mRNA_L-elsbetiae_contig8407.17422.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8407.17422.1
Unique NamemRNA_L-elsbetiae_contig8407.17422.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8407.17422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8407contigL-elsbetiae_contig8407:5817..6783 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size574
Cds size570
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816923.6166732-CDS-L-elsbetiae_contig8407:5818..62051622816923.6166732-CDS-L-elsbetiae_contig8407:5818..6205Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8407 5819..6205 -
1691683915.6688175-CDS-L-elsbetiae_contig8407:5818..62051691683915.6688175-CDS-L-elsbetiae_contig8407:5818..6205Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8407 5819..6205 -
1622816923.6283727-CDS-L-elsbetiae_contig8407:6600..67831622816923.6283727-CDS-L-elsbetiae_contig8407:6600..6783Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8407 6601..6783 -
1691683915.6847594-CDS-L-elsbetiae_contig8407:6600..67831691683915.6847594-CDS-L-elsbetiae_contig8407:6600..6783Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8407 6601..6783 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8407.17422.1prot_L-elsbetiae_contig8407.17422.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8407 5819..6783 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8407.17422.1

>prot_L-elsbetiae_contig8407.17422.1 ID=prot_L-elsbetiae_contig8407.17422.1|Name=mRNA_L-elsbetiae_contig8407.17422.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=190bp
SPKKSPQARRQENTTNVKANNAHRARAGASHNAAKADTRTKARARGAAAR
SRGDLALAGQQRMVELVAVSSEPGQEPIQMPLEEVKVMVDALLETNGAQG
GEMFAGIMTAHGEEPITLEEVKVMIDTFLETDGAQRGEMAAGEQGGGAMS
RDGDSPTQRLGLATPKAEREEESPKQPPQARRQENTTENR
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mRNA from alignment at L-elsbetiae_contig8407:5817..6783-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8407.17422.1 ID=mRNA_L-elsbetiae_contig8407.17422.1|Name=mRNA_L-elsbetiae_contig8407.17422.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=967bp|location=Sequence derived from alignment at L-elsbetiae_contig8407:5817..6783- (Laminarionema elsbetiae ELsaHSoW15)
TCTCCAAAAAAGTCGCCCCAGGCGAGGAGGCAGGAAAATACAACCAACGT
CAAGGCCAATAATGCCCACAGGGCGAGGGCCGGAGCCTCGCATAACGCAG
CCAAGGCCGATACCCGGACGAAGGCCAGGGCTAGAGGCGCCGCCGCCAGG
TCGAGGGGAGACCTTGCTTTGGCAGGGCAGCAGGTATATAGAGTGGTGGT
TCAGGGTGGTAGGAGTTCATCCCGCAGAACTCGTTTTTTTTGTGCATGTC
ACGATGATCAAATGCTCAGCAGTAGTGTAGGCTAACTTTTTAGGTGTTGC
GGGTTGTATAGATGATGCTTCAGATATCTAGCTAGCACCTGTACGGAAAC
TGCTGGGGCTGTGTGGAGGACCCAAGCACGCTAGCACTTTTATGCTTCAA
GAACTGCTGCCAACAGAATGCTTGACGAACAAGAGCACCTCGAGCACAAC
GCCGGGGACCAGAGCACACCCGTTCTTATTGCGCGTTTGCCTGGACAACA
GTACGGTGTAGCTGCGCCTGTTCCTTGCCCCCCTTCTTATCCTGACGTCC
GGCGCACACTCCTCTCTATACGACGCAGAGAATGGTGGAGCTTGTCGCCG
TTAGTTCTGAACCAGGCCAGGAGCCGATACAAATGCCGCTGGAAGAGGTC
AAGGTGATGGTCGACGCGTTGCTGGAAACGAATGGAGCACAGGGAGGGGA
GATGTTCGCCGGGATTATGACTGCACACGGCGAGGAGCCGATTACGCTGG
AAGAGGTCAAGGTGATGATCGACACGTTCCTGGAAACGGATGGGGCACAG
CGAGGGGAGATGGCCGCGGGGGAGCAAGGAGGAGGAGCCATGTCGCGTGA
TGGCGATTCCCCTACGCAGAGGCTGGGATTGGCGACGCCTAAGGCGGAGA
GAGAGGAGGAGTCTCCAAAACAGCCGCCTCAGGCGAGGAGGCAGGAAAAT
ACGACCGAAAACAGAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8407:5817..6783-

>mRNA_L-elsbetiae_contig8407.17422.1 ID=mRNA_L-elsbetiae_contig8407.17422.1|Name=mRNA_L-elsbetiae_contig8407.17422.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1140bp|location=Sequence derived from alignment at L-elsbetiae_contig8407:5817..6783- (Laminarionema elsbetiae ELsaHSoW15)
TCTCCAAAAAAGTCGCCCCAGGCGAGGAGGCAGGAAAATACAACCAACGT
CAAGGCCAATAATGCCCACAGGGCGAGGGCCGGAGCCTCGCATAACGCAG
CCAAGGCCGATACCCGGACGAAGGCCAGGGCTAGAGGCGCCGCCGCCAGG
TCGAGGGGAGACCTTGCTTTGGCAGGGCAGCAGTCTCCAAAAAAGTCGCC
CCAGGCGAGGAGGCAGGAAAATACAACCAACGTCAAGGCCAATAATGCCC
ACAGGGCGAGGGCCGGAGCCTCGCATAACGCAGCCAAGGCCGATACCCGG
ACGAAGGCCAGGGCTAGAGGCGCCGCCGCCAGGTCGAGGGGAGACCTTGC
TTTGGCAGGGCAGCAGAGAATGGTGGAGCTTGTCGCCGTTAGTTCTGAAC
CAGGCCAGGAGCCGATACAAATGCCGCTGGAAGAGGTCAAGGTGATGGTC
GACGCGTTGCTGGAAACGAATGGAGCACAGGGAGGGGAGATGTTCGCCGG
GATTATGACTGCACACGGCGAGGAGCCGATTACGCTGGAAGAGGTCAAGG
TGATGATCGACACGTTCCTGGAAACGGATGGGGCACAGCGAGGGGAGATG
GCCGCGGGGGAGCAAGGAGGAGGAGCCATGTCGCGTGATGGCGATTCCCC
TACGCAGAGGCTGGGATTGGCGACGCCTAAGGCGGAGAGAGAGGAGGAGT
CTCCAAAACAGCCGCCTCAGGCGAGGAGGCAGGAAAATACGACCGAAAAC
AGAAGAATGGTGGAGCTTGTCGCCGTTAGTTCTGAACCAGGCCAGGAGCC
GATACAAATGCCGCTGGAAGAGGTCAAGGTGATGGTCGACGCGTTGCTGG
AAACGAATGGAGCACAGGGAGGGGAGATGTTCGCCGGGATTATGACTGCA
CACGGCGAGGAGCCGATTACGCTGGAAGAGGTCAAGGTGATGATCGACAC
GTTCCTGGAAACGGATGGGGCACAGCGAGGGGAGATGGCCGCGGGGGAGC
AAGGAGGAGGAGCCATGTCGCGTGATGGCGATTCCCCTACGCAGAGGCTG
GGATTGGCGACGCCTAAGGCGGAGAGAGAGGAGGAGTCTCCAAAACAGCC
GCCTCAGGCGAGGAGGCAGGAAAATACGACCGAAAACAGA
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