mRNA_L-elsbetiae_contig844.17450.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig844.17450.1 vs. uniprot
Match: D8LT85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT85_ECTSI) HSP 1 Score: 321 bits (823), Expect = 1.650e-90 Identity = 310/854 (36.30%), Postives = 387/854 (45.32%), Query Frame = 1 Query: 1981 MVAMTPVEYAGGQCTEVALDLDRGNLHVYHSA-SNGERGLHQVVPLSKVSASVAKRSPKLVILRRSGRHLATIGQGAWRELSGQDVAHKKRAKA---------STGGCSGVTTT--NSXXXXXXXXXATAGWSGEHGGREPADFDADFAMEAFFTRARSSNRSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSCESXXXDAVSTFGNNG--SSAAYDAFFDSCPTSVLRGEWPGKAAGTEEQTEAGHE---------KVPS----DSP----RPTPPAQVAPSPNSWRFTTHQREDVSPSLAAPAARTAPNSMCPAWS----SAQPTDATTSKQGSAEEEEGWGYAQTAPSL------------CVRWGGENEVDIKGRTAAHDDHDDCPEKESKFTVVAASSSTVAKHKATELPANSPATATPATVATLGLRPPRNRYV-----VAAEVAAAGTTSSISGRPA--SPEVATIPKPWTLRNKIGA--ATAGASKKGNRVCHVLRSGSAKRETSSTRGPHPAGGGGTRRWNLVNAETNAIRTSRRKQNSAAAVAARIAAGKQRWGGLRTARNTTSTFMHVLNVRSNSLDNETSSNASDXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDPSPIWRESSSDYNSSSDNSSFDEEVGGRVSDTSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTINSEDNDVRPSRWGGRGGDADRTLKRPATGRQPITKVS--------------TAQLRKVFFTSSIVIAGLQEDVQTELVDLLVEELPRVDVRIVADIASTIQTVQIMPPSLVVVAWAALGSTKAARDFLADGPRGLRGIQPGLPVAVLGGQNDGEGL 4332 MVAMTPVEYAGG+ TEVALDLDRGNLHVYH+A G R H+VVPLSKVSASVAKR+PKLV+LR SGRHLATIGQGAWR++SG++ AH+KR KA +TG + T +S A+AGW G E D D +FA+EAF RARS NRSS S +S GNN SS A DA + P RG WP AA +T AG + PS DS RPTPPA SWRFTT E+ + +AP A + P W+ SA TD QG E++ YA L + + A + DD +++ T VAA SS AK T + A+ A A A G+ N +AA+ AA G PA + E +P+ WTL NKI A T + +G+ + S TR P ++RW++V AETNA++ RR Q +A+ AAR A K++WG L+ AR TTS M+ L V S+ +D++ S E+ V GRGG +R P GR+ I + TA+L K+FF SIVIAGLQE VQ +L D V ++P V+VRIVAD+ASTIQTVQIMPPSLV+VAWAA S K ARDFL DG RGLRGI+PGLPVAV+GG+NDGEG+ Sbjct: 1 MVAMTPVEYAGGERTEVALDLDRGNLHVYHAARGEGRRDNHRVVPLSKVSASVAKRNPKLVVLRWSGRHLATIGQGAWRDVSGRNAAHRKRLKAVSITSSTAWNTGSVAKETPLLPSSSAAAAGAGVASAGWLNP--GPED-DVDKNFAIEAFSVRARSGNRSSRPSRVPSSARRYFRQALPAV--------ASGSGGDRGTISAQGNNSYSSSVACDASLEPRPVRAPRG-WPSMAATEGARTGAGDGVAAAPDKGVRFPSSQGCDSSGALLRPTPPAHARNISQSWRFTTCPPEERGAN-SAPTVGVACSRASPLWTTRTVSACRTDGAAMTQGGEEDDWVPPYANQDDELDGXXXXXXXXXXXXXXRAMKSIAAALKQAQLTEGDDGKKRDGNPTFVAALSSAFAKRVVTGVTAS--AVAAEARAQQEGIDRDGNEDECGDRHIAAQDGAAPAHGIGHGHPAPFNAEAGILPRRWTLVNKIRAKSTTTPGAPQGHIGNGSVASNGKIAMAGVTRKP-------SKRWHMVKAETNAVKAYRRAQVAASTRAARHKASKKQWGELKVARITTSYLMNALMVGSDEIDDDEPS------------------------------------------------------------------------------------------------------CSEGEERGV------GRGGSGNR----PRRGRREIGDAAGGSASENSSSIWSRTAELGKLFFAGSIVIAGLQEPVQKQLADQFVRDIPNVEVRIVADVASTIQTVQIMPPSLVLVAWAAFSSAKFARDFLGDGARGLRGIKPGLPVAVVGGENDGEGM 720
BLAST of mRNA_L-elsbetiae_contig844.17450.1 vs. uniprot
Match: A0A6H5KG00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG00_9PHAE) HSP 1 Score: 105 bits (263), Expect = 5.200e-20 Identity = 163/416 (39.18%), Postives = 210/416 (50.48%), Query Frame = 1 Query: 3001 DDCPEKESKFTVVAASSSTVAKHKATELPANSPATATPATVATLGLRPPRNRYV-----VAAEVAAAGTTSSISGRPA--SPEVATIPKPWTLRNKIGA--ATAGASKKGNRVCHVLRSGSAKRETSSTRGPHPAGGGGTRRWNLVNAETNAIRTSRRKQNSAAAVAARIAAGKQRWGGLRTARNTTSTFMHVLNVRSNSLDNETSS--NASDXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDPSPIWRESSSDYNSSSDNSSFDEEVGGRVS-----DTSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTINS--------EDNDVRPSRWGGRGGDADRTLKRPATGRQPITKVSTAQLRKVFFTSSIVIAGLQEDVQTELVDLLVEELPRVDVRIVADIASTIQTVQ 4176 DD ++ K T VAA SST AK T A+ A A A G+ N +AA+ AA + G PA + + +P+ W L NKI A T + +G+ + S TR P ++RW +V AETNA++ RR Q +A+ AR +RWGGL+ ARNTTS MH L V S+ +D++ SS + E+ S IW ESSS + SS + D G S D+S XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX E+ND PS+ + KR AT R +++ TA+L K+FF SIVIAGLQE +Q +L D V ++P V+VRIVAD+ASTIQ Q Sbjct: 17 DDGKRRDGKPTFVAALSSTFAKRVVTGATAS--AVAAEARAQQEGIDRDGNEDECGDRHIAAQDGAAPSRGIGHGHPAPFNADAGILPRRWALENKIRAKRTTTPGAPQGDIGNGSVASNGKIAMAGVTRKP-------SKRWRMVKAETNAVKVYRRAQVAASTREARRKVCTKRWGGLKVARNTTSYLMHALMVGSDEIDDDESSCSEGEERGVGGRVRGNRPRRGRREVGDAAGGSASENSSSIWCESSSSDDYSSSDKEGDSHSDGYASMYMQHDSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENNDAPPSKLS--------SYKRMAT-RNALSRSRTAELGKLFFAGSIVIAGLQEPLQKQLADQFVRDIPNVEVRIVADVASTIQLCQ 414
BLAST of mRNA_L-elsbetiae_contig844.17450.1 vs. uniprot
Match: D8LT87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT87_ECTSI) HSP 1 Score: 63.2 bits (152), Expect = 2.170e-8 Identity = 39/67 (58.21%), Postives = 51/67 (76.12%), Query Frame = 1 Query: 1 SLEERMQSNLEKSALRRESLRQDRAQKRRETKTLMEPPQDPAEEPRNIMTELYEIADVVALERDRVR 201 SL ER+QSN ++SA RRESLR DR K+R+++ E + EEP NIMTELY+I+D+V LER+RVR Sbjct: 18 SLAERIQSNKDRSARRRESLRLDRVLKKRQSQPRAEKSPELQEEPPNIMTELYDISDLVELERERVR 84 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig844.17450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig844.17450.1 >prot_L-elsbetiae_contig844.17450.1 ID=prot_L-elsbetiae_contig844.17450.1|Name=mRNA_L-elsbetiae_contig844.17450.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1472bp MQSNLEKSALRRESLRQDRAQKRRETKTLMEPPQDPAEEPRNIMTELYEIback to top mRNA from alignment at L-elsbetiae_contig844:13865..28397- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig844.17450.1 ID=mRNA_L-elsbetiae_contig844.17450.1|Name=mRNA_L-elsbetiae_contig844.17450.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=14533bp|location=Sequence derived from alignment at L-elsbetiae_contig844:13865..28397- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig844:13865..28397- >mRNA_L-elsbetiae_contig844.17450.1 ID=mRNA_L-elsbetiae_contig844.17450.1|Name=mRNA_L-elsbetiae_contig844.17450.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=8832bp|location=Sequence derived from alignment at L-elsbetiae_contig844:13865..28397- (Laminarionema elsbetiae ELsaHSoW15)back to top |