mRNA_L-elsbetiae_contig8418.17430.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8418.17430.1
Unique NamemRNA_L-elsbetiae_contig8418.17430.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig8418.17430.1 vs. uniprot
Match: A0A6H5JK53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK53_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 9.020e-33
Identity = 101/308 (32.79%), Postives = 160/308 (51.95%), Query Frame = 3
Query:  252 DRQVIAAIEAGHTTGVAALLAAGASVNGSPALRFPPIVHAAGIGSVSMINCLVKHGANVNIGTFKTLKSSDGNAEMAKGCRALHVALKDGHVGAYRALLKAGADPNAADKQGHTPLMAICNTDSVPAAPRVVAAREXXXXXXXXXXXXIFGRTAMHFAVSREDGIGLIDALWSI---SPSTLTTPDVEGVTPLALAAGRGRCSSITHLLSLGATQ-PMKFRDMPLIGAVFENHVSAVGALLSAGLEPNGGPEALTYAMFGCLTHRCAKILRLLLSLCGEEEKKRWANLRNSDGPVLHIASSLDNLAAL 1163
            DR+++  +E G+ +GV  LLA GA+V+GS  L +PPI+ AA  G+ +M+  L+  GA++           +  A    G RA+H A+   +  A   LL+AGAD N+ D  G TPLM     D+       + ARE              G +AMH A     G+G ++ +  I   +PS L   D +G TP+ +AA RG+  ++ HLLS GA+   +  ++  ++ A    H   V  +L  G+   GG  A+  ++   +  R AKIL +L+S  GEE +++WA  R  DG  LH+A++  ++ A+
Sbjct:    8 DRRLLMEVEKGNLSGVKKLLAGGANVDGSRELEYPPIMGAARNGNAAMLKLLISKGADL-----------ETEARFPAGSRAIHAAISGENPTALSVLLEAGADFNSRDGAGETPLMLTALADT-----GALLARELFKVGASPFVKNADGMSAMHVAA----GLGNLEVMTVILTNTPSALNVLDNKGFTPMGIAALRGQRRAVFHLLSAGASDLGVDEQNAAILWACDGGHPRMVRMMLEHGINRVGGLGAIPNSIGVAVQGRQAKILEMLVSAEGEENRRKWAECRLRDGTPLHLAAAWVSVRAI 295          
BLAST of mRNA_L-elsbetiae_contig8418.17430.1 vs. uniprot
Match: A0A6H5JAW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAW5_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 1.510e-32
Identity = 105/314 (33.44%), Postives = 153/314 (48.73%), Query Frame = 3
Query:  252 DRQVIAAIEAGHTTGVAALLAAGASVNGSPALRFPPIVHAAGIGSVSMINCLVKHGANVNIGTFKTLKSSDGNAEMAKGCRALHVALKDGHVGAYRALLKAGADPNAADKQGHTPLMAICNTDSVPAAPRVVAAREXXXXXXXXXXXXIFGRTAMHFAVSREDGIGLIDALWSISPSTLTTPDVEGVTPLALAAGRGRCSSITHLLSLGATQPM---KFRDMPLIGAVFENHVSAVGALLSAGLEPNGGPEALTYAMFGCLTHRCAKILRLLLSLCGEEEKKRWANLRNSDGPVLHIASSLDNLAALCAACGRG 1184
            D+Q++  +  G+  GV   L  GAS++G    +  P+  AA  G   ++  L K GA +     + ++   G    + G  A+H A+    V + RALL AGADPNAAD  GHTPLM  C      AA R V  RE              G  A+H+A  R+D   +I  L   + +TL      G TPL  AA  G   S+  LLS GA+      K     L+GAV E     V  LL  G++  GG  A+  A++       AKIL +LL++ GEE +++WA +  ++  +LH A+S+ +L+ + A    G
Sbjct:    6 DKQLLVEVLKGNERGVEEQLDLGASLDGFDIWK--PLFAAARHGRAGVVTLLAKRGAELEATCPRDVRDDRGMYVYSSGSPAVHAAVYARRVDSLRALLDAGADPNAADATGHTPLMQACRLFG--AADRYVVVRELLRGGADPARQSDNGMIALHYASFRDD-TDVIGLLLPKAMATLNQDTGYGGTPLCCAASGGYKESVRCLLSFGASDNALWSKKGASALVGAVQEGRQEIVRILLDHGMDAVGGLGAVPKAIWTATRKGHAKILHMLLAVAGEETRRQWATMPYNESTLLHCATSVGSLSVMSAILSAG 314          
BLAST of mRNA_L-elsbetiae_contig8418.17430.1 vs. uniprot
Match: D7FVG9_ECTSI (Similar to ankyrin 2,3/unc44 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVG9_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 1.930e-25
Identity = 98/313 (31.31%), Postives = 141/313 (45.05%), Query Frame = 3
Query:  252 DRQVIAAIEAGHTTGVAALLAAGASVNGSPALRFPPIVHAAGIGSVSMINCLVKHGANVNIGTFKTLKSS-DGNAEMAKGCRALHVALKDGHVGAYRALLKAGADPNAADKQGHTPLMAICNTDSVPAAPRVVAAREXXXXXXXXXXXXIFGRTAMHFAVSREDGIGLIDALWSISPSTLTTPDVEGVTPLALAAGRGRCSSITHLLSLGATQPMKFRDM----------PLIGAVFENHVSAVGALLSAGLEPNGGPEALTYAMFGCLTHRCAKILRLLLSLCGEE--EKKRWANLRNSDGPVLHIASSLDN 1151
            D  + +++  G      ALLAAGASV+GS  L   P+  AA  G + M + L++ GA +++G  + + +   G+  MAKG R +H A+  G    +R L++AGADPN A+  G TPLM+ C    V    R    RE             +  TAMHFA  +   + LID L + +P+TL     +G TPL  AA                                   PL  A+   H + V  LL   L+P         A+   L  + A++L  L+S  GEE  +KK  A +  S  P+LHIA +  N
Sbjct:    4 DEALFSSVSRGDLARTQALLAAGASVDGSRKLDCCPLAVAAAQGDLDMTSLLIERGAKLDLGAPRDVHNRLTGSLTMAKGARPIHTAIGSGQYETFRLLMRAGADPNVANVDGFTPLMSACLVQRV-GPHRASIVRELLDGGADPAMVDTYDLTAMHFAAGK-GRVELIDMLAAKAPATLHRAGRDGFTPLGKAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSRSRCPLNVAMEARHWNVVDVLLD-NLDPIKSSVDFGTAISSALVTKRARLLSRLVSAVGEERKQKKSLAGMTFSSSPILHIAVAQAN 313          
BLAST of mRNA_L-elsbetiae_contig8418.17430.1 vs. uniprot
Match: D7G4M4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4M4_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 3.030e-21
Identity = 81/267 (30.34%), Postives = 129/267 (48.31%), Query Frame = 3
Query:  375 GIGSVSMINCLVKHGANVNIGTFKTLKSSDGNAEMAKGCRALHVALKDGHVGAYRALLKAGADPNAADKQGHTPLMAICNTDSVPAAPRVVAAREXXXXXXXXXXXXIFGRTAMHFAVSREDGIGLIDALWSI---SPSTLTTPDVEGVTPLALAAGRGRCSSITHLLSLGATQ-PMKFRDMPLIGAVFENHVSAVGALLSAGLEPNGGPEALTYAMFGCLTHRCAKILRLLLSLCGEEEKKRWANLRNSDGPVLHIASSLDNLAAL 1163
            G G+ +M+  L+  GAN+           +  A    G RA+H A+   +  A   LL+AGAD N+ D  G TPLM     D+       + ARE              G +AMH A     G+G ++ +  I   +PS L   D +G TP+ +AA RG+  ++ HLLS GA+   +  ++  +  A    H   V  +L  G+   GG  A+  ++   +  R AKIL +L+S  GE+ +++WA  R  DG  LH+A++  ++  +
Sbjct:  104 GNGNTAMLKLLISKGANL-----------ETEARFPAGSRAIHAAISGENPTALCVLLEAGADFNSRDGAGETPLMLTALADT-----GALLARELFKVGASPFVKNADGMSAMHVAA----GLGNLEVMTVILTNTPSVLNVLDNKGFTPMGIAALRGQRRAVFHLLSAGASDLGVDEQNAAIFWACDGGHPRMVRMMLEHGINRVGGLGAIPNSIGVAVQGRQAKILEMLVSAEGEDNRRKWAECRLRDGTPLHLAAAWVSVRVM 350          
BLAST of mRNA_L-elsbetiae_contig8418.17430.1 vs. uniprot
Match: D8LMA9_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA9_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 2.100e-19
Identity = 84/270 (31.11%), Postives = 128/270 (47.41%), Query Frame = 3
Query:  306 LLAAGASVNGSPALRFPPIVHAAGIGSVSMINCLVKHGANVNIGTFKTLKSS-DGNAEMA--KGCRALHVALKDGHVGAYRALLKAGADPNAADKQGHTPLMAICNTDSVPAAPRVVAAREXXXXXXXXXXXXIFGRTAMHFAVSREDGIGLIDALWSISPSTLTTPDVEGVTPLALAAGRGRCSSITHLLSLGATQPMKFRDMPLIG---AVFENHVSAVGALLSAGLEPNGGPEALTYAMFGCLTHRCAKILRLLLSLCGEEEKKRWA 1097
            +L  GASV+        PI  A   G + +I  LV  GA+     +     +  GN E +   G  AL++A   G+ GA   LL+ GA+PNA D  G TP+M  C T SV +  ++   R               G  A+H A  R D   ++  L S++PSTL      G+TPLA AA +G  S+++ L S GA+  + +    +     AV     ++V  LL  GL+  GG   +  A+   +   C   L +LL++ GE++++ WA
Sbjct:    1 MLEEGASVHDFGDAVVRPIAVATDYGLIDIIKALVATGADTEAPCWSDKDGAWKGNPEWSYRNGFTALYIAPAVGNAGALLVLLQLGANPNATDSDGGTPIMVTCGTGSVTST-KLTMMRSLLKAGADLAVENELGGLAIHIAAGRCDA-QVVALLLSMAPSTLNNATHNGLTPLAAAAEKGNESTMSLLFSEGASDSLPWATTGITALHKAVIVGMGTSVRFLLENGLDAVGGLPGIAEAIRISVWFGCIDGLEMLLNVHGEKKQEFWA 268          
BLAST of mRNA_L-elsbetiae_contig8418.17430.1 vs. uniprot
Match: D8LME9_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME9_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 1.180e-8
Identity = 33/81 (40.74%), Postives = 46/81 (56.79%), Query Frame = 3
Query:  369 AAGIGSVSMINCLVKHGANVNIGTFKTLKSSDGNAEMAKGCRALHVALKDGHVGAYRALLKAGADPNAADKQGHTPLMAIC 611
            AAG+G VS +  LV  GA ++  T + +   +G   +  G +A+H A+  G  G    LL+ GA+PNAAD  G TPLM  C
Sbjct:    3 AAGLGKVSFVEFLVARGAGLDSRTCRDVPRPEGGIILRMGSQAIHAAVHGGSPGVLYVLLRLGANPNAADDDGETPLMIAC 83          
BLAST of mRNA_L-elsbetiae_contig8418.17430.1 vs. uniprot
Match: D8LMB2_ECTSI (Ankyrin repeat-containing protein 10_01 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMB2_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 2.300e-8
Identity = 57/178 (32.02%), Postives = 88/178 (49.44%), Query Frame = 3
Query:  702 GRTAMHFAVSREDGIGLIDALWSISPSTLTTPDVEGVTPLALAAGRGRCSSITHLLSLGATQPMKFRDM---PLIGAVFENHVSAVGALLSAGLEPNGGPEALTYAMFGCLTHRCAKILRLLLSLCGEEEKKRWAN-----------LRNSDGP----------VLHIASSLDNLAAL 1163
            G  A+HFA +R +   +++ L S +PSTL   D  G +PL  AA +GR S+++ LLS GA+  + +       L  A+     ++V  LL  GLE  GG  A+  AM   + +    IL +LL++ G E+++ WAN           LR   GP          +LH A+   ++ AL
Sbjct:   35 GALAIHFAAARCE-TQVVELLLSKAPSTLNNADNHGYSPLGAAALQGRESTLSLLLSAGASDRIVWATKGVSALHEAIGIGKGNSVRFLLENGLEAVGGLPAIAGAMAVSVWYGYIDILEMLLNVEGGEKQEVWANQHVYFAHDGSLLRGVPGPTMATKFEWLPILHYAAKYCSIPAL 211          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8418.17430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JK53_9PHAE9.020e-3332.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAW5_9PHAE1.510e-3233.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVG9_ECTSI1.930e-2531.31Similar to ankyrin 2,3/unc44 n=2 Tax=Ectocarpus Ta... [more]
D7G4M4_ECTSI3.030e-2130.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LMA9_ECTSI2.100e-1931.11Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LME9_ECTSI1.180e-840.74Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LMB2_ECTSI2.300e-832.02Ankyrin repeat-containing protein 10_01 n=1 Tax=Ec... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8418contigL-elsbetiae_contig8418:1242..3575 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.8
Seed ortholog evalue1.6e-44
Seed eggNOG ortholog2880.D8LSK8
KEGG koko:K10380
KEGG Pathwayko04624,ko05205,map04624,map05205
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Exons2
Model size2099
Cds size981
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8418.17430.1prot_L-elsbetiae_contig8418.17430.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8418 1448..2428 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816924.1935668-UTR-L-elsbetiae_contig8418:1241..14471622816924.1935668-UTR-L-elsbetiae_contig8418:1241..1447Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8418 1242..1447 +
1691683916.0797064-UTR-L-elsbetiae_contig8418:1241..14471691683916.0797064-UTR-L-elsbetiae_contig8418:1241..1447Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8418 1242..1447 +
1622816924.2176855-UTR-L-elsbetiae_contig8418:2428..27431622816924.2176855-UTR-L-elsbetiae_contig8418:2428..2743Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8418 2429..2743 +
1691683916.1140954-UTR-L-elsbetiae_contig8418:2428..27431691683916.1140954-UTR-L-elsbetiae_contig8418:2428..2743Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8418 2429..2743 +
1622816924.2288158-UTR-L-elsbetiae_contig8418:2978..35751622816924.2288158-UTR-L-elsbetiae_contig8418:2978..3575Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8418 2979..3575 +
1691683916.1265137-UTR-L-elsbetiae_contig8418:2978..35751691683916.1265137-UTR-L-elsbetiae_contig8418:2978..3575Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8418 2979..3575 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816924.2047727-CDS-L-elsbetiae_contig8418:1447..24281622816924.2047727-CDS-L-elsbetiae_contig8418:1447..2428Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8418 1448..2428 +
1691683916.1024399-CDS-L-elsbetiae_contig8418:1447..24281691683916.1024399-CDS-L-elsbetiae_contig8418:1447..2428Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8418 1448..2428 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8418.17430.1

>prot_L-elsbetiae_contig8418.17430.1 ID=prot_L-elsbetiae_contig8418.17430.1|Name=mRNA_L-elsbetiae_contig8418.17430.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=327bp
MAYTAQQQRLRQEFRDRQVIAAIEAGHTTGVAALLAAGASVNGSPALRFP
PIVHAAGIGSVSMINCLVKHGANVNIGTFKTLKSSDGNAEMAKGCRALHV
ALKDGHVGAYRALLKAGADPNAADKQGHTPLMAICNTDSVPAAPRVVAAR
ELLEAGGDASRADIFGRTAMHFAVSREDGIGLIDALWSISPSTLTTPDVE
GVTPLALAAGRGRCSSITHLLSLGATQPMKFRDMPLIGAVFENHVSAVGA
LLSAGLEPNGGPEALTYAMFGCLTHRCAKILRLLLSLCGEEEKKRWANLR
NSDGPVLHIASSLDNLAALCAACGRG*
back to top

mRNA from alignment at L-elsbetiae_contig8418:1242..3575+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8418.17430.1 ID=mRNA_L-elsbetiae_contig8418.17430.1|Name=mRNA_L-elsbetiae_contig8418.17430.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2334bp|location=Sequence derived from alignment at L-elsbetiae_contig8418:1242..3575+ (Laminarionema elsbetiae ELsaHSoW15)
TCGCAGGAAGGCGAGAGGCAGCCGCGCCTGCTTGTGTTACTGCCTGCGTT AGCACCGCACCAAATAGTGCAGGCTCCCCCAAGCTGTCGGTCTCAAGCGG TCGAGTCGTTCGTGCTTGTCGGGAGCAACGCTGTTGCCTAATACTCGCGG TGTCGACTACTGTTTAGGGCGGTGTACTCCAAGATTTTTTTTTTCACGAA GAACATATGGCATACACGGCACAGCAGCAGCGGCTGCGGCAGGAGTTCCG TGACCGCCAAGTCATCGCCGCCATTGAGGCAGGGCACACAACAGGCGTCG CGGCACTCCTTGCAGCCGGAGCGAGCGTGAACGGATCACCTGCCCTACGC TTCCCACCCATCGTTCATGCTGCCGGGATAGGGAGCGTCAGCATGATCAA TTGTCTGGTCAAGCACGGTGCCAACGTCAACATCGGCACTTTCAAAACCC TGAAGAGTAGCGACGGAAATGCCGAAATGGCCAAAGGATGCCGCGCGCTT CACGTCGCCCTCAAAGACGGCCACGTGGGAGCCTACCGAGCGCTCCTGAA GGCAGGGGCCGATCCTAACGCCGCCGACAAGCAAGGCCACACCCCGCTGA TGGCGATCTGCAATACGGACAGTGTGCCTGCAGCTCCTCGCGTTGTGGCC GCCCGAGAACTCCTTGAGGCCGGGGGAGATGCCTCACGCGCCGACATATT CGGCCGTACGGCGATGCATTTTGCGGTCTCCCGCGAGGACGGAATCGGCC TGATCGACGCCCTGTGGTCCATCTCGCCTTCCACCCTGACAACACCCGAC GTTGAAGGGGTAACTCCGTTGGCCTTAGCGGCGGGACGCGGCCGATGTAG CTCCATCACACACCTGCTCTCGCTGGGGGCCACGCAACCGATGAAATTTC GCGACATGCCGCTCATCGGCGCGGTATTTGAAAATCATGTGAGTGCCGTG GGCGCATTGCTCAGTGCGGGATTGGAACCGAATGGCGGGCCTGAGGCGTT GACCTATGCCATGTTTGGTTGTCTTACGCATCGGTGTGCGAAAATTCTTC GCCTTCTGCTTTCCTTATGTGGAGAAGAAGAAAAGAAGCGCTGGGCAAAT CTTCGTAATTCTGATGGGCCAGTGCTTCACATTGCGTCATCGCTCGACAA TCTCGCCGCGCTGTGTGCTGCTTGCGGCCGGGGCTGATGAGACAGCAGTC GACATCAACGGGCGATCAGCGATGGACAGGGCGGGGGACTTCGTGGAGCT GGCTGGAGGTAGTACGAACCCGGCAGAGGATGCCGCCTGCCGTCGAATGC TAGAGCGCGCCCCGGCGTTTCGTGCTCTGTCATGGTCATATCCAACTGCC GGAGCAAGAGCACTCGTTGGCGATGACGCGGTCGCTTCTAGGCGGAACGA AGCACCCCTGGGGGTTCGCATCTTTCGACAGAGGAACCGAACGTTCTTCG TGCGGCATATTGGGAGGAGAGAACGGAGCACCGGCTGTCTCGTGGTTATG AGGTAATACTACAGTGTTGTGCTTTCGTACTTTTCGTGCATGTCCTTTTT TTTTTTTACTGACGTAGCGTCCCGATAACGAGAGTCCAAAAATGGAAGCT GCGTGACAGAGAGGGTAGTATCGGCGTCTAAGTGCCCAAAGAAAGCAGGT ACTACATCTTGATGCACTTACCCTCAACTAAATCCGCTCGCGTGTTTCAC CCAACTACCCCTGATCACTGCGTTGCGTGGTTGCCAGGCACGGGCTTGAA GGAGCAAATAAGGGATAGCCATTGGGGCCACGGGCAATCCTGGAAGTCGT GGGTAGACTGCCTCAGATCACGGGGCGATAGGGCTGACAGAGGCGGTCTT CTCCCTCGTTGAGCAGGACTACGCTCTGAAGGTTGTACAGCATGCAAGTG ATGCTTTGTGTGGACTCCCTGGGTCGGGAGAGTTGAGCACTGAAGGGTTT GTTCTTGATAATGTTGGCCGTGTAAATAGCTTGCTCTTCAGCTATCTATG TGGCAAACGGGGTACTTGCTTGGTACTCACTTGTAGACGTCAAGTTGGGT GTTGTGGACCAGCTTGAAGTTAGCCTAACCACCCAGAACATCAGATGTTG TCACCTGTGGCGGGTGCGTTTGTGCTGTTGACAGCGGATCTAAGGTGGGG ATTGCGGCCAAAGTGTGGCGATACGTTGTGTTTGACGAACATGGTTCCAA TTTTTGCGAATGGGCACCTCTTAAGGGTGGACCACGTAATTGAAGTTGCA TTGAATAGACTGCTGGCTCTGATTTCTTCCTCTTTGAAATCAGTACAAAA AGAACACGTGTTGGGCACCAAAATTTCTATGCGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig8418:1242..3575+

>mRNA_L-elsbetiae_contig8418.17430.1 ID=mRNA_L-elsbetiae_contig8418.17430.1|Name=mRNA_L-elsbetiae_contig8418.17430.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1962bp|location=Sequence derived from alignment at L-elsbetiae_contig8418:1242..3575+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCATACACGGCACAGCAGCAGCGGCTGCGGCAGGAGTTCCGTGACCG
CCAAGTCATCGCCGCCATTGAGGCAGGGCACACAACAGGCGTCGCGGCAC
TCCTTGCAGCCGGAGCGAGCGTGAACGGATCACCTGCCCTACGCTTCCCA
CCCATCGTTCATGCTGCCGGGATAGGGAGCGTCAGCATGATCAATTGTCT
GGTCAAGCACGGTGCCAACGTCAACATCGGCACTTTCAAAACCCTGAAGA
GTAGCGACGGAAATGCCGAAATGGCCAAAGGATGCCGCGCGCTTCACGTC
GCCCTCAAAGACGGCCACGTGGGAGCCTACCGAGCGCTCCTGAAGGCAGG
GGCCGATCCTAACGCCGCCGACAAGCAAGGCCACACCCCGCTGATGGCGA
TCTGCAATACGGACAGTGTGCCTGCAGCTCCTCGCGTTGTGGCCGCCCGA
GAACTCCTTGAGGCCGGGGGAGATGCCTCACGCGCCGACATATTCGGCCG
TACGGCGATGCATTTTGCGGTCTCCCGCGAGGACGGAATCGGCCTGATCG
ACGCCCTGTGGTCCATCTCGCCTTCCACCCTGACAACACCCGACGTTGAA
GGGGTAACTCCGTTGGCCTTAGCGGCGGGACGCGGCCGATGTAGCTCCAT
CACACACCTGCTCTCGCTGGGGGCCACGCAACCGATGAAATTTCGCGACA
TGCCGCTCATCGGCGCGGTATTTGAAAATCATGTGAGTGCCGTGGGCGCA
TTGCTCAGTGCGGGATTGGAACCGAATGGCGGGCCTGAGGCGTTGACCTA
TGCCATGTTTGGTTGTCTTACGCATCGGTGTGCGAAAATTCTTCGCCTTC
TGCTTTCCTTATGTGGAGAAGAAGAAAAGAAGCGCTGGGCAAATCTTCGT
AATTCTGATGGGCCAGTGCTTCACATTGCGTCATCGCTCGACAATCTCGC
CGCGCTGTGTGCTGCTTGCGGCCGGGGCTGAATGGCATACACGGCACAGC
AGCAGCGGCTGCGGCAGGAGTTCCGTGACCGCCAAGTCATCGCCGCCATT
GAGGCAGGGCACACAACAGGCGTCGCGGCACTCCTTGCAGCCGGAGCGAG
CGTGAACGGATCACCTGCCCTACGCTTCCCACCCATCGTTCATGCTGCCG
GGATAGGGAGCGTCAGCATGATCAATTGTCTGGTCAAGCACGGTGCCAAC
GTCAACATCGGCACTTTCAAAACCCTGAAGAGTAGCGACGGAAATGCCGA
AATGGCCAAAGGATGCCGCGCGCTTCACGTCGCCCTCAAAGACGGCCACG
TGGGAGCCTACCGAGCGCTCCTGAAGGCAGGGGCCGATCCTAACGCCGCC
GACAAGCAAGGCCACACCCCGCTGATGGCGATCTGCAATACGGACAGTGT
GCCTGCAGCTCCTCGCGTTGTGGCCGCCCGAGAACTCCTTGAGGCCGGGG
GAGATGCCTCACGCGCCGACATATTCGGCCGTACGGCGATGCATTTTGCG
GTCTCCCGCGAGGACGGAATCGGCCTGATCGACGCCCTGTGGTCCATCTC
GCCTTCCACCCTGACAACACCCGACGTTGAAGGGGTAACTCCGTTGGCCT
TAGCGGCGGGACGCGGCCGATGTAGCTCCATCACACACCTGCTCTCGCTG
GGGGCCACGCAACCGATGAAATTTCGCGACATGCCGCTCATCGGCGCGGT
ATTTGAAAATCATGTGAGTGCCGTGGGCGCATTGCTCAGTGCGGGATTGG
AACCGAATGGCGGGCCTGAGGCGTTGACCTATGCCATGTTTGGTTGTCTT
ACGCATCGGTGTGCGAAAATTCTTCGCCTTCTGCTTTCCTTATGTGGAGA
AGAAGAAAAGAAGCGCTGGGCAAATCTTCGTAATTCTGATGGGCCAGTGC
TTCACATTGCGTCATCGCTCGACAATCTCGCCGCGCTGTGTGCTGCTTGC
GGCCGGGGCTGA
back to top