mRNA_L-elsbetiae_contig8418.17431.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8418.17431.1
Unique NamemRNA_L-elsbetiae_contig8418.17431.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8418.17431.1 vs. uniprot
Match: D7FVG8_ECTSI (Similar to fetal globin inducing factor n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVG8_ECTSI)

HSP 1 Score: 174 bits (442), Expect = 4.130e-48
Identity = 103/131 (78.63%), Postives = 111/131 (84.73%), Query Frame = 1 
Query:   10 AGDLEGMRLYVEAGGSVKKRDFFNNTALHRSASMGFTVITGYLLESGAEVDAVANDGWTPLHLACRWGRVGAIKAXXXXXXXXXXXXXXXRMPAELLKVEMSPRDRNETLQLLGCKPSMLGYRNASDIGDE 402
            AGDLEGMRLYVEAGGSVKKRDFFNNTALHRSASMGFT ITGYLLESGAEVDAVANDGWTPL              XXXXXXXXXXXXXXX +PAELLK+EMSPRDRNETL+LLG  PSM G+++A ++GDE
Sbjct:    2 AGDLEGMRLYVEAGGSVKKRDFFNNTALHRSASMGFTAITGYLLESGAEVDAVANDGWTPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPAELLKIEMSPRDRNETLKLLGSSPSMAGFKHAGEVGDE 132
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BLAST of mRNA_L-elsbetiae_contig8418.17431.1 vs. uniprot
Match: A0A8M1HFI5_BETSP (ankyrin repeat domain-containing protein SOWAHC isoform X4 n=1 Tax=Betta splendens TaxID=158456 RepID=A0A8M1HFI5_BETSP)

HSP 1 Score: 57.0 bits (136), Expect = 5.120e-5
Identity = 29/78 (37.18%), Postives = 47/78 (60.26%), Query Frame = 1 
Query:    4 SQAGDLEGM-RLYVEAGGSVKKRDFFNNTALHRSASMGFTVITGYLLESGAEVDAVANDGWTPLHLACRWGRVGAIKA 234
            S AG+++   +L+V+    + K+DF   TALH +A  G     G++++SGA+V+A  + G+T LHLAC  G    + A
Sbjct:  165 SAAGNMDAQHQLFVQEPSLLFKKDFITGTALHWAAKQGHQEAVGWMVDSGADVNARCHGGYTALHLACIHGHQHVVHA 242
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BLAST of mRNA_L-elsbetiae_contig8418.17431.1 vs. uniprot
Match: A0A8B7ZKS1_ACAPL (protein phosphatase 1 regulatory subunit 12A-like isoform X13 n=22 Tax=Valvatida TaxID=41166 RepID=A0A8B7ZKS1_ACAPL)

HSP 1 Score: 57.4 bits (137), Expect = 9.080e-5
Identity = 23/50 (46.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:   85 TALHRSASMGFTVITGYLLESGAEVDAVANDGWTPLHLACRWGRVGAIKA 234
            TALH +A+ G+  +   L+++GA VD + NDGWTPLH A  WG+  A+++
Sbjct:  212 TALHVAAAKGYIKVMSILIQAGANVDEIDNDGWTPLHAASHWGQKEAVES 261
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8418.17431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FVG8_ECTSI4.130e-4878.63Similar to fetal globin inducing factor n=2 Tax=Ec... [more]
A0A8M1HFI5_BETSP5.120e-537.18ankyrin repeat domain-containing protein SOWAHC is... [more]
A0A8B7ZKS1_ACAPL9.080e-546.00protein phosphatase 1 regulatory subunit 12A-like ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8418contigL-elsbetiae_contig8418:4418..7979 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score165.2
Seed ortholog evalue1.9e-38
Seed eggNOG ortholog2880.D7FVG8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.spermatogenesis
EggNOG OGsCOG0666@1,KOG0512@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-09_001030.1
Exons3
Model size1983
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8418.17431.1prot_L-elsbetiae_contig8418.17431.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8418 5996..7952 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816924.2605782-UTR-L-elsbetiae_contig8418:4417..59951622816924.2605782-UTR-L-elsbetiae_contig8418:4417..5995Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8418 4418..5995 -
1691683916.1353693-UTR-L-elsbetiae_contig8418:4417..59951691683916.1353693-UTR-L-elsbetiae_contig8418:4417..5995Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8418 4418..5995 -
1622816924.3045363-UTR-L-elsbetiae_contig8418:7952..79791622816924.3045363-UTR-L-elsbetiae_contig8418:7952..7979Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8418 7953..7979 -
1691683916.175965-UTR-L-elsbetiae_contig8418:7952..79791691683916.175965-UTR-L-elsbetiae_contig8418:7952..7979Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8418 7953..7979 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816924.271501-CDS-L-elsbetiae_contig8418:5995..60511622816924.271501-CDS-L-elsbetiae_contig8418:5995..6051Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8418 5996..6051 -
1691683916.146137-CDS-L-elsbetiae_contig8418:5995..60511691683916.146137-CDS-L-elsbetiae_contig8418:5995..6051Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8418 5996..6051 -
1622816924.2821984-CDS-L-elsbetiae_contig8418:6974..71411622816924.2821984-CDS-L-elsbetiae_contig8418:6974..7141Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8418 6975..7141 -
1691683916.155082-CDS-L-elsbetiae_contig8418:6974..71411691683916.155082-CDS-L-elsbetiae_contig8418:6974..7141Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8418 6975..7141 -
1622816924.2929327-CDS-L-elsbetiae_contig8418:7797..79521622816924.2929327-CDS-L-elsbetiae_contig8418:7797..7952Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8418 7798..7952 -
1691683916.1642475-CDS-L-elsbetiae_contig8418:7797..79521691683916.1642475-CDS-L-elsbetiae_contig8418:7797..7952Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8418 7798..7952 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8418.17431.1

>prot_L-elsbetiae_contig8418.17431.1 ID=prot_L-elsbetiae_contig8418.17431.1|Name=mRNA_L-elsbetiae_contig8418.17431.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=126bp
MRLYVEAGGSVKKRDFFNNTALHRSASMGFTVITGYLLESGAEVDAVAND
GWTPLHLACRWGRVGAIKALVQAGADVNMATKDGRMPAELLKVEMSPRDR
NETLQLLGCKPSMLGYRNASDIGDE*
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mRNA from alignment at L-elsbetiae_contig8418:4418..7979-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8418.17431.1 ID=mRNA_L-elsbetiae_contig8418.17431.1|Name=mRNA_L-elsbetiae_contig8418.17431.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3562bp|location=Sequence derived from alignment at L-elsbetiae_contig8418:4418..7979- (Laminarionema elsbetiae ELsaHSoW15)
TTTTCACAGGCCGGGGATTTAGAAGGGATGCGGCTTTACGTGGAAGCGGG
CGGGAGCGTGAAGAAGAGAGACTTTTTCAACAACACCGCGCTGCACCGAT
CGGCCTCCATGGGCTTCACGGTCATCACGGGGTATCTCTTGGAGTCGGGG
GCGGAGGTGGACGCGGTAGCTAATGATGGATGGTGAGGAGGACGGATGCA
GGCTGCAAGAGCGGGCCGACAGCGTGCGTGTGTGGTAGATTTTCTCCTGG
CGGACTATTGTTGTGATCGGTTCCAGCCCGCTGCTCTCTCTTAGTGCTCC
TTTTCCGCCGCATCATCCACTCTTTGTACACGTATTTAGGCGGAAGTCGA
CAAGAGGCATGGAATGTTTGGATACTTTTGGTGCGCTTTCAAAATCCTTT
CATCTGACTGGCGGAAGATCTGAGACGCAACAGCAGTCGAGAACGCGGCA
ATGTGATACCAACTGTGCAACTGTTGTAGCTTTCACGCGGTTCGCTGTCT
TGCCGCCGCTCGTACACACACCCCTTTTGTTGGAAGGCCTACTGCTGCCG
TGTATACATTTTGACATTTTTATGAAATCGTCCCGGGGGGTCAAGCGTAG
TCTACCCCCTCCCTGTCGAGAAAGCCAACCAAGACAGCGCCTTTAATCAC
GACAATTGTGCCCTATTGTAACACGAGCCGAAATATTTGAAACTGACAAA
AATGAGCCGACGCCTCTTTTTTGCGAGTTTCGCGGCTCAACGGACCGCAA
CGCTTGTTTTCATCCACGACCGTTCATTCTATGCGATCGCCCACTACTCA
CAACTTGCGTCCCCCCTGCCAATGCCATGCCAACACAGGACGCCGCTTCA
CTTGGCGTGTCGATGGGGCCGAGTGGGCGCGATCAAAGCCCTGGTGCAGG
CGGGCGCCGACGTGAACATGGCCACCAAAGACGGGCGAATGCCGGCGGAG
CTCTTGAAGGTCGAGATGTCTCCAAGGGATCGCAACGAAACCCTCCAGCT
CCTCGGTGAGTCACACGGGCGGCCGGGCATGCATTGTTGTTGTTTTTTCA
CGTTAAAAACCGTTCTGATCTCTCCACCCAGTACCCTCCCCACATACGTC
CGTACTTTTCCAACACTTGGTGCGATCAATTCCCCTGGTCACAAGCTAAC
TTGTACCTAGAAAAGGATATACGGAAATAAAACGGATCCGAAGGGTCAGC
AAAGCGATAAAAATCAAAGACAAATAGTGTGAAGCCCCCCGCTCCCCTCT
ACGCGCTATGCGAGGTAATGCATATACTCTCCAAATATTACGGAGTACAT
TTTTTTTACGCCTTTTTTTTTAAGTGAGGGTCTGGGTTTTACGAACAAAA
ACCTTTGTCGCAGAAGTCTCTGAAACCCAGAGCTCAAAACAATTTACGCG
AAGCCTCTCGGAGGAACCGCGACTTTTCCTCTCCCGCGGGCTTTAGGCAC
GCGCGAGCGTGCTACGAGGTTGCGTGCTAAATACAAGGTCCAAGCCTCTG
TTGAAGTAGGGAGCATGTGGGAGTGTTTTGTCTTGGGTGTACGTCTATTC
TACATATGTATATATTTTTAGCACGTCATTTAGTCTTAGTGTTGACGGTA
CGAACCGTTGAAAACTCTTCAGAGTGATACACTGTTATTTTGGGGTAAAA
ATGAGTCCAGTGACCCGGGGCCCCGTGAAGGGGGGTCATGGAGGATGGTT
GGCAAAACGTCCAACAGCGTGGGTCTGTGTGTGTGTGTCTCTCTCTATCT
CTGTCTGTCTGTCTGTCTCTCTCTGTGTACGGGTGTACGTGTCTGTGTTT
GTGTGCGTGCTACAGCAGCATCTTGTCTTTCAAATCATCGCTGATTTATC
GTTTTCGGGCTTACCCAAATTGCTTATGTGTTTTGGTGATGCGTCGATGC
TGCTTGCACCCCCGTGTTTCCCCCGCAGGGTGCAAACCGTCGATGCTCGG
TTACAGAAATGCAAGCGATATCGGCGACGAGTAAGGAGGAACGCCAAGCG
TTAGCGCGCGAGAGCCAAGGTACTTCCCGGGTGGAGGTTGAGAGAAAGGC
CTTTTGAAATCAAACAACTCTTCGCGGCTGTTTCTTAGCCTCCCATCTAT
GTATGTAGACGGCCAACGTCTTCCTAATCGACTAACCGGTTTGGAACAAA
AGCAGTTTCCGCTAGTGCTGTACAATAGCTCCAATCAGGCGCCCGTGTAG
TGTCGGGATCTAAGTTAGTTAGAGTGCGGGCACAATATACCGCCGTGGGG
GACAGACGTGCTAAGTATGAGAAACGCCACGGCATATTTTTGAGGTGTTC
CGGGTGAACGAAGTGGCTGTGTGAGGGCCCGCGAGCCCACGTTTTGCTGG
CTGAGCGCGAGGCGCTGTTTTGTTTTTATAAGTGTCTTTGTGTATGCCGA
AAGGCATGAGCTATGAACATGAAGGGATTAAGGTAGTGGTGCCCGAAAAT
TTTACAACTGTCTTTTACGTGATCGTTACCTTAATAGTGTGTCACTGCTC
GGAGTGTTTTCCAAAAGGATTTCCTTTGTTTGGGAAGCACTTGCTGTATT
TTCTGCCGCTGTAGGAAACCGCCAGGAATGCTTTTTGATTAAGAAAATGG
GGCAGCACCGCAAATCTGTATTTTAAGAAAGGGTTCTGGTTCTCGCTAAT
ACTCTATCTATTGGTTCTGGCCACGGGCGCTGCGGCTTTGGGGGCCACGC
AGAATTTGAATGAAGAAATTGGTTTAGGCCTCTAGTACATACACCTCGCC
CAGACAAATCGATGCTTCCGTATTCGACGGGCAGGCCACGTGCGTAGATT
TTCTCTCGACGGGAAGAAGGTCGCTGTACTCCGTTTTGGTTTGACCGAGG
AAACTAACGGGGCGATACGTGAGTTCCATTTTATGCATCGTGTACATACA
CAGATACGCTATGTGCTTCAGTCTTCCAGTAGGCAGCACGTTCGTTGCTG
ATTTGTAGCGTGCACCACGTGGTCGAGTGTGCTTAAGCCAGCCCCCCTTT
CCGTATCGGCTTGACATGTAAAATGTCATAACTTTCAGGCCCTCGTTGTC
AAGGTTACACAGAAGGTGGCGTGTTGTTTGTGTTCAGGCGTGGGTTTGGA
GAGTTAACATCGATATGAAACGAGCGGGACGGAGTTAACGCCATGTACTA
TGTAGTATCTGTGTGTTTCTTGATTTGTCGGTTTTCCGGTTTGGGGACCC
TGTCAAGGGCATGTGCAGGGTCGCTCGGTGAGACGGGACAAATCCCGCCC
CATAAGTTCCAACATGCCATTTTTTTACTTGCTATGTAGCGGCCTGCGTG
CTGATGGGCAATGCGCAAAACTGCCCAGTTTATGGCGTTGGAAGCAATTG
TAAGTTCGAAAATTGCCGCGTTTCGCCGATCGTCTCCTGCGTGCATATCG
ACGGACGCGAGTATGAAAGTAGTTCGTTTTCGGTCCTTCAAAGTGTCAGA
TAGATCTTAGAGGGCTAAAGAGAGCGCCTAGAGGAGAAGAGAAAGACAAA
TACGAACTGATCATAGCAGGAACATCATTTGGGAACACGATTGATTTATC
GCGTAACACCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8418:4418..7979-

>mRNA_L-elsbetiae_contig8418.17431.1 ID=mRNA_L-elsbetiae_contig8418.17431.1|Name=mRNA_L-elsbetiae_contig8418.17431.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=756bp|location=Sequence derived from alignment at L-elsbetiae_contig8418:4418..7979- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGCTTTACGTGGAAGCGGGCGGGAGCGTGAAGAAGAGAGACTTTTT
CAACAACACCGCGCTGCACCGATCGGCCTCCATGGGCTTCACGGTCATCA
CGGGGTATCTCTTGGAGTCGGGGGCGGAGGTGGACGCGGTAGCTAATGAT
GGATGATGCGGCTTTACGTGGAAGCGGGCGGGAGCGTGAAGAAGAGAGAC
TTTTTCAACAACACCGCGCTGCACCGATCGGCCTCCATGGGCTTCACGGT
CATCACGGGGTATCTCTTGGAGTCGGGGGCGGAGGTGGACGCGGTAGCTA
ATGATGGATGGACGCCGCTTCACTTGGCGTGTCGATGGGGCCGAGTGGGC
GCGATCAAAGCCCTGGTGCAGGCGGGCGCCGACGTGAACATGGCCACCAA
AGACGGGCGAATGCCGGCGGAGCTCTTGAAGGTCGAGATGTCTCCAAGGG
ATCGCAACGAAACCCTCCAGCTCCTCGGACGCCGCTTCACTTGGCGTGTC
GATGGGGCCGAGTGGGCGCGATCAAAGCCCTGGTGCAGGCGGGCGCCGAC
GTGAACATGGCCACCAAAGACGGGCGAATGCCGGCGGAGCTCTTGAAGGT
CGAGATGTCTCCAAGGGATCGCAACGAAACCCTCCAGCTCCTCGGGTGCA
AACCGTCGATGCTCGGTTACAGAAATGCAAGCGATATCGGCGACGAGTAA
GGTGCAAACCGTCGATGCTCGGTTACAGAAATGCAAGCGATATCGGCGAC
GAGTAA
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