mRNA_L-elsbetiae_contig8407.17423.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8407.17423.1
Unique NamemRNA_L-elsbetiae_contig8407.17423.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8407.17423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8407contigL-elsbetiae_contig8407:6814..8257 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size280
Cds size279
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816923.6696072-CDS-L-elsbetiae_contig8407:6813..69961622816923.6696072-CDS-L-elsbetiae_contig8407:6813..6996Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8407 6814..6996 -
1691683915.6940553-CDS-L-elsbetiae_contig8407:6813..69961691683915.6940553-CDS-L-elsbetiae_contig8407:6813..6996Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8407 6814..6996 -
1622816923.6821034-CDS-L-elsbetiae_contig8407:8161..82571622816923.6821034-CDS-L-elsbetiae_contig8407:8161..8257Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8407 8162..8257 -
1691683915.7109084-CDS-L-elsbetiae_contig8407:8161..82571691683915.7109084-CDS-L-elsbetiae_contig8407:8161..8257Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8407 8162..8257 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8407.17423.1prot_L-elsbetiae_contig8407.17423.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8407 6814..8257 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8407.17423.1

>prot_L-elsbetiae_contig8407.17423.1 ID=prot_L-elsbetiae_contig8407.17423.1|Name=mRNA_L-elsbetiae_contig8407.17423.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=93bp
MFALRVRSCCSPRRGSMDARRWDACAHVPGALLVFVGSAHGEEPIQMPLE
EVKVMIDAFLETDGARRGEMAAREQGGGAISRDGDVSTRRLGS
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mRNA from alignment at L-elsbetiae_contig8407:6814..8257-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8407.17423.1 ID=mRNA_L-elsbetiae_contig8407.17423.1|Name=mRNA_L-elsbetiae_contig8407.17423.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1444bp|location=Sequence derived from alignment at L-elsbetiae_contig8407:6814..8257- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTGCTCTCCGGGTGCGATCATGCTGTTCACCCAGAAGGGGTTCGAT
GGATGCTCGCCGCTGGGATGCATGCGCCCATGTGCCAGGCGCATTGGTTA
GAGTGTACGTAGACAAGGTATTAGGCCTTGGTAATAAGAATCACAGATCT
TGCAGATCTAGGCTACCACCGTACAGTAGTGACACAAGATACCACACCCC
CTGGATCGATTGTTTGAGCTTCATTACTCCGTAACAAAAAGGGCAGATAC
CAGCACTAGACGACACATCTTCGGACAGCCCTCGACAAATATTTCCAACG
CCACCCCCTTCCGGCACCTGGCACTCTTCTTGCTGGGGAGTAATCGAGCT
TTGAAAATATGTCCAGGAGGTGTGGTATCTTGTCGCCGACGGCATGTATC
TACAAGAGCTCCGGACGCGGGGGGCTACCGGCCCCCCCGTCCTTCGGTTT
CTGATAGTTAATACATAGGGAGGGTTCGATTAGTCTATGTGTTGTTACCC
AGACTACCAAGGGTACCATTGGTGAGAGGAACAGGAACTGAGCGTGTTGT
AATATTAGTACAGACGACTTTCTTTGTGGCAATTGAGGCGAAAAATCGTC
GCGTAATTCCCTGTCAGGGGATAGCGCTTATTATGTAGCGTGTGTACACA
AACTTCGACCTCACCGTCGACGAGGGAAAGGGACGGCGGAACCCTTCTCG
CGACAGAAATCTTAGGCAAGCACTGCAGACGGGGGGAGTGGGGGCCTTGG
GGAAAGGAACCCTTCTGTGTGACCACGGTTCAGTACTCTGGCAAGATGTC
CTCGTGTGAGCTGTGACCAGGGTTCAGTACTCTGGCAAGATGTCCTCGTG
AGGGCGGGTCTCAAGGTTAGAAATGTCAGCCAATTTGGAAAGCGAAATCG
AATTGGGGGCTCGAATCTGGACAATCAGCGCCCCCGCGCAAGGAGCGGAA
TCGATTACCTACTAGGTGTTACGGGTTGTATAGATGATGCTTAGATATCT
AGCTAGCACCTGTACGGAAACTGCTGGGGCTTTGTGGAGGACCCAAGCAC
GCTAGCACTTTTATGCTTCAAGAACTGCTGCCAACAGAATGCTTGACGAA
CATGAGCAGCTCGAGCACAACGCCGGGGACCAGAGCACACCCGTTCTTGT
TGCGCGTTTGCCTGGACAACAGTACGGTGTAGCTGCGCCTGTTCCTTGCC
CCCCTTCTTACCCTGACGTCCGGCGCACACTCCTCTCTATACGGCGCGGA
AAATGGTGAAGCTTGTCTTCGTTGGTTCTGCACACGGCGAGGAGCCGATA
CAAATGCCGCTGGAAGAGGTCAAGGTGATGATCGACGCGTTCCTGGAAAC
GGATGGGGCACGGCGAGGGGAGATGGCCGCGAGGGAGCAAGGAGGAGGAG
CCATATCGCGTGACGGCGATGTCTCTACGCGGAGGCTTGGATCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8407:6814..8257-

>mRNA_L-elsbetiae_contig8407.17423.1 ID=mRNA_L-elsbetiae_contig8407.17423.1|Name=mRNA_L-elsbetiae_contig8407.17423.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=558bp|location=Sequence derived from alignment at L-elsbetiae_contig8407:6814..8257- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTGCTCTCCGGGTGCGATCATGCTGTTCACCCAGAAGGGGTTCGAT
GGATGCTCGCCGCTGGGATGCATGCGCCCATGTGCCAGGCGCATTGATGT
TTGCTCTCCGGGTGCGATCATGCTGTTCACCCAGAAGGGGTTCGATGGAT
GCTCGCCGCTGGGATGCATGCGCCCATGTGCCAGGCGCATTGCTTGTCTT
CGTTGGTTCTGCACACGGCGAGGAGCCGATACAAATGCCGCTGGAAGAGG
TCAAGGTGATGATCGACGCGTTCCTGGAAACGGATGGGGCACGGCGAGGG
GAGATGGCCGCGAGGGAGCAAGGAGGAGGAGCCATATCGCGTGACGGCGA
TGTCTCTACGCGGAGGCTTGGATCGCTTGTCTTCGTTGGTTCTGCACACG
GCGAGGAGCCGATACAAATGCCGCTGGAAGAGGTCAAGGTGATGATCGAC
GCGTTCCTGGAAACGGATGGGGCACGGCGAGGGGAGATGGCCGCGAGGGA
GCAAGGAGGAGGAGCCATATCGCGTGACGGCGATGTCTCTACGCGGAGGC
TTGGATCG
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