=Cyan... [more]
A0A6S9FHC8_HETAK2.540e-1845.16Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1CXJ7_CYCTE3.160e-1840.45Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A0D2MNU9_9CHLO1.510e-1747.44Lipid_desat domain-containing protein n=1 Tax=Mono... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig845contigL-elsbetiae_contig845:18971..20505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size289
Cds size288
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig845.17458.1prot_L-elsbetiae_contig845.17458.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig845 18972..20505 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816926.978339-CDS-L-elsbetiae_contig845:18971..190031622816926.978339-CDS-L-elsbetiae_contig845:18971..19003Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig845 18972..19003 -
1691683918.3333902-CDS-L-elsbetiae_contig845:18971..190031691683918.3333902-CDS-L-elsbetiae_contig845:18971..19003Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig845 18972..19003 -
1622816926.9907231-CDS-L-elsbetiae_contig845:19702..198751622816926.9907231-CDS-L-elsbetiae_contig845:19702..19875Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig845 19703..19875 -
1691683918.346263-CDS-L-elsbetiae_contig845:19702..198751691683918.346263-CDS-L-elsbetiae_contig845:19702..19875Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig845 19703..19875 -
1622816927.0006983-CDS-L-elsbetiae_contig845:20422..205051622816927.0006983-CDS-L-elsbetiae_contig845:20422..20505Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig845 20423..20505 -
1691683918.3579316-CDS-L-elsbetiae_contig845:20422..205051691683918.3579316-CDS-L-elsbetiae_contig845:20422..20505Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig845 20423..20505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig845.17458.1

>prot_L-elsbetiae_contig845.17458.1 ID=prot_L-elsbetiae_contig845.17458.1|Name=mRNA_L-elsbetiae_contig845.17458.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=96bp
LRCSGWPTPGCSELRWGWRSCSGHSCRMSSTSTRTWSTLLLWRKPSKGWV
SASAASSTGDTTRGPSTRSTASSAVFATARWTTSGSSVFWRGRCTR
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mRNA from alignment at L-elsbetiae_contig845:18971..20505-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig845.17458.1 ID=mRNA_L-elsbetiae_contig845.17458.1|Name=mRNA_L-elsbetiae_contig845.17458.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1535bp|location=Sequence derived from alignment at L-elsbetiae_contig845:18971..20505- (Laminarionema elsbetiae ELsaHSoW15)
TTGCGCTGCTCCGGTTGGCCGACCCCGGGCTGTTCGGAGTTGCGTTGGGG
GTGGCGTTCTTGTTCGGGTCACTCATGTCGAATGTGAGTTTCCCCCCGGA
GAAACAATATCTGGTCCGTCCGTCCGTCCGATTTTGTTTTTTTCTCTTCA
CATTTTTTTCCAGTGCACTCGATGGGCTGGCTCCCTGTCACGAGGGCACC
TTGCCATAGTCCTGGACCGTGGTCACACGAAAGGGTTCCTTTTACCCAAG
GCCTCCACTGCCCCCGTCTGCGGTGCTTGCCTGCGGTTTTTATCGCGAGA
AGTTTTCCAGCCGTCCCTTTCCCTCGTTTGGATTTTGGACAGTATTTATT
GAAGTATTTGCCGACTTAACTGTCTCCGACATGCGACCCGGCGGCGCCTC
TGTTCTACTCGGAGATGCTAAATATCATCTTTGCTTTTTTTGATTTCATC
GCGTACATAATTCCCCTTTTTACCTATTTACGTACGACCCTCTTTCTTGT
GTTTTTTTTCTCGCACCACCCCAACCTTCCCCGTCCTGTTTTTTCACAAA
TTAATGCTTTTTGCTTTGCGTTTTTGCGTCTGCTTTTTTGGGGTTGCGCG
TCTCTGCTGCCGTGCGTGCGTGTGCCGCAGGAGTTCCACAAGTACTCGCA
CATGGTCGACCCTCCTCCTCTGGCGCAAGCCTTCCAAGGGTTGGGTCTCA
GCATCAGCCGCAAGCAGCACGGGCGACACCACTCGGGGACCTTCGACGAG
AAGTACTGCCTCGTCAGCGGTATTTGCAACGGCCCGATGGACAACTTCGG
GATGTAAGTCGGTCGCCCCAACAACCGCATCACCTCCACTACTGTTGCTG
CTGCTACTGCTGTGTAGAGGTATGCAATTATGCTGGTGCAAGTTGAACGC
GCGAGCTGTCGCTCTCTCTTTCTCTCTGTGTCTGTCTGTCTGTCTGTCTG
TCTGTCTGTCTTTCTCATTCTCATTTCTCATTCTCTCTCTCTCTTGCCGA
GGTTCGACATGCGGTTGTGCACACATTTTGTTTCTCCCCTCACCTTATTC
GTCGTCTGCCCCACTGGCCCCCATCCTCCACTACGACTAGCTAGACGACC
CAATCGGGGTCACACGCATGTGCATGTGAGCGGCTGTTTGGCGTGTTGTT
TTCCGGTCCAGTCCGCGCCCTCGTATTGTGTGCACACATCGATCACCACC
TTCGTTCTGCGCCGCGTCGACTCGAGGAGGAAAGCACGAGATGGACGGCG
GCGGTGTAACCCTCAGTGTGGGTGTCTTCATGAACCTCGCGTGCGGAAAC
CCGACCTTGAGGGGCATTCGGCAGGCGTCGCTGATACATACCCCCTCTTG
GCTCCTAGGAGGCCAGGGACACGAGGGCGCACGTACGTGCCCTTGCTCTG
ATTTTCCATTGTTTCTTCGACTCCAGTTTCTTGAACTCTACCCGCCGCTC
CGCTCCACCCTGCCCCCCCCCCCTCTTTTTTCTCTACACTACATATTTAC
AGCTTCCGTTTTCTGGAGAGGGCGGTGTACCAGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig845:18971..20505-

>mRNA_L-elsbetiae_contig845.17458.1 ID=mRNA_L-elsbetiae_contig845.17458.1|Name=mRNA_L-elsbetiae_contig845.17458.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig845:18971..20505- (Laminarionema elsbetiae ELsaHSoW15)
TTGCGCTGCTCCGGTTGGCCGACCCCGGGCTGTTCGGAGTTGCGTTGGGG
GTGGCGTTCTTGTTCGGGTCACTCATGTCGAATTTGCGCTGCTCCGGTTG
GCCGACCCCGGGCTGTTCGGAGTTGCGTTGGGGGTGGCGTTCTTGTTCGG
GTCACTCATGTCGAATGAGTTCCACAAGTACTCGCACATGGTCGACCCTC
CTCCTCTGGCGCAAGCCTTCCAAGGGTTGGGTCTCAGCATCAGCCGCAAG
CAGCACGGGCGACACCACTCGGGGACCTTCGACGAGAAGTACTGCCTCGT
CAGCGGTATTTGCAACGGCCCGATGGACAACTTCGGGATGAGTTCCACAA
GTACTCGCACATGGTCGACCCTCCTCCTCTGGCGCAAGCCTTCCAAGGGT
TGGGTCTCAGCATCAGCCGCAAGCAGCACGGGCGACACCACTCGGGGACC
TTCGACGAGAAGTACTGCCTCGTCAGCGGTATTTGCAACGGCCCGATGGA
CAACTTCGGGATCTTCCGTTTTCTGGAGAGGGCGGTGTACCAGACTTCCG
TTTTCTGGAGAGGGCGGTGTACCAGA
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