mRNA_L-elsbetiae_contig8409.17424.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8409.17424.1
Unique NamemRNA_L-elsbetiae_contig8409.17424.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8409.17424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8409contigL-elsbetiae_contig8409:5539..6541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size359
Cds size357
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8409.17424.1prot_L-elsbetiae_contig8409.17424.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8409 5539..6541 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816923.7154207-CDS-L-elsbetiae_contig8409:5538..56701622816923.7154207-CDS-L-elsbetiae_contig8409:5538..5670Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8409 5539..5670 -
1691683915.7236545-CDS-L-elsbetiae_contig8409:5538..56701691683915.7236545-CDS-L-elsbetiae_contig8409:5538..5670Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8409 5539..5670 -
1622816923.725489-CDS-L-elsbetiae_contig8409:6136..62661622816923.725489-CDS-L-elsbetiae_contig8409:6136..6266Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8409 6137..6266 -
1691683915.7345955-CDS-L-elsbetiae_contig8409:6136..62661691683915.7345955-CDS-L-elsbetiae_contig8409:6136..6266Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8409 6137..6266 -
1622816923.7370265-CDS-L-elsbetiae_contig8409:6446..65411622816923.7370265-CDS-L-elsbetiae_contig8409:6446..6541Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8409 6447..6541 -
1691683915.745709-CDS-L-elsbetiae_contig8409:6446..65411691683915.745709-CDS-L-elsbetiae_contig8409:6446..6541Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8409 6447..6541 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8409.17424.1

>prot_L-elsbetiae_contig8409.17424.1 ID=prot_L-elsbetiae_contig8409.17424.1|Name=mRNA_L-elsbetiae_contig8409.17424.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp
MQWLREISHADAGYSELQELSWLYGAHLLFESRTEAIAFNTAATTLIKVL
QGRAAVTTTTKPVVSEDVSAGDKNKCQEGEDLPDGSKSRKRKHKKKERTS
PVEIASRCDETIKPTTSDP
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mRNA from alignment at L-elsbetiae_contig8409:5539..6541-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8409.17424.1 ID=mRNA_L-elsbetiae_contig8409.17424.1|Name=mRNA_L-elsbetiae_contig8409.17424.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1003bp|location=Sequence derived from alignment at L-elsbetiae_contig8409:5539..6541- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGTGGTTACGAGAAATCTCCCACGCGGACGCTGGGTACTCCGAGCT
GCAAGAATTATCTTGGCTGTATGGTGCCCACCTGTTATTTGAAAGGTATT
TTTCTGTTTGTGGGTACTGGGTTTCGGGCCCTGTGTGCCGCAAAAAGGAG
CCAACCCCTCTCTGACGGTATGTTCTAGACCTCGCCATTAAATTCCAACG
ATTGATTGCATGCCCGCTCCAAAATTCGTCAAAGTCGCGGCAGAAACTCG
TTTCATCTTCACTTTGCCTCCGCAGCCGAACGGAAGCCATAGCGTTCAAC
ACGGCGGCAACCACGCTGATCAAAGTGTTGCAAGGTCGGGCTGCCGTCAC
CACCACCACCAAGCCCGTCGTCAGCGAAGACGTCTCTGCGGGAGACAAGA
ACAAGGTGACTGAGCAGGCTATAACTCTCCGCACAGTCATGGAAACTCAG
ACGCTGCCACGATTGATAACCCTTTTCTGTACCTTAACGCGCGCCCTCTG
CAATCAAACTCCAGCAGGACGGGGAAGACGGGTATCTCTACAAACTTGAC
GTATGAACTCTGCCCAATGCCATACGCTCCAAACCTGGCTCGACAAGCCA
ACAAAGTGGTGCTCCGTGTTTCTAGGTAGTTGGAGCGCTTGCTGAAGGTT
CACGTCATGGTTTGGCTCACCTAGCTTCAGTCCAAGCACATTTTTCCTTG
GTTACCCCAAGTCACGGGGAAACCTTGTTCGCCTAGCCTCAATTCAGTTA
TCTCCTCCATTTTTCCTGATAACAATTTAAATTGATTTACCTTTTATTAT
ACTAGCCTCGGGTAAAGTCACGTGCCCCAAATATAAATTAAATCACTTCA
TTTTGATGTGCGATGACTCAGTGCCAGGAGGGAGAGGATTTGCCAGATGG
TTCGAAATCCAGAAAGAGAAAGCATAAGAAGAAGGAAAGGACAAGCCCCG
TTGAGATCGCGAGTCGTTGCGACGAGACGATCAAGCCCACCACCTCTGAC
CCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8409:5539..6541-

>mRNA_L-elsbetiae_contig8409.17424.1 ID=mRNA_L-elsbetiae_contig8409.17424.1|Name=mRNA_L-elsbetiae_contig8409.17424.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig8409:5539..6541- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGTGGTTACGAGAAATCTCCCACGCGGACGCTGGGTACTCCGAGCT
GCAAGAATTATCTTGGCTGTATGGTGCCCACCTGTTATTTGAAAGATGCA
GTGGTTACGAGAAATCTCCCACGCGGACGCTGGGTACTCCGAGCTGCAAG
AATTATCTTGGCTGTATGGTGCCCACCTGTTATTTGAAAGCCGAACGGAA
GCCATAGCGTTCAACACGGCGGCAACCACGCTGATCAAAGTGTTGCAAGG
TCGGGCTGCCGTCACCACCACCACCAAGCCCGTCGTCAGCGAAGACGTCT
CTGCGGGAGACAAGAACAAGCCGAACGGAAGCCATAGCGTTCAACACGGC
GGCAACCACGCTGATCAAAGTGTTGCAAGGTCGGGCTGCCGTCACCACCA
CCACCAAGCCCGTCGTCAGCGAAGACGTCTCTGCGGGAGACAAGAACAAG
TGCCAGGAGGGAGAGGATTTGCCAGATGGTTCGAAATCCAGAAAGAGAAA
GCATAAGAAGAAGGAAAGGACAAGCCCCGTTGAGATCGCGAGTCGTTGCG
ACGAGACGATCAAGCCCACCACCTCTGACCCGTGCCAGGAGGGAGAGGAT
TTGCCAGATGGTTCGAAATCCAGAAAGAGAAAGCATAAGAAGAAGGAAAG
GACAAGCCCCGTTGAGATCGCGAGTCGTTGCGACGAGACGATCAAGCCCA
CCACCTCTGACCCG
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