mRNA_L-elsbetiae_contig8418.17430.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig8418.17430.1 vs. uniprot
Match: A0A6H5JK53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK53_9PHAE) HSP 1 Score: 141 bits (355), Expect = 9.020e-33 Identity = 101/308 (32.79%), Postives = 160/308 (51.95%), Query Frame = 3 Query: 252 DRQVIAAIEAGHTTGVAALLAAGASVNGSPALRFPPIVHAAGIGSVSMINCLVKHGANVNIGTFKTLKSSDGNAEMAKGCRALHVALKDGHVGAYRALLKAGADPNAADKQGHTPLMAICNTDSVPAAPRVVAAREXXXXXXXXXXXXIFGRTAMHFAVSREDGIGLIDALWSI---SPSTLTTPDVEGVTPLALAAGRGRCSSITHLLSLGATQ-PMKFRDMPLIGAVFENHVSAVGALLSAGLEPNGGPEALTYAMFGCLTHRCAKILRLLLSLCGEEEKKRWANLRNSDGPVLHIASSLDNLAAL 1163 DR+++ +E G+ +GV LLA GA+V+GS L +PPI+ AA G+ +M+ L+ GA++ + A G RA+H A+ + A LL+AGAD N+ D G TPLM D+ + ARE G +AMH A G+G ++ + I +PS L D +G TP+ +AA RG+ ++ HLLS GA+ + ++ ++ A H V +L G+ GG A+ ++ + R AKIL +L+S GEE +++WA R DG LH+A++ ++ A+ Sbjct: 8 DRRLLMEVEKGNLSGVKKLLAGGANVDGSRELEYPPIMGAARNGNAAMLKLLISKGADL-----------ETEARFPAGSRAIHAAISGENPTALSVLLEAGADFNSRDGAGETPLMLTALADT-----GALLARELFKVGASPFVKNADGMSAMHVAA----GLGNLEVMTVILTNTPSALNVLDNKGFTPMGIAALRGQRRAVFHLLSAGASDLGVDEQNAAILWACDGGHPRMVRMMLEHGINRVGGLGAIPNSIGVAVQGRQAKILEMLVSAEGEENRRKWAECRLRDGTPLHLAAAWVSVRAI 295
BLAST of mRNA_L-elsbetiae_contig8418.17430.1 vs. uniprot
Match: A0A6H5JAW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAW5_9PHAE) HSP 1 Score: 138 bits (348), Expect = 1.510e-32 Identity = 105/314 (33.44%), Postives = 153/314 (48.73%), Query Frame = 3 Query: 252 DRQVIAAIEAGHTTGVAALLAAGASVNGSPALRFPPIVHAAGIGSVSMINCLVKHGANVNIGTFKTLKSSDGNAEMAKGCRALHVALKDGHVGAYRALLKAGADPNAADKQGHTPLMAICNTDSVPAAPRVVAAREXXXXXXXXXXXXIFGRTAMHFAVSREDGIGLIDALWSISPSTLTTPDVEGVTPLALAAGRGRCSSITHLLSLGATQPM---KFRDMPLIGAVFENHVSAVGALLSAGLEPNGGPEALTYAMFGCLTHRCAKILRLLLSLCGEEEKKRWANLRNSDGPVLHIASSLDNLAALCAACGRG 1184 D+Q++ + G+ GV L GAS++G + P+ AA G ++ L K GA + + ++ G + G A+H A+ V + RALL AGADPNAAD GHTPLM C AA R V RE G A+H+A R+D +I L + +TL G TPL AA G S+ LLS GA+ K L+GAV E V LL G++ GG A+ A++ AKIL +LL++ GEE +++WA + ++ +LH A+S+ +L+ + A G Sbjct: 6 DKQLLVEVLKGNERGVEEQLDLGASLDGFDIWK--PLFAAARHGRAGVVTLLAKRGAELEATCPRDVRDDRGMYVYSSGSPAVHAAVYARRVDSLRALLDAGADPNAADATGHTPLMQACRLFG--AADRYVVVRELLRGGADPARQSDNGMIALHYASFRDD-TDVIGLLLPKAMATLNQDTGYGGTPLCCAASGGYKESVRCLLSFGASDNALWSKKGASALVGAVQEGRQEIVRILLDHGMDAVGGLGAVPKAIWTATRKGHAKILHMLLAVAGEETRRQWATMPYNESTLLHCATSVGSLSVMSAILSAG 314
BLAST of mRNA_L-elsbetiae_contig8418.17430.1 vs. uniprot
Match: D7FVG9_ECTSI (Similar to ankyrin 2,3/unc44 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVG9_ECTSI) HSP 1 Score: 118 bits (295), Expect = 1.930e-25 Identity = 98/313 (31.31%), Postives = 141/313 (45.05%), Query Frame = 3 Query: 252 DRQVIAAIEAGHTTGVAALLAAGASVNGSPALRFPPIVHAAGIGSVSMINCLVKHGANVNIGTFKTLKSS-DGNAEMAKGCRALHVALKDGHVGAYRALLKAGADPNAADKQGHTPLMAICNTDSVPAAPRVVAAREXXXXXXXXXXXXIFGRTAMHFAVSREDGIGLIDALWSISPSTLTTPDVEGVTPLALAAGRGRCSSITHLLSLGATQPMKFRDM----------PLIGAVFENHVSAVGALLSAGLEPNGGPEALTYAMFGCLTHRCAKILRLLLSLCGEE--EKKRWANLRNSDGPVLHIASSLDN 1151 D + +++ G ALLAAGASV+GS L P+ AA G + M + L++ GA +++G + + + G+ MAKG R +H A+ G +R L++AGADPN A+ G TPLM+ C V R RE + TAMHFA + + LID L + +P+TL +G TPL AA PL A+ H + V LL L+P A+ L + A++L L+S GEE +KK A + S P+LHIA + N Sbjct: 4 DEALFSSVSRGDLARTQALLAAGASVDGSRKLDCCPLAVAAAQGDLDMTSLLIERGAKLDLGAPRDVHNRLTGSLTMAKGARPIHTAIGSGQYETFRLLMRAGADPNVANVDGFTPLMSACLVQRV-GPHRASIVRELLDGGADPAMVDTYDLTAMHFAAGK-GRVELIDMLAAKAPATLHRAGRDGFTPLGKAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSRSRCPLNVAMEARHWNVVDVLLD-NLDPIKSSVDFGTAISSALVTKRARLLSRLVSAVGEERKQKKSLAGMTFSSSPILHIAVAQAN 313
BLAST of mRNA_L-elsbetiae_contig8418.17430.1 vs. uniprot
Match: D7G4M4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4M4_ECTSI) HSP 1 Score: 108 bits (269), Expect = 3.030e-21 Identity = 81/267 (30.34%), Postives = 129/267 (48.31%), Query Frame = 3 Query: 375 GIGSVSMINCLVKHGANVNIGTFKTLKSSDGNAEMAKGCRALHVALKDGHVGAYRALLKAGADPNAADKQGHTPLMAICNTDSVPAAPRVVAAREXXXXXXXXXXXXIFGRTAMHFAVSREDGIGLIDALWSI---SPSTLTTPDVEGVTPLALAAGRGRCSSITHLLSLGATQ-PMKFRDMPLIGAVFENHVSAVGALLSAGLEPNGGPEALTYAMFGCLTHRCAKILRLLLSLCGEEEKKRWANLRNSDGPVLHIASSLDNLAAL 1163 G G+ +M+ L+ GAN+ + A G RA+H A+ + A LL+AGAD N+ D G TPLM D+ + ARE G +AMH A G+G ++ + I +PS L D +G TP+ +AA RG+ ++ HLLS GA+ + ++ + A H V +L G+ GG A+ ++ + R AKIL +L+S GE+ +++WA R DG LH+A++ ++ + Sbjct: 104 GNGNTAMLKLLISKGANL-----------ETEARFPAGSRAIHAAISGENPTALCVLLEAGADFNSRDGAGETPLMLTALADT-----GALLARELFKVGASPFVKNADGMSAMHVAA----GLGNLEVMTVILTNTPSVLNVLDNKGFTPMGIAALRGQRRAVFHLLSAGASDLGVDEQNAAIFWACDGGHPRMVRMMLEHGINRVGGLGAIPNSIGVAVQGRQAKILEMLVSAEGEDNRRKWAECRLRDGTPLHLAAAWVSVRVM 350
BLAST of mRNA_L-elsbetiae_contig8418.17430.1 vs. uniprot
Match: D8LMA9_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA9_ECTSI) HSP 1 Score: 100 bits (249), Expect = 2.100e-19 Identity = 84/270 (31.11%), Postives = 128/270 (47.41%), Query Frame = 3 Query: 306 LLAAGASVNGSPALRFPPIVHAAGIGSVSMINCLVKHGANVNIGTFKTLKSS-DGNAEMA--KGCRALHVALKDGHVGAYRALLKAGADPNAADKQGHTPLMAICNTDSVPAAPRVVAAREXXXXXXXXXXXXIFGRTAMHFAVSREDGIGLIDALWSISPSTLTTPDVEGVTPLALAAGRGRCSSITHLLSLGATQPMKFRDMPLIG---AVFENHVSAVGALLSAGLEPNGGPEALTYAMFGCLTHRCAKILRLLLSLCGEEEKKRWA 1097 +L GASV+ PI A G + +I LV GA+ + + GN E + G AL++A G+ GA LL+ GA+PNA D G TP+M C T SV + ++ R G A+H A R D ++ L S++PSTL G+TPLA AA +G S+++ L S GA+ + + + AV ++V LL GL+ GG + A+ + C L +LL++ GE++++ WA Sbjct: 1 MLEEGASVHDFGDAVVRPIAVATDYGLIDIIKALVATGADTEAPCWSDKDGAWKGNPEWSYRNGFTALYIAPAVGNAGALLVLLQLGANPNATDSDGGTPIMVTCGTGSVTST-KLTMMRSLLKAGADLAVENELGGLAIHIAAGRCDA-QVVALLLSMAPSTLNNATHNGLTPLAAAAEKGNESTMSLLFSEGASDSLPWATTGITALHKAVIVGMGTSVRFLLENGLDAVGGLPGIAEAIRISVWFGCIDGLEMLLNVHGEKKQEFWA 268
BLAST of mRNA_L-elsbetiae_contig8418.17430.1 vs. uniprot
Match: D8LME9_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME9_ECTSI) HSP 1 Score: 63.2 bits (152), Expect = 1.180e-8 Identity = 33/81 (40.74%), Postives = 46/81 (56.79%), Query Frame = 3 Query: 369 AAGIGSVSMINCLVKHGANVNIGTFKTLKSSDGNAEMAKGCRALHVALKDGHVGAYRALLKAGADPNAADKQGHTPLMAIC 611 AAG+G VS + LV GA ++ T + + +G + G +A+H A+ G G LL+ GA+PNAAD G TPLM C Sbjct: 3 AAGLGKVSFVEFLVARGAGLDSRTCRDVPRPEGGIILRMGSQAIHAAVHGGSPGVLYVLLRLGANPNAADDDGETPLMIAC 83
BLAST of mRNA_L-elsbetiae_contig8418.17430.1 vs. uniprot
Match: D8LMB2_ECTSI (Ankyrin repeat-containing protein 10_01 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMB2_ECTSI) HSP 1 Score: 67.4 bits (163), Expect = 2.300e-8 Identity = 57/178 (32.02%), Postives = 88/178 (49.44%), Query Frame = 3 Query: 702 GRTAMHFAVSREDGIGLIDALWSISPSTLTTPDVEGVTPLALAAGRGRCSSITHLLSLGATQPMKFRDM---PLIGAVFENHVSAVGALLSAGLEPNGGPEALTYAMFGCLTHRCAKILRLLLSLCGEEEKKRWAN-----------LRNSDGP----------VLHIASSLDNLAAL 1163 G A+HFA +R + +++ L S +PSTL D G +PL AA +GR S+++ LLS GA+ + + L A+ ++V LL GLE GG A+ AM + + IL +LL++ G E+++ WAN LR GP +LH A+ ++ AL Sbjct: 35 GALAIHFAAARCE-TQVVELLLSKAPSTLNNADNHGYSPLGAAALQGRESTLSLLLSAGASDRIVWATKGVSALHEAIGIGKGNSVRFLLENGLEAVGGLPAIAGAMAVSVWYGYIDILEMLLNVEGGEKQEVWANQHVYFAHDGSLLRGVPGPTMATKFEWLPILHYAAKYCSIPAL 211 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8418.17430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8418.17430.1 >prot_L-elsbetiae_contig8418.17430.1 ID=prot_L-elsbetiae_contig8418.17430.1|Name=mRNA_L-elsbetiae_contig8418.17430.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=327bp MAYTAQQQRLRQEFRDRQVIAAIEAGHTTGVAALLAAGASVNGSPALRFPback to top mRNA from alignment at L-elsbetiae_contig8418:1242..3575+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig8418.17430.1 ID=mRNA_L-elsbetiae_contig8418.17430.1|Name=mRNA_L-elsbetiae_contig8418.17430.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2334bp|location=Sequence derived from alignment at L-elsbetiae_contig8418:1242..3575+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig8418:1242..3575+ >mRNA_L-elsbetiae_contig8418.17430.1 ID=mRNA_L-elsbetiae_contig8418.17430.1|Name=mRNA_L-elsbetiae_contig8418.17430.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1962bp|location=Sequence derived from alignment at L-elsbetiae_contig8418:1242..3575+ (Laminarionema elsbetiae ELsaHSoW15)back to top |