mRNA_L-elsbetiae_contig8424.17435.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8424.17435.1
Unique NamemRNA_L-elsbetiae_contig8424.17435.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8424.17435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8424contigL-elsbetiae_contig8424:313..962 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size270
Cds size267
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8424.17435.1prot_L-elsbetiae_contig8424.17435.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8424 313..961 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816924.9494128-CDS-L-elsbetiae_contig8424:312..3351622816924.9494128-CDS-L-elsbetiae_contig8424:312..335Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8424 313..335 +
1691683916.6380744-CDS-L-elsbetiae_contig8424:312..3351691683916.6380744-CDS-L-elsbetiae_contig8424:312..335Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8424 313..335 +
1622816924.9651558-CDS-L-elsbetiae_contig8424:485..6421622816924.9651558-CDS-L-elsbetiae_contig8424:485..642Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8424 486..642 +
1691683916.649157-CDS-L-elsbetiae_contig8424:485..6421691683916.649157-CDS-L-elsbetiae_contig8424:485..642Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8424 486..642 +
1622816924.978178-CDS-L-elsbetiae_contig8424:874..9611622816924.978178-CDS-L-elsbetiae_contig8424:874..961Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8424 875..961 +
1691683916.659514-CDS-L-elsbetiae_contig8424:874..9611691683916.659514-CDS-L-elsbetiae_contig8424:874..961Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8424 875..961 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8424.17435.1

>prot_L-elsbetiae_contig8424.17435.1 ID=prot_L-elsbetiae_contig8424.17435.1|Name=mRNA_L-elsbetiae_contig8424.17435.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=89bp
AVAQARRREETFAAEILVLLGAHKATKADVSVRLLIFRDGSVTKTVKDNL
EAHLGQSGSEVTVLNLQAQWAACDPLGANHDRVEDLRAG
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mRNA from alignment at L-elsbetiae_contig8424:313..962+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8424.17435.1 ID=mRNA_L-elsbetiae_contig8424.17435.1|Name=mRNA_L-elsbetiae_contig8424.17435.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=650bp|location=Sequence derived from alignment at L-elsbetiae_contig8424:313..962+ (Laminarionema elsbetiae ELsaHSoW15)
GCAGTCGCCCAGGCGCGACGAAGGTAGCTTCTAAGTTGATTACTTGTACT
TGATGAGTCTTTTTACGGGAGCGCGTGTTGCCTCCAGCTTTTATGCACAA
TATTGAAAGTGGTGTTGTTATCCTCCTTGCTTTTTCTCATTCGGAAATAT
TGGAAATGTCTACATATCTCTAGGGAGGAGACTTTCGCTGCTGAGATTTT
GGTCCTGCTCGGTGCCCATAAGGCCACCAAGGCCGACGTCAGCGTGCGCC
TCCTCATCTTCAGGGACGGCTCCGTAACGAAGACGGTGAAAGACAACTTG
GAAGCCCACCTCGGGCAGAGTGGTAGCGAGGTAAACGCCCTGTTGCTAAA
CTCTGAACATACATCCCCTGCAGGAATTCACTTCTGTATGTAACGCAGTA
CATAGTTTTCCACGCCAAAATGTTTCTATATACCCCGTATGTAGTAAGTG
TTGAGACCTGGTATGGTAGATGTGAGCATTTATTTACCGCTTTGCGGGTG
CTGATATCTCTCGTGGTACCTTGTTACTTCCTACTCTCCGTAATATTTTT
TCTTGAACACAGGTCACGGTCCTCAACCTGCAGGCGCAATGGGCGGCATG
CGACCCTTTGGGGGCCAATCACGACAGGGTGGAGGATCTGAGGGCAGGAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8424:313..962+

>mRNA_L-elsbetiae_contig8424.17435.1 ID=mRNA_L-elsbetiae_contig8424.17435.1|Name=mRNA_L-elsbetiae_contig8424.17435.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=534bp|location=Sequence derived from alignment at L-elsbetiae_contig8424:313..962+ (Laminarionema elsbetiae ELsaHSoW15)
GCAGTCGCCCAGGCGCGACGAAGGCAGTCGCCCAGGCGCGACGAAGGGAG
GAGACTTTCGCTGCTGAGATTTTGGTCCTGCTCGGTGCCCATAAGGCCAC
CAAGGCCGACGTCAGCGTGCGCCTCCTCATCTTCAGGGACGGCTCCGTAA
CGAAGACGGTGAAAGACAACTTGGAAGCCCACCTCGGGCAGAGTGGTAGC
GAGGGAGGAGACTTTCGCTGCTGAGATTTTGGTCCTGCTCGGTGCCCATA
AGGCCACCAAGGCCGACGTCAGCGTGCGCCTCCTCATCTTCAGGGACGGC
TCCGTAACGAAGACGGTGAAAGACAACTTGGAAGCCCACCTCGGGCAGAG
TGGTAGCGAGGTCACGGTCCTCAACCTGCAGGCGCAATGGGCGGCATGCG
ACCCTTTGGGGGCCAATCACGACAGGGTGGAGGATCTGAGGGCAGGAGTC
ACGGTCCTCAACCTGCAGGCGCAATGGGCGGCATGCGACCCTTTGGGGGC
CAATCACGACAGGGTGGAGGATCTGAGGGCAGGA
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