mRNA_L-elsbetiae_contig8417.17429.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8417.17429.1
Unique NamemRNA_L-elsbetiae_contig8417.17429.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig8417.17429.1 vs. uniprot
Match: D8LID8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LID8_ECTSI)

HSP 1 Score: 215 bits (548), Expect = 1.130e-69
Identity = 102/130 (78.46%), Postives = 115/130 (88.46%), Query Frame = 1
Query:    1 AAKDKESLKSHGITHILTVNGKEPAFNGDFEYKVINFGGDNGPLTPHLDESLTFVENGAEDGGVLIHCTHGTGRSAAMAIAAAMRASGKGTPAGIGGFPEAFRLVKSRRPGTDPPMPFQQELGEWEKSRS 390
            AAKDKESLK+HG+TH+LTVNGKEPAF  DF+YKVI FGG++GPLTPHL ESL+FV+ G   GGVLIHCTHGTGRSAAMAIAAAM+ +GKGTPAG+G F EAFR+VK RRPGTDPPM FQQELGEW  S+S
Sbjct:   34 AAKDKESLKAHGVTHVLTVNGKEPAFKDDFKYKVIKFGGEDGPLTPHLSESLSFVDAGVAAGGVLIHCTHGTGRSAAMAIAAAMKENGKGTPAGVGDFAEAFRVVKLRRPGTDPPMTFQQELGEWASSKS 163          
BLAST of mRNA_L-elsbetiae_contig8417.17429.1 vs. uniprot
Match: A0A6H5JRY3_9PHAE (Tyrosine-protein phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY3_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 4.880e-44
Identity = 70/89 (78.65%), Postives = 80/89 (89.89%), Query Frame = 1
Query:    1 AAKDKESLKSHGITHILTVNGKEPAFNGDFEYKVINFGGDNGPLTPHLDESLTFVENGAEDGGVLIHCTHGTGRSAAMAIAAAMRASGK 267
            AA+DKESLK+HG+TH+LTVNGKEPAF  DFEY+VI FGGD+GPLTPHL ESL FV++G   GGVLIHCTHGTGRSAAMAIAAAM+ +GK
Sbjct:   34 AARDKESLKAHGVTHVLTVNGKEPAFKDDFEYRVIKFGGDDGPLTPHLSESLPFVDDGVAAGGVLIHCTHGTGRSAAMAIAAAMKENGK 122          
BLAST of mRNA_L-elsbetiae_contig8417.17429.1 vs. uniprot
Match: A0A835Z9I7_9STRA (Protein-tyrosine phosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9I7_9STRA)

HSP 1 Score: 104 bits (260), Expect = 7.110e-26
Identity = 61/146 (41.78%), Postives = 78/146 (53.42%), Query Frame = 1
Query:    1 AAKDKESLKSHGITHILTVNGKEPAFNGDFEYKVINFGGDNGPLTPHLDESLTFVENGAEDGG-VLIHCTHGTGRSAAMAIAAAMRA----------SGKGTPAGIGGF-------PEAFRLVKSRRPGTDPPMPFQQELGEWEKS 384
            AA DKESLK  GITH+LT NG+ P    DF+YK ++       + P L  +L F++     GG VL+HCTHGTGRSAA+ IA  M+           S      G+ G          A  +VK RRPGTDPP P+  +L  W K+
Sbjct:   26 AALDKESLKGMGITHVLTANGEAPLHPNDFKYKTLSVTEKGDGVAPVLPGALQFIDEATAGGGSVLVHCTHGTGRSAALVIAHVMQTETEVGAQPLLSAAYGIVGVAGMIGDNVDAAAALSIVKERRPGTDPPTPYSAQLDAWAKN 171          
BLAST of mRNA_L-elsbetiae_contig8417.17429.1 vs. uniprot
Match: A0A835ZF71_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF71_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 6.720e-15
Identity = 42/90 (46.67%), Postives = 53/90 (58.89%), Query Frame = 1
Query:    1 AAKDKESLKSHGITHILTVNGKEPAFNGDFEYKVINFGGDNGPLTPHLDESLTFVENGAE--DGGVLIHCTHGTGRSAAMAIAAAMRASG 264
            AA DK SL  +GITH+LT  G  P F  DF+Y VI      GPL   L+  L F++   +  DGGVL+HC  G GRS A+ +AA M+  G
Sbjct:   15 AADDKASLIVNGITHVLTTTGVAPRFPDDFKYHVIALSDGGGPLAGELEGCLAFIDEARKGGDGGVLVHCGGGAGRSGAVVVAAVMKEKG 104          
BLAST of mRNA_L-elsbetiae_contig8417.17429.1 vs. uniprot
Match: A0A0A0KCI3_CUCSA (Uncharacterized protein n=1 Tax=Cucumis sativus TaxID=3659 RepID=A0A0A0KCI3_CUCSA)

HSP 1 Score: 73.6 bits (179), Expect = 1.140e-13
Identity = 47/128 (36.72%), Postives = 64/128 (50.00%), Query Frame = 1
Query:    1 AAKDKESLKSHGITHILTVN-GKEPAFNGDFEYKVIN-FGGDNGPLTPHLDESLTFVENGAEDGGVLIHCTHGTGRSAAMAIAAAMRASGKGTPAGIGGFPEAFRLVKSRRPGTDPPMPFQQELGEWE 378
            AA +K+ LK   ITHILTV     PA   DF YKV+      +  +  H D+  TF++ G   GGVL+HC  G  RS  + +A  M+  G           +A   VKSRRP   P + F  +L ++E
Sbjct:   45 AAHNKDQLKKLSITHILTVACSMPPADPNDFVYKVVRVLDTRDVDIKQHFDDCFTFIDEGRNSGGVLVHCFAGISRSVTITVAYLMKKRGMN-------LTQALEHVKSRRPQAAPNVGFMVQLKDFE 165          
BLAST of mRNA_L-elsbetiae_contig8417.17429.1 vs. uniprot
Match: A0A8J4V4W3_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4V4W3_9MYCE)

HSP 1 Score: 74.3 bits (181), Expect = 6.810e-13
Identity = 45/125 (36.00%), Postives = 65/125 (52.00%), Query Frame = 1
Query:   10 DKESLKSHGITHILTVNGKEPAFNGDFEYKVINFGG-DNGPLTPHLDESLTFVENGAEDGGVLIHCTHGTGRSAAMAIAAAMRASGKGTPAGIGGFPEAFRLVKSRRPGTDPPMPFQQELGEWEK 381
            +K  LK H ITHILT+   +P +N  F+YK I+    D  P+  +  E   F++ G ++GGVLIHC  G  RSA+  IA  M  +          F EAF +    RP   P   F ++L ++E+
Sbjct:  523 NKNWLKEHNITHILTIAHFKPLYNHLFKYKCIDIDDVDEAPIGKYFKEMNEFIDEGRKEGGVLIHCRAGVSRSASATIAYIMYHNNVS-------FQEAFDITSKGRPRICPNRGFVEQLKQFEQ 640          
BLAST of mRNA_L-elsbetiae_contig8417.17429.1 vs. uniprot
Match: R7TE97_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7TE97_CAPTE)

HSP 1 Score: 66.2 bits (160), Expect = 1.010e-10
Identity = 45/123 (36.59%), Postives = 61/123 (49.59%), Query Frame = 1
Query:    4 AKDKESLKSHGITHILTVNGK-EPAFNGDFEYKVINFGG-DNGPLTPHLDESLTFVENGAEDGGVLIHCTHGTGRSAAMAIAAAMRASGKGTPAGIGGFPEAFRLVKSRRPGTDPPMPFQQEL 366
            A D + L+   +THIL V  + E  F  DF YK +N        +  +  E   F+E G + G VL+HC  G  RSA++ I   M+  GK        F  A+ LVKS+RP T P   F Q+L
Sbjct:   78 AADFDLLREKCVTHILNVACRVENFFPDDFTYKRLNILDLPETNIVDYFPECFEFIEEGMQQGRVLVHCNAGVSRSASIVIGYLMQREGKK-------FQSAYDLVKSQRPATRPNDGFMQQL 193          
BLAST of mRNA_L-elsbetiae_contig8417.17429.1 vs. uniprot
Match: A0A8C6SBY5_9GOBI (Uncharacterized protein n=1 Tax=Neogobius melanostomus TaxID=47308 RepID=A0A8C6SBY5_9GOBI)

HSP 1 Score: 65.5 bits (158), Expect = 1.110e-10
Identity = 40/128 (31.25%), Postives = 63/128 (49.22%), Query Frame = 1
Query:    4 AKDKESLKSHGITHILTVNGKEPAFNGDFEYKVINFGGDNGPLTPHLDESLTFVENGAEDG-GVLIHCTHGTGRSAAMAIAAAMRASGKGTPAGIGGFPEAFRLVKSRRPGTDPPMPFQQELGEWEKS 384
            A+DKE LK+H ITHIL+++        D  Y  I+    +   T H  +S+ F+      G G L+HC  G  RS  + +A  M  +G+G       + E    V++ RP   P + F ++L E+E +
Sbjct:   21 AQDKELLKAHNITHILSIHDNAAPILEDIAYLCIS--ASDHSKTQHFKDSIMFIHESRMKGEGCLVHCVAGVSRSVTLVVAYIMTVTGRG-------WVECLAAVRAARPCAGPNLGFLRQLEEFENT 139          
BLAST of mRNA_L-elsbetiae_contig8417.17429.1 vs. uniprot
Match: A0A139A950_GONPJ (Protein-serine/threonine phosphatase (Fragment) n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139A950_GONPJ)

HSP 1 Score: 65.9 bits (159), Expect = 1.740e-10
Identity = 46/136 (33.82%), Postives = 69/136 (50.74%), Query Frame = 1
Query:    1 AAKDKESLKSHGITHILTVNGK------EPAFNGDFEYKVINFGGDNGPLT---PHLDESLTFVENGAEDGG-VLIHCTHGTGRSAAMAIAAAMRASGKGTPAGIGGFPEAFRLVKSRRPGTDPPMPFQQELGEWE 378
            A+K +++L+SHGITHI+ V         +P F G+F Y  IN    + PL    PH  +S  F+E+    GG VL+HC  G  RS A+ +   M             F  A+ LV+++R   +P   F+ +L E+E
Sbjct:   24 ASKQRDALRSHGITHIVVVRDNTEKHIVKPQFPGEFVYLEIN--ASDHPLENLIPHFHQSTAFIESALAQGGRVLVHCNGGISRSPAVVVGYLMENRKMD-------FRVAYELVQNKRFCVNPNEGFKTQLKEYE 150          
BLAST of mRNA_L-elsbetiae_contig8417.17429.1 vs. uniprot
Match: MPL1_DICDI (MAP kinase phosphatase with leucine-rich repeats protein 1 n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=MPL1_DICDI)

HSP 1 Score: 67.0 bits (162), Expect = 2.520e-10
Identity = 46/130 (35.38%), Postives = 62/130 (47.69%), Query Frame = 1
Query:    4 AKDKESLKSHGITHILTVNGKEPAFNGDFEYKVINFGG-DNGPLTPHLDESLTFVENGAEDGGVLIHCTHGTGRSAAMAIAAAMRASGKGTPAGIGGFPEAFRLVKSRRPGTDPPMPFQQELGEWEKSRS 390
            A +K  LK + +THILTV   +P +   F+Y +IN    D   +  +  E  TF++ G E GGVLIHC  G  RSA   IA  M  +          F EAF +    R    P   F  +L ++EK  S
Sbjct:  711 AMNKSWLKDNNVTHILTVANFKPLYPDLFKYLIINIDDVDEANIYQYFKEMNTFIDEGREKGGVLIHCRAGVSRSATATIAYIMMKNSVK-------FQEAFDITIKGRSRIYPNRGFLNQLKKFEKDLS 833          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8417.17429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LID8_ECTSI1.130e-6978.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRY3_9PHAE4.880e-4478.65Tyrosine-protein phosphatase domain-containing pro... [more]
A0A835Z9I7_9STRA7.110e-2641.78Protein-tyrosine phosphatase-like protein n=1 Tax=... [more]
A0A835ZF71_9STRA6.720e-1546.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0A0KCI3_CUCSA1.140e-1336.72Uncharacterized protein n=1 Tax=Cucumis sativus Ta... [more]
A0A8J4V4W3_9MYCE6.810e-1336.00Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
R7TE97_CAPTE1.010e-1036.59Uncharacterized protein n=1 Tax=Capitella teleta T... [more]
A0A8C6SBY5_9GOBI1.110e-1031.25Uncharacterized protein n=1 Tax=Neogobius melanost... [more]
A0A139A950_GONPJ1.740e-1033.82Protein-serine/threonine phosphatase (Fragment) n=... [more]
MPL1_DICDI2.520e-1035.38MAP kinase phosphatase with leucine-rich repeats p... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8417contigL-elsbetiae_contig8417:2518..3753 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.1
Seed ortholog evalue1e-53
Seed eggNOG ortholog2880.D8LID8
KEGG koko:K14165
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphatase
EggNOG OGsCOG2453@1,KOG1716@2759
EC3.1.3.16,3.1.3.48
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Ec32 ortholog descriptionProtein-tyrosine phosphatase-like
Ec32 orthologEc-18_004040.1
Exons2
Model size396
Cds size396
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816924.149877-CDS-L-elsbetiae_contig8417:2517..28151622816924.149877-CDS-L-elsbetiae_contig8417:2517..2815Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8417 2518..2815 -
1691683916.0578032-CDS-L-elsbetiae_contig8417:2517..28151691683916.0578032-CDS-L-elsbetiae_contig8417:2517..2815Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8417 2518..2815 -
1622816924.1607645-CDS-L-elsbetiae_contig8417:3655..37531622816924.1607645-CDS-L-elsbetiae_contig8417:3655..3753Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8417 3656..3753 -
1691683916.0682576-CDS-L-elsbetiae_contig8417:3655..37531691683916.0682576-CDS-L-elsbetiae_contig8417:3655..3753Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8417 3656..3753 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8417.17429.1prot_L-elsbetiae_contig8417.17429.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8417 2518..3753 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8417.17429.1

>prot_L-elsbetiae_contig8417.17429.1 ID=prot_L-elsbetiae_contig8417.17429.1|Name=mRNA_L-elsbetiae_contig8417.17429.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=132bp
AAKDKESLKSHGITHILTVNGKEPAFNGDFEYKVINFGGDNGPLTPHLDE
SLTFVENGAEDGGVLIHCTHGTGRSAAMAIAAAMRASGKGTPAGIGGFPE
AFRLVKSRRPGTDPPMPFQQELGEWEKSRST*
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mRNA from alignment at L-elsbetiae_contig8417:2518..3753-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8417.17429.1 ID=mRNA_L-elsbetiae_contig8417.17429.1|Name=mRNA_L-elsbetiae_contig8417.17429.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1236bp|location=Sequence derived from alignment at L-elsbetiae_contig8417:2518..3753- (Laminarionema elsbetiae ELsaHSoW15)
GCCGCGAAGGACAAGGAAAGCCTGAAGTCCCACGGCATTACCCACATCCT CACCGTGAACGGCAAAGAACCTGCGTTCAACGGCGACTTCGAGTACAAGT GAGGCAGGCAAACACCTCCGCGTGGAATGGAACGCAAGGGACTGACTGCC CTGAAATGACGCGATTTCCCTCTTTTTTGTTTTCTTCTTTTTTTCACATT GGTGTTTCCAGCGCTCGATGGGTTCCTTGCCACGAAGGCATTATGCCAGA GTACTGAACCGTGGTCACACAAAAGAGACGAATATCTTCCCTGAATATAT ACCGTCTCTGTCTGCACCTGTTGGTTGCACTACAACTCTCGGCGTATGTC CTACACCCCTCGGTGCATTTTTAAGTAATGCATATAAATGTCAGCAGCCT TCGTCCAGTCTGTGAAAAAGTCGTTCCAGAGGGAACTGTTGTAGGCATAC TAACCCCCTTCTTTCAGTGTAATTACTACTACATAGTCCAGACGTATCAG CCGGGATCATACAGCAGGAGGACCTTTTTTGTTCTTCATTGCTGTTTTTG GCCCCACGTTCGTCCTGCGGTGCTTGCTTACCTTTATTTTGTATTGCGAG AAGGGTCGCCGTGATGAATTCTTATTTCAAAGGGCGAGTACGTACCATAG GCGATAAAATCGCTCCCACCGTAAGGTGCGGTAGGAAAACCCATTGCCGT GACCAGAACTTCCACCTCACTGTCAGCAAATCAATCACCATCACTATTTA CTATGAAGTGCCTTTGCTGCCCCCCCCCCCCCCCCCCCCCGCCCCCCCAA TCCATAGCCGCAACACGGCGCCCCCCCCCCCCCCCTCCACCGCCGCCCGC NNNNNNNNNNCCCCCCACTGTCAGAAAAACAATCCCCATCCCTTTTTACT ATAAAGGGCCTTTTCCGCCCCCCCCCCCCCCGCCCCAGGGTCATCAATTT CGGAGGCGACAACGGGCCCCTCACTCCCCATTTGGACGAGAGCCTGACGT TCGTCGAGAACGGCGCGGAGGATGGTGGTGTGCTGATCCATTGCACACAC GGCACCGGCAGAAGCGCCGCAATGGCGATCGCGGCGGCCATGAGGGCGAG CGGCAAGGGCACCCCCGCAGGAATCGGCGGTTTCCCCGAGGCGTTTAGGT TGGTGAAGTCCCGCCGCCCGGGAACGGACCCCCCGATGCCCTTCCAGCAG GAGCTGGGCGAATGGGAGAAGTCCCGCTCTACTTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8417:2518..3753-

>mRNA_L-elsbetiae_contig8417.17429.1 ID=mRNA_L-elsbetiae_contig8417.17429.1|Name=mRNA_L-elsbetiae_contig8417.17429.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=792bp|location=Sequence derived from alignment at L-elsbetiae_contig8417:2518..3753- (Laminarionema elsbetiae ELsaHSoW15)
GCCGCGAAGGACAAGGAAAGCCTGAAGTCCCACGGCATTACCCACATCCT
CACCGTGAACGGCAAAGAACCTGCGTTCAACGGCGACTTCGAGTACAAGC
CGCGAAGGACAAGGAAAGCCTGAAGTCCCACGGCATTACCCACATCCTCA
CCGTGAACGGCAAAGAACCTGCGTTCAACGGCGACTTCGAGTACAAGGTC
ATCAATTTCGGAGGCGACAACGGGCCCCTCACTCCCCATTTGGACGAGAG
CCTGACGTTCGTCGAGAACGGCGCGGAGGATGGTGGTGTGCTGATCCATT
GCACACACGGCACCGGCAGAAGCGCCGCAATGGCGATCGCGGCGGCCATG
AGGGCGAGCGGCAAGGGCACCCCCGCAGGAATCGGCGGTTTCCCCGAGGC
GTTTAGGTTGGTGAAGTCCCGCCGCCCGGGAACGGACCCCCCGATGCCCT
TCCAGCAGGAGCTGGGCGAATGGGAGAAGTCCCGCTCTACTTAGGGTCAT
CAATTTCGGAGGCGACAACGGGCCCCTCACTCCCCATTTGGACGAGAGCC
TGACGTTCGTCGAGAACGGCGCGGAGGATGGTGGTGTGCTGATCCATTGC
ACACACGGCACCGGCAGAAGCGCCGCAATGGCGATCGCGGCGGCCATGAG
GGCGAGCGGCAAGGGCACCCCCGCAGGAATCGGCGGTTTCCCCGAGGCGT
TTAGGTTGGTGAAGTCCCGCCGCCCGGGAACGGACCCCCCGATGCCCTTC
CAGCAGGAGCTGGGCGAATGGGAGAAGTCCCGCTCTACTTAG
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