mRNA_L-elsbetiae_contig8441.17452.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8441.17452.1
Unique NamemRNA_L-elsbetiae_contig8441.17452.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig8441.17452.1 vs. uniprot
Match: D7FLG3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLG3_ECTSI)

HSP 1 Score: 247 bits (630), Expect = 3.290e-72
Identity = 169/207 (81.64%), Postives = 177/207 (85.51%), Query Frame = 1 
Query:  166 SAAAGSLNAFLNGAYACGPMAAGAFRGXXXXXXXXXXXXXXXXXXXXXXXXSVSVLGGADAPLRQLDGPIRQLIETKERELHEIHDFRISRSLEGLLEEREVTLADSFASRYDKLKEDFKFNLGLIEDRDVELGRYEATVQGLKESLRDKEVEASELKMRVDEALSVHRQAAARENEQQGYWQAKCKAMRDEMDALRWAREEESRAN 786
            S  AGSLNAFLN AYA GP    A  GXXXXXXX  XXXXXXXXXXXXXXXSV   GG         GP+RQLIETKERELHEIHDFR+ RSLEGLLEERE TLADSFA RYDKLKEDFKFNLGLIEDRDVELGRYEA +QGLKESLRDKEVEASE+KMR+DEAL V+RQAAARENEQQGYWQAKCKA+RDEMD LRWAREEESRA+
Sbjct:  100 SVVAGSLNAFLNSAYAGGPATGEAAGGXXXXXXXRAXXXXXXXXXXXXXXXSV--FGGVGG------GPLRQLIETKERELHEIHDFRL-RSLEGLLEEREATLADSFA-RYDKLKEDFKFNLGLIEDRDVELGRYEAALQGLKESLRDKEVEASEVKMRLDEALCVNRQAAARENEQQGYWQAKCKALRDEMDGLRWAREEESRAS 296
[Close]
BLAST of mRNA_L-elsbetiae_contig8441.17452.1 vs. uniprot
Match: A0A7S2WNF5_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WNF5_9STRA)

HSP 1 Score: 105 bits (261), Expect = 2.130e-21
Identity = 63/136 (46.32%), Postives = 92/136 (67.65%), Query Frame = 1 
Query:  373 IRQLIETKERELHEIHDFRISRSLEGLLEEREVTLADSFASRYDKLKEDFKFNLGLIEDRDVELGRYEATVQGLKESLRDKEVEASELKMRVDEALSVHRQAAARENEQQGYWQAKCKAMRDEMDALRWAREEESR 780
            +R LI+ KE+ELH+I+D+RI RSLE  L E+E  L +    R+ KLKEDF++NL LIEDRD EL +Y+A    +K  +RDKE E S+LK++V E  +  ++A  + NE +GY+  K K M+  MD+ +W+ E+  R
Sbjct:   94 LRNLIQQKEKELHDINDYRI-RSLEQSLREKESQL-EVQRERFSKLKEDFQYNLKLIEDRDTELTKYDAAFAQVKSVVRDKEGEVSDLKIQVAEVETQLKRATNKSNELEGYYSEKIKDMKATMDSSKWSLEDAMR 227
[Close]
BLAST of mRNA_L-elsbetiae_contig8441.17452.1 vs. uniprot
Match: A0A8K1CMT4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CMT4_PYTOL)

HSP 1 Score: 101 bits (251), Expect = 4.400e-20
Identity = 66/152 (43.42%), Postives = 95/152 (62.50%), Query Frame = 1 
Query:  319 SVSVLGGADAPLRQLDGPIRQLIETKERELHEIHDFRISRSLEGLLEEREVTLADSFASRYDKLKEDFKFNLGLIEDRDVELGRYEATVQGLKESLRDKEVEASELKMRVDEALSVHRQAAARENEQQGYWQAKCKAMRDEMDALRWAREEE 774
            S S L    A  R   G IR LI  KE+ELH+I+++RI R+LE LL E+E T A ++  +++KL+EDFK+NL L+E RD EL  Y+     LK  LRD+E E SELK +V +  +  +Q   R +EQ+ ++Q K K  R +M+  RW  ++E
Sbjct:   17 SESSLSPPPAIARVSPGNIRSLILEKEKELHDINEYRI-RTLETLLREKE-TAAHAYKQKFNKLQEDFKYNLKLLEGRDEELALYDTNFASLKNVLRDREAEISELKAQVADLQTDVKQEQKRASEQEVFFQQKLKDARAQMEGARWNFDDE 166
[Close]
BLAST of mRNA_L-elsbetiae_contig8441.17452.1 vs. uniprot
Match: A0A3F2RUD4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RUD4_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 6.950e-18
Identity = 60/131 (45.80%), Postives = 84/131 (64.12%), Query Frame = 1 
Query:  367 GPIRQLIETKERELHEIHDFRISRSLEGLLEEREVTLADSFASRYDKLKEDFKFNLGLIEDRDVELGRYEATVQGLKESLRDKEVEASELKMRVDEALSVHRQAAARENEQQGYWQAKCKAMRDEMDALRW 759
            G IR LI  KE+ELH+I+++RI R+LE LL ++E T A++   +  KL+EDFK+NL L+E RD EL  Y+A    LK  LRD+E E SEL+ R  E     ++A  R +EQ+  +Q K K  R +M+  RW
Sbjct:   20 GNIRSLILEKEKELHDINEYRI-RTLEALLRDKE-TAANAAKQKLSKLQEDFKYNLKLLEGRDEELALYDANFASLKNVLRDREAELSELRAREAELQVELQRAKQRSDEQEVQYQQKLKDARAQMEGARW 148
[Close]
BLAST of mRNA_L-elsbetiae_contig8441.17452.1 vs. uniprot
Match: A0A397E2U9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397E2U9_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 9.080e-18
Identity = 55/136 (40.44%), Postives = 89/136 (65.44%), Query Frame = 1 
Query:  373 IRQLIETKERELHEIHDFRISRSLEGLLEEREVTLADSFASRYDKLKEDFKFNLGLIEDRDVELGRYEATVQGLKESLRDKEVEASELKMRVDEALSVHRQAAARENEQQGYWQAKCKAMRDEMDALRWAREEESR 780
            IR LI  KE+ELH+I+++RI R+LEGLL+E+E  +   +  ++ +L+EDFK+NL L+E RD EL  Y++    LK  +RD+E + SELK+++ +  S  +    + +E   Y Q K K +R  M++ RW+ +E+ R
Sbjct:   15 IRSLILEKEKELHDINEYRI-RTLEGLLKEKEQAM-QGYKQKFYQLQEDFKYNLKLLEGRDEELAMYDSNFATLKIVVRDRESDVSELKIQLADVQSDLKMEKQKASEGDMYMQQKLKEVRGAMESTRWSYDEDMR 148
[Close]
BLAST of mRNA_L-elsbetiae_contig8441.17452.1 vs. uniprot
Match: A0A1V9YJH2_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YJH2_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 9.390e-18
Identity = 56/142 (39.44%), Postives = 96/142 (67.61%), Query Frame = 1 
Query:  361 LDGP--IRQLIETKERELHEIHDFRISRSLEGLLEEREVTLADSFASRYDKLKEDFKFNLGLIEDRDVELGRYEATVQGLKESLRDKEVEASELKMRVDEALSVHRQAAARENEQQGYWQAKCKAMRDEMDALRWAREEESR 780
            +D P  IR LI  KE+ELH+I+++RI R+LE +L ++E ++ + +  ++ KL+EDFK+NL L+E RD EL  Y++    +K  LRD+E E SELK+++ E L+  +Q   + +E   ++Q K K ++ +++A RW+ E+ +R
Sbjct:    1 MDAPDNIRSLILEKEKELHDINEYRI-RTLESMLRDKEQSM-NMYKQKFYKLQEDFKYNLKLLEGRDEELALYDSNFSTIKIVLRDRETEMSELKIQLAEVLADLKQEKLKHDEADVFYQQKLKDVKTQVEAARWSYEDATR 140
[Close]
BLAST of mRNA_L-elsbetiae_contig8441.17452.1 vs. uniprot
Match: A0A6G0W5R1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W5R1_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.660e-17
Identity = 57/136 (41.91%), Postives = 90/136 (66.18%), Query Frame = 1 
Query:  373 IRQLIETKERELHEIHDFRISRSLEGLLEEREVTLADSFASRYDKLKEDFKFNLGLIEDRDVELGRYEATVQGLKESLRDKEVEASELKMRVDEALSVHRQAAARENEQQGYWQAKCKAMRDEMDALRWAREEESR 780
            IR LI  KE+ELH+I+++RI R+LEGLL+E+E T+  ++  ++ KL+EDFK+NL L+E RD EL  Y++    LK  +RD+E E S LK+++ +  S  +    + +E   Y Q K K +R  M++ RW+ +E+ R
Sbjct:    7 IRSLILEKEKELHDINEYRI-RTLEGLLKEKETTM-QTYKQKFYKLQEDFKYNLKLLEGRDEELAMYDSNFATLKMVVRDRESEISNLKIQLADVQSDLKTEKQKASEGDVYVQQKLKELRGAMESTRWSYDEDLR 140
[Close]
BLAST of mRNA_L-elsbetiae_contig8441.17452.1 vs. uniprot
Match: A0A662WKQ3_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WKQ3_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 3.150e-17
Identity = 60/136 (44.12%), Postives = 83/136 (61.03%), Query Frame = 1 
Query:  367 GPIRQLIETKERELHEIHDFRISRSLEGLLEEREVTLADSFASRYDKLKEDFKFNLGLIEDRDVELGRYEATVQGLKESLRDKEVEASELKMRVDEALSVHRQAAARENEQQGYWQAKCKAMRDEMDALRWAREEE 774
            G IR LI  KE+ELH+I+++RI R+LE LL ++E T A     +  KL+EDFK+NL L+E RD EL  Y+A    LK  LRD+E E SEL+ R  E  +  ++   R  EQ   +Q K K  R +M+  RW  ++E
Sbjct:   22 GNIRSLILEKEKELHDINEYRI-RTLEALLRDKE-TAASGAKQQLSKLQEDFKYNLKLLEGRDEELALYDANFASLKNVLRDREAENSELRAREAELQAELQRMRQRTTEQDALFQQKLKDARAQMEGARWKFDDE 155
[Close]
BLAST of mRNA_L-elsbetiae_contig8441.17452.1 vs. uniprot
Match: H3GG76_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GG76_PHYRM)

HSP 1 Score: 92.4 bits (228), Expect = 4.510e-17
Identity = 57/131 (43.51%), Postives = 84/131 (64.12%), Query Frame = 1 
Query:  367 GPIRQLIETKERELHEIHDFRISRSLEGLLEEREVTLADSFASRYDKLKEDFKFNLGLIEDRDVELGRYEATVQGLKESLRDKEVEASELKMRVDEALSVHRQAAARENEQQGYWQAKCKAMRDEMDALRW 759
            G IR LI  KE+ELH+I+++RI R+LE LL ++E T A++   +  KL+EDFK+NL L+E RD EL  Y+A    LK  LRD+E E SE++ R  E  +  ++   R ++Q+  +Q K K  R +M+  RW
Sbjct:  216 GNIRSLILEKEKELHDINEYRI-RTLEALLRDKE-TAANAAKQKLSKLQEDFKYNLKLLEGRDEELALYDANFASLKNVLRDREAELSEIRAREAELQAEVQRVKQRADDQETQYQQKLKDARAQMEGARW 344
[Close]
BLAST of mRNA_L-elsbetiae_contig8441.17452.1 vs. uniprot
Match: K3WZT4_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WZT4_GLOUD)

HSP 1 Score: 92.0 bits (227), Expect = 5.820e-17
Identity = 57/140 (40.71%), Postives = 85/140 (60.71%), Query Frame = 1 
Query:  340 ADAPLRQLDGPIRQLIETKERELHEIHDFRISRSLEGLLEEREVTLADSFASRYDKLKEDFKFNLGLIEDRDVELGRYEATVQGLKESLRDKEVEASELKMRVDEALSVHRQAAARENEQQGYWQAKCKAMRDEMDALRW 759
            A    R   G IR LI  KE+ELH+I+++RI R+LE LL ++E + A+ +  ++ KL+EDFK+NL L+E RD EL  Y+     +K  LRD+E E SE K ++ +     +Q   R  +Q+ Y+Q K K  R +M+  RW
Sbjct:   16 AGVSARLAPGSIRSLILEKEKELHDINEYRI-RTLEALLRDKE-SAANGYKQKFTKLQEDFKYNLKLLEGRDEELALYDTNFANIKSVLRDREAEISEAKAQIADLHVDLKQEQTRCQDQEIYFQQKLKDARAQMEGARW 153
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8441.17452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLG3_ECTSI3.290e-7281.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2WNF5_9STRA2.130e-2146.32Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A8K1CMT4_PYTOL4.400e-2043.42Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3F2RUD4_9STRA6.950e-1845.80Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A397E2U9_9STRA9.080e-1840.44Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A1V9YJH2_9STRA9.390e-1839.44Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A6G0W5R1_9STRA1.660e-1741.91Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A662WKQ3_9STRA3.150e-1744.12Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
H3GG76_PHYRM4.510e-1743.51Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
K3WZT4_GLOUD5.820e-1740.71Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8441contigL-elsbetiae_contig8441:125..6667 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.6
Seed ortholog evalue5.4e-18
Seed eggNOG ortholog42099.EPrPV00000015754
Preferred nameCCDC57
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Coiled-coil domain containing 57. Source PGD
EggNOG OGs1MAQF@121069,28KF3@1,2QSW3@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons5
Model size926
Cds size921
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8441.17452.1prot_L-elsbetiae_contig8441.17452.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8441 125..6664 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816926.5648913-CDS-L-elsbetiae_contig8441:124..3341622816926.5648913-CDS-L-elsbetiae_contig8441:124..334Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8441 125..334 -
1691683918.056658-CDS-L-elsbetiae_contig8441:124..3341691683918.056658-CDS-L-elsbetiae_contig8441:124..334Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8441 125..334 -
1622816926.577464-CDS-L-elsbetiae_contig8441:3200..32991622816926.577464-CDS-L-elsbetiae_contig8441:3200..3299Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8441 3201..3299 -
1691683918.067245-CDS-L-elsbetiae_contig8441:3200..32991691683918.067245-CDS-L-elsbetiae_contig8441:3200..3299Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8441 3201..3299 -
1622816926.5891533-CDS-L-elsbetiae_contig8441:4098..42191622816926.5891533-CDS-L-elsbetiae_contig8441:4098..4219Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8441 4099..4219 -
1691683918.0759554-CDS-L-elsbetiae_contig8441:4098..42191691683918.0759554-CDS-L-elsbetiae_contig8441:4098..4219Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8441 4099..4219 -
1622816926.599502-CDS-L-elsbetiae_contig8441:5716..57761622816926.599502-CDS-L-elsbetiae_contig8441:5716..5776Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8441 5717..5776 -
1691683918.0847285-CDS-L-elsbetiae_contig8441:5716..57761691683918.0847285-CDS-L-elsbetiae_contig8441:5716..5776Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8441 5717..5776 -
1622816926.6100972-CDS-L-elsbetiae_contig8441:6233..66641622816926.6100972-CDS-L-elsbetiae_contig8441:6233..6664Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8441 6234..6664 -
1691683918.0935497-CDS-L-elsbetiae_contig8441:6233..66641691683918.0935497-CDS-L-elsbetiae_contig8441:6233..6664Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8441 6234..6664 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816926.6207447-UTR-L-elsbetiae_contig8441:6664..66671622816926.6207447-UTR-L-elsbetiae_contig8441:6664..6667Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8441 6665..6667 -
1691683918.1019137-UTR-L-elsbetiae_contig8441:6664..66671691683918.1019137-UTR-L-elsbetiae_contig8441:6664..6667Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8441 6665..6667 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8441.17452.1

>prot_L-elsbetiae_contig8441.17452.1 ID=prot_L-elsbetiae_contig8441.17452.1|Name=mRNA_L-elsbetiae_contig8441.17452.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=307bp
MGNDSTNRKYLADSSPAAAAFRHEGGGAPHHQHFQPPGGSYPYNTGGEEQ
PQQRSAAAGSLNAFLNGAYACGPMAAGAFRGGGGGEESARDSSAGGVGGG
GGGGGSVSVLGGADAPLRQLDGPIRQLIETKERELHEIHDFRISRSLEGL
LEEREVTLADSFASRYDKLKEDFKFNLGLIEDRDVELGRYEATVQGLKES
LRDKEVEASELKMRVDEALSVHRQAAARENEQQGYWQAKCKAMRDEMDAL
RWAREEESRANRERSEAQRAALSRQLREREDELEAQRADSAEAFDRIMQQ
RQEETQA
back to top

mRNA from alignment at L-elsbetiae_contig8441:125..6667-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8441.17452.1 ID=mRNA_L-elsbetiae_contig8441.17452.1|Name=mRNA_L-elsbetiae_contig8441.17452.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6543bp|location=Sequence derived from alignment at L-elsbetiae_contig8441:125..6667- (Laminarionema elsbetiae ELsaHSoW15)
GGCATGGGTAACGACAGCACCAACAGAAAATACCTGGCCGACTCTTCCCC
CGCCGCGGCCGCCTTCCGCCACGAAGGCGGAGGAGCACCTCACCACCAAC
ATTTCCAACCTCCGGGCGGATCATATCCGTACAACACAGGCGGAGAGGAG
CAACCGCAGCAGCGCTCGGCGGCGGCGGGCTCTCTCAACGCCTTTCTGAA
CGGGGCTTACGCGTGTGGGCCGATGGCGGCAGGAGCTTTTCGTGGGGGGG
GCGGGGGGGAGGAGTCTGCGAGGGACTCGTCGGCTGGCGGTGTCGGCGGC
GGCGGCGGCGGCGGCGGCAGCGTGTCGGTGTTAGGCGGGGCGGACGCGCC
GTTACGGCAGCTGGACGGGCCGATACGGCAGCTGATCGAGACGAAGGAGA
GAGAGCTCCACGAGATACACGACTTCCGCATAAGGTGTGCTTGCTGGTGC
CGTGATTTCATGTCCTTGTGTCGAGAGTGTGCGGTTCGTTGGTGGGCTTG
TTACTAGTCTATGTTCTAGTCTTGTCAATGCTCGAGAGACTGATGCTGTA
TGCTGCTGCTGTATTTATTGGCAGGGTGGCGATTGGGTGAGGCCGAGCGT
CGACCCTGCGTAGGTATTGTACGAGAGAGAAGAGAAGTTTTGGGGTGCAA
GGCGATTGTATTATCTCGCATCATCATAACTATAGGAATTAGTATAGGTG
TGTACATATCTAGTCTAGATACATGGTCTATTGGCAGCAGTTTATCCCAG
CTGGTTTATCCACCGTGGCCTGCAAGCCCCGAGAACGTGCACACGTCGTA
TCTACATATAAGATATACGCGAATGTCGATGGCGGCCTAGCGACAGGATG
CGTGAACCGAATTGAGACTGCTCGCGCACGCACGCAAAAAGCAGGTCTCT
GGAGGGCCTGCTGGAGGAGCGCGAGGTGACTCTCGCCGACTCGTTCGCAA
GGTGCGTGTCGTGAGCCGATCGGTGGCGTGGGTTTCGCTGAGGGTGGCAG
CCTCAGGTGGTGATCGCCCCCCTTCAAAGCACTGCGCAGCAGCATAAAGT
ATAGGGACGGGTGGTGCCTCGTGCGCAACGCTGCACAAGAGCGCGGCAGC
TTGCACGTTTTACCTACGAGGTTTCTTGCTCGGCGCTCATGTACATGAAA
CTTCAGTCAGCGATCAGTCCAGCAGCAGTAGGTACAGTTACCCCCAGCCC
TGGTGCCAAGCGCGGACATTTTTTTTTCTTCTTCTTGACATTTATTTCCA
GTGCTCGATGGGCTCCCTGTCACGAGGACATCTTGCCAGAGTACTGAACC
GTGGTCACACGGAAGGGTTCCTTTCCCCAAGGCCCCCACTCCCCCCGTCT
GCGATGCTTGCCTAAGATTTTGTCGCGAGAAGGGTTCAGCCGTCCCTTTC
CCTCGTCAACGGTGAGGTCGAAGTTGGGCTGCAGCGTACATATTGCCCAT
GTCGGCCCACTTCCTGAAAGACGAAAGATGAAGGTTTTCCGTTTGGGGTA
CCCGGCGATCATCATCGATCTATCTGCTGGGACTCTTTAGGGGGGGTCGT
GTTTCATGCGTTGCGGAAGTTGGGGTAGCGGGACCTGCGGAAGGGTACCC
TTATCGATTCTCTCACTCTCTATAACGTCTCAACTTGTCATCAACTATCC
TTTCCTCCCGCTTCTGAGAGCGAACTTCCTGTCTGCCTGTCTGTCTACGC
CCTATTTATCGTTTTCATGGCCGGTGAGAACCCGGCGCGGAACCCCCCGG
CTTTGTTGGGGTACCAAGACAGTGGTGTTGGCTGTTCCAGTTTTGTTTCA
CCTCACATGGCGTGTAGAGGGGAGCGAAGGGCTCTCCAGATTCGATATCT
GTTTTATTATTGCTTTGCTGGCCCTTCGGGTCCATTTTATTTTTCGTGTA
CCTTTTCTTGGGTATAAGTTAGCCTGTGACCACGGGAATTGACAGCATCA
AGTGGTGGATTAGTACGGACATTGAGAGGTACTGGATGGAGAGATCAGAA
CGGTTTTTAATGTGAAGACAACACATACATACAGACGAACGAAAGAACAA
ACAAACGCACGACGGTTCATTCATTCATTGACTACGTACATCGAGGATCG
GTAGGTAGTAGGAAAAATAAAAATGGAACCTCCCCACGTTAAGAGACGGA
AACTTTGTTTTGCCCCTACAATACCGGATGCTTTTGCTCTGCCCCCCCTC
GCCCTGCCTCCGCTCAATCCAAGCAGGTTTTTTTTTCTTCTCTCTTTCTT
TCTGCCCAGTATTTGCGTATTTGCCGTCTGCCCCACTGGCCCCCTTCCTC
TACTACGACTAGCTAGACGACCCAGCCGGGGCCACACAGGAGGGGATGTT
GGACCCCCTCCTGCGGTACCTGCCTTAGATGTTTTTACTTCCTTGGATGT
TTTTATCGCAAGCAGGGCTCAGCATTTCCCACCCTCGCTCAATCCAAGCA
GATATGACAAGCTGAAGGAAGACTTCAAGTTTAACCTGGGGCTGATCGAG
GACCGCGATGTGGAGCTTGGGCGGTACGAGGCCACCGTGCAGGGGCTGAA
GGAGAGCTTGAGAGACAAGGTGAGGGAAGGGCGTACGCGGACGCTGCTGT
ACCGTAGGTGACACAAGATACCACACCCCCTGGACAGAGTTTCAAAAGCT
CGATCCCCCCCCCAGCAAGAAGAGTGCCAGTGCCGAAGGAGGGGAGGGCG
TTGGAAATATCTAGTCGAGGGCTGGCTGTCCGAAAATGTGTCGTTTGGTG
CTGGCGCCCTCTTCGTTAAGGAGTAATGATGGAGCTCTAAAAGTCGGTCC
AGGGGTGTGGTATATTGTGTCACCTGCGGTACTTTTGGTTGCGTTCTGCG
TGGCCGCTGCTGCTGCTGCTGCTGCGGCAGCTGCTGCTGTCGTCGTGGTT
ATTGCTGTCCTGCTTGTCTGTTGCTTTCCTCGTGTGGTATGATGCAGCCG
GGTGGCCATCTAGGCTTGAACCTTATGCTGGATTTCTTGCATCAAGATAC
CTAAATACCAGACCATAGAAAGAGTCAGAGACAGAGTTCCCCTCGGCAGC
TGCGCCTCATCTCACCTCGGCGCGACAGAAGAAGCACAGCAGCACTGCTG
CCGGAGCCAATCAGCAGCCACTGCTCCGGGCCAGTCGATTCCGATTCGTT
TTTTGTCTGTCCTTTTTTTGTTTTTTTTTATTTTTCGCTGATGTATATGT
CTGCAAACTGGCGGAAATAGCCTTGGATTAGTTCCCGTGAGTGCTTCAGG
AAGTTATCTGACGTTGTTGTCTTCCTTCCACTGATCGTCTTGGTTCGGTT
GTGCCGACACCACCACTACCCATTATCCTGCGCCGGGGGGGGGGGGCTCC
GCGGTGTGGCGGGTGCAGGAGGTGGAGGCTAGCGAGTTAAAGATGCGAGT
GGATGAGGCGTTGAGCGTCCACAGGCAGGCGGCGGCAAGGGAGAACGAGC
AGCAGGGGTACTGGCAGGTGTGTGACTGCTCCATCTGCGTAGACCCCCGT
GCCCGCTGCCTGGGAACTCAATACATACTTTCCCCCCCATGGGTGTTGTT
GTTTTCCAGCTTACACTGCTTGCCGCGCCGGTGGCAGGAAAAAAAAAAAA
ACTTAACGTGTGATACGACAGCCAACGGTGGCGTTCAAATCGATGGGGAG
CAAAACCCACCGAAGCACGACGTAGGTATGTAGACACATCGTACGTATTT
ATGTGCATAGGGTTCATGCGCACACCGCACTTTTATCTAGTGCTTCCAGA
TTCCTGGCTTTCGCGTCGCGAGAGAAGAGTAGAGTCTGTCGTGCGATGGC
GGTACCCATTTTTTCCTATATAGGCACCAAGCGCAACAATCGATCATAAA
AGTATGCACATACAAGGGCGCTTCGCGGCGGCCCGCGATAGCGGGCCGCG
CTACGCGATAGGCCCGTAGAGACGATGGCAAGTGTTTGAACTGTGTATGT
CCAGATTGTGGGCGTCTTGTGGAGGTCCGCGGGTTTGCGCGGGCAATTGT
TTTCCCCCGCGCGGGGTTTCTATTTCCGCCCAGTGCATTTGCCCGCCGCG
GGACTGTCATCGCTGTTTGCCGGTAATTGGCCGAGGATTCGTAGATTTGG
GAGATGTGACTTTGCGCGTCGCTAGCGCTGCGCTGCGAGCCTTCCCCATG
GCGAGGGCCCACGGGCAGGGCCCTCGCAGCCGAGGGCTACCGGCAGGCGC
AAAGATTTCGGCGAGGCGAGGTCGACGGACCGAGAAATCCCCAAAGCGTA
GGCTCTAGGCTCCTGAGCGAGAGGCTTAAGTAATATAGTTTAGGTAGGTT
TATGTATGCATATACGAAGGGGGATCTTGTATGCACATGCATATATATTT
CGAGTGCTCTTTCGCTTTATGTGAAGAAACAAAAATTAACAAATTTGGAA
ATCGACGTTGCGTTTTGTGCATGTACATATAGGCAGTGCTTTTTTTGTTT
GTATTTGACGCGACAAATAATAAATGAATAGGCATCGGCGGAAGTAATCA
CCCAAAGGACGGAAGTCCGTGAAAGAACCTACGCGAAGAATATTATACTG
CTGTATTTTTAATTTGATTTTAATTTACTCCCACAGAACCAAGTGCCGTC
TGCACGCAGTTTCGTAGAGCCGCGCCTCGACAACCCCGAGAGAGAGCTTC
GAGTACCGTATACATATGACACAAGATAACACACACCCCCTGCGCCGATT
TTCAAAGCTCAAATACTCCGCAGCGAGAAAGGTGACAGTCCCGAAAAGGG
TACATACATAGCGTTGGAATGATCTGATAAAGAGCTGTCCGAAAACGTGT
CGTTTGGTATTATAATATTATAAGCATACCCGTTTCGGAGCAACCGAGCT
TTGGAAACCGGTCCAGGGGGTCTGTTATCTTGTGTCATATGTATACGGTA
GGTGGGTTTCGCGTCTCGCTTTCGTTCGCCTGCGGCCGGATGCTTTGCAA
GACGGACGCTGCGAGACAAGATGACATTCCATCATCGCCAGTCACCAACC
TCAAGGAGGAGGAGAAGAGAGAGAGCACACGCCTGTTTGCCTGTTTGCCT
GTTTATGTTACCTTACATTTTTTTTTTCTTCTTCACATTTATTTCCAGTG
CTCGATGGGCTCCCTGTCACGAGGACATCTTGCCAGAGCACTGAACCGTG
GTCGCACAGAAGGGAACCAGACTTTTAAAATCATGTCCAACGTTTATAGT
AGGTAGGAGGCCAAGCCCTTTTTAAAAAGCCTGTTCACAGATATTTGGAT
GGGACGCAAAAAAAAACAAAATCATCAGCAAAAGCTGTCCTGAACTCCCC
GCACCGCACCACGCCGCACCCCTTTGAGTCTGCCGGCGAACACACATGGA
ACGTGTCGATGCCACTGCTTGTCTGCAGGTCCCTTTCGTATATACATACC
CGTCAGACCAGCGGCGCGGTCAAACGTTTGACAAGATAGGGTTGGCCGTC
TTGGCATGGCCGCGGCCTCCCGCCAAAACACACAGACCTTCGGTTACCCG
GTACGGGTAATCAGTCCCCTTTGCTCTCGATAGCCTAGCTACGTGTGTAC
GCGCTTAAACTCTGCCGTGCCTCCTCTCCTTCTTCAGGCCAAAGTTCTCG
CGCGCTCGATAGTCTGCACTAATAACTCTGTCCTGTCCCTTCGCACTCAG
ACCAAGTAAGTGCTCGCACTCGCTATTTCTTGTATCTTCATATCTATGTA
TTATTGCCAGCACCAGGGGTTCTTTGCCATGAAGGACATTTTGCCAGAGT
GCTGACCCGGTGGTCATACAGGAGGGTTCCTGTCCCCCGAGGCCCCGACA
TCCCCCTTTCTGGACTCCACTCTACTAGCTCTCTTTGCTGTCTTTAATCT
TCTCTTTATCTTGGCTTTTTGAGGCCAAGGGCTCCCCGCAACCAAGCAAC
AGTATGATGCCCTAAATCCTATGGTATATCTCAACCCAAGGTTCTCGCAC
TCAATACTCCACACTTAAACTTTGCCCTGTCTATCCTGCTATCTCCCCTT
CTCTTTTATATTGTCTTGGCTTTTTGAGGCCAAGTGCTCCTCTCACCCAA
CAGTATGATGCCCTTAACCCTACATGTATCCCTAACCCCAAGGTTCTCGT
ACTCAAAACTCCACACTAGCTCTGCCCTGTCTATCCTGCTATCTCCCCTT
CTCTTTTATATTGGCTTGGCTTTTTGAGGCCAAGTGCTCCTCCCACCCAA
CAGTATGATGCCCTTAACCCTACATGTACCCCTGACCCCCAAGTTCTCGC
ACTCAAAACTCCACAACCATGTAGCTCTGCCCTCTGTCTAAGTATCCTGT
TGTCCTCTCCTCCCCCGGGCCCCCTCCTTCCAGGCCAAGTGTAAGGCGAT
GCGAGACGAGATGGACGCCCTGAGATGGGCCCGCGAAGAGGAGTCGAGGG
CTAACCGGGAGAGGTCGGAGGCCCAGAGGGCGGCGCTGTCGCGGCAGCTG
AGGGAGCGGGAGGACGAGCTTGAGGCGCAGAGGGCGGACTCCGCCGAGGC
TTTCGACAGGATTATGCAGCAGAGGCAGGAGGAGACGCAAGCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig8441:125..6667-

>mRNA_L-elsbetiae_contig8441.17452.1 ID=mRNA_L-elsbetiae_contig8441.17452.1|Name=mRNA_L-elsbetiae_contig8441.17452.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1842bp|location=Sequence derived from alignment at L-elsbetiae_contig8441:125..6667- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGTAACGACAGCACCAACAGAAAATACCTGGCCGACTCTTCCCCCGC
CGCGGCCGCCTTCCGCCACGAAGGCGGAGGAGCACCTCACCACCAACATT
TCCAACCTCCGGGCGGATCATATCCGTACAACACAGGCGGAGAGGAGCAA
CCGCAGCAGCGCTCGGCGGCGGCGGGCTCTCTCAACGCCTTTCTGAACGG
GGCTTACGCGTGTGGGCCGATGGCGGCAGGAGCTTTTCGTGGGGGGGGCG
GGGGGGAGGAGTCTGCGAGGGACTCGTCGGCTGGCGGTGTCGGCGGCGGC
GGCGGCGGCGGCGGCAGCGTGTCGGTGTTAGGCGGGGCGGACGCGCCGTT
ACGGCAGCTGGACGGGCCGATACGGCAGCTGATCGAGACGAAGGAGAGAG
AGCTCCACGAGATACACGACTTCCGCATAAGATGGGTAACGACAGCACCA
ACAGAAAATACCTGGCCGACTCTTCCCCCGCCGCGGCCGCCTTCCGCCAC
GAAGGCGGAGGAGCACCTCACCACCAACATTTCCAACCTCCGGGCGGATC
ATATCCGTACAACACAGGCGGAGAGGAGCAACCGCAGCAGCGCTCGGCGG
CGGCGGGCTCTCTCAACGCCTTTCTGAACGGGGCTTACGCGTGTGGGCCG
ATGGCGGCAGGAGCTTTTCGTGGGGGGGGCGGGGGGGAGGAGTCTGCGAG
GGACTCGTCGGCTGGCGGTGTCGGCGGCGGCGGCGGCGGCGGCGGCAGCG
TGTCGGTGTTAGGCGGGGCGGACGCGCCGTTACGGCAGCTGGACGGGCCG
ATACGGCAGCTGATCGAGACGAAGGAGAGAGAGCTCCACGAGATACACGA
CTTCCGCATAAGCAGGTCTCTGGAGGGCCTGCTGGAGGAGCGCGAGGTGA
CTCTCGCCGACTCGTTCGCAAGCAGGTCTCTGGAGGGCCTGCTGGAGGAG
CGCGAGGTGACTCTCGCCGACTCGTTCGCAAGCAGATATGACAAGCTGAA
GGAAGACTTCAAGTTTAACCTGGGGCTGATCGAGGACCGCGATGTGGAGC
TTGGGCGGTACGAGGCCACCGTGCAGGGGCTGAAGGAGAGCTTGAGAGAC
AAGCAGATATGACAAGCTGAAGGAAGACTTCAAGTTTAACCTGGGGCTGA
TCGAGGACCGCGATGTGGAGCTTGGGCGGTACGAGGCCACCGTGCAGGGG
CTGAAGGAGAGCTTGAGAGACAAGGAGGTGGAGGCTAGCGAGTTAAAGAT
GCGAGTGGATGAGGCGTTGAGCGTCCACAGGCAGGCGGCGGCAAGGGAGA
ACGAGCAGCAGGGGTACTGGCAGGAGGTGGAGGCTAGCGAGTTAAAGATG
CGAGTGGATGAGGCGTTGAGCGTCCACAGGCAGGCGGCGGCAAGGGAGAA
CGAGCAGCAGGGGTACTGGCAGGCCAAGTGTAAGGCGATGCGAGACGAGA
TGGACGCCCTGAGATGGGCCCGCGAAGAGGAGTCGAGGGCTAACCGGGAG
AGGTCGGAGGCCCAGAGGGCGGCGCTGTCGCGGCAGCTGAGGGAGCGGGA
GGACGAGCTTGAGGCGCAGAGGGCGGACTCCGCCGAGGCTTTCGACAGGA
TTATGCAGCAGAGGCAGGAGGAGACGCAAGCCGCCAAGTGTAAGGCGATG
CGAGACGAGATGGACGCCCTGAGATGGGCCCGCGAAGAGGAGTCGAGGGC
TAACCGGGAGAGGTCGGAGGCCCAGAGGGCGGCGCTGTCGCGGCAGCTGA
GGGAGCGGGAGGACGAGCTTGAGGCGCAGAGGGCGGACTCCGCCGAGGCT
TTCGACAGGATTATGCAGCAGAGGCAGGAGGAGACGCAAGCC
back to top