mRNA_L-elsbetiae_contig8407.17421.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8407.17421.1
Unique NamemRNA_L-elsbetiae_contig8407.17421.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8407.17421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8407contigL-elsbetiae_contig8407:3913..5230 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size505
Cds size381
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8407.17421.1prot_L-elsbetiae_contig8407.17421.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8407 4036..5230 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816923.555126-UTR-L-elsbetiae_contig8407:3912..40351622816923.555126-UTR-L-elsbetiae_contig8407:3912..4035Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8407 3913..4035 -
1691683915.6284122-UTR-L-elsbetiae_contig8407:3912..40351691683915.6284122-UTR-L-elsbetiae_contig8407:3912..4035Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8407 3913..4035 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816923.569655-CDS-L-elsbetiae_contig8407:4035..43631622816923.569655-CDS-L-elsbetiae_contig8407:4035..4363Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8407 4036..4363 -
1691683915.6390457-CDS-L-elsbetiae_contig8407:4035..43631691683915.6390457-CDS-L-elsbetiae_contig8407:4035..4363Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8407 4036..4363 -
1622816923.585217-CDS-L-elsbetiae_contig8407:5177..52301622816923.585217-CDS-L-elsbetiae_contig8407:5177..5230Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8407 5178..5230 -
1691683915.6487927-CDS-L-elsbetiae_contig8407:5177..52301691683915.6487927-CDS-L-elsbetiae_contig8407:5177..5230Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8407 5178..5230 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8407.17421.1

>prot_L-elsbetiae_contig8407.17421.1 ID=prot_L-elsbetiae_contig8407.17421.1|Name=mRNA_L-elsbetiae_contig8407.17421.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp
RSRSFWFAPFSSFSCLSGLVPTCEQSLSPFAAITRHSWIASRQTLRYKST
EYELGLKCPVPGFVRIYLVNKQHRGGRYFVGRALAVGVGRVERGTRRNRG
CSLRRRSRPSSRPRRNVYDAAFGWRG*
back to top

mRNA from alignment at L-elsbetiae_contig8407:3913..5230-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8407.17421.1 ID=mRNA_L-elsbetiae_contig8407.17421.1|Name=mRNA_L-elsbetiae_contig8407.17421.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1318bp|location=Sequence derived from alignment at L-elsbetiae_contig8407:3913..5230- (Laminarionema elsbetiae ELsaHSoW15)
CGCAGTCGCAGCTTTTGGTTTGCTCCGTTCTCGTCATTCTCATGTTTATC
CGGGTGAGCGCAGCGTATGTTCCAGAGGCTTGATAGACACGCGGTAAATC
TCGAAAGAAGTTCGTGCATGAGTGAGGTAAATCTCGAAAGAAGTGCGTGC
GTGAGTGAGGGTAGCTTATTTTCTTGCTGTATAAGTCTAACTAAATATCA
TCCCTTCCCGCATATGGAGGCAAACAGGACTGAGGCGGGGCATGCCCGCT
GAAACAAATGTAGTGACTGCATTCCTTGTTCTCTGACCTGTATGCATATT
GAGGAGGGATGTCTGTTCTTGTGACATGTAAATGAACCCTCTGTGCGTAG
ATTGCTGCTCCACTCCGTTTTTATCACGTGTCATTGAGACAGGTCTCAAA
CGCGCAGTGAATGCGCGACTCCTCGAACGATTGCGTCGTATTGGACCACT
AAAGACCACTGCGACATTTCCTATCGATTAAGGCATATATACATATGTAT
GACTATCCATCCGTGCAAGCGCACCACATAATGTTTTAATGGTTTTCAGG
TCAAAAAACGTTTTTAGTTTCTGTACGCTTCCTTTCGGTTTTCCAACAAG
CCGTGCTTGTGCTTTGCGGAGGACGTCCAATCCCAAAGGATGGAGAGGCG
GGTGTGCCGTTGCCTTGAGACAGTATTGGGAAGACCCAAAGCTAGCGTCA
TTCGTCGATTCGTCATATCTCAACACGTATTTTATTTCAGAGAAAAGTGG
AGTAGACTATGTAAAGAAGAAGCGCCCCGTGATGCTGGACTCGGGGGCAA
AAATTGAACGATAAAAACAACTCTCCCGCACCCGTACCTTCGTGGTTCAT
TTTGTTGTGGTGCACAGACTCGTGCCGACATGCGAGCAGAGCTTATCGCC
CTTCGCCGCGATAACCAGGCACTCTTGGATCGCCTCGAGGCAAACTTTGA
GATACAAATCAACGGAGTACGAGCTTGGACTGAAATGCCCGGTGCCAGGA
TTCGTCCGGATATACCTGGTCAATAAACAGCACCGGGGTGGGCGGTATTT
CGTCGGCCGTGCTCTCGCGGTTGGTGTTGGAAGGGTGGAGCGGGGCACCA
GAAGGAACCGCGGCTGCAGCTTGCGGCGTAGGTCACGGCCGTCGAGCCGG
CCTCGGCGGAACGTGTATGATGCGGCATTTGGATGGAGAGGGTAGGGAGA
GAAGGCCTCAGCTGGTTTAGCATCAGGGCGACAACTTCGTCTACCGCCGT
GCCGCGGCCGGCCAGCCGCCCGCCCGCGGCAGCGCAGCAGTCTACGCAGG
GTTTTCGTCTTCAGTAAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig8407:3913..5230-

>mRNA_L-elsbetiae_contig8407.17421.1 ID=mRNA_L-elsbetiae_contig8407.17421.1|Name=mRNA_L-elsbetiae_contig8407.17421.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig8407:3913..5230- (Laminarionema elsbetiae ELsaHSoW15)
CGCAGTCGCAGCTTTTGGTTTGCTCCGTTCTCGTCATTCTCATGTTTATC
CGGCGCAGTCGCAGCTTTTGGTTTGCTCCGTTCTCGTCATTCTCATGTTT
ATCCGGACTCGTGCCGACATGCGAGCAGAGCTTATCGCCCTTCGCCGCGA
TAACCAGGCACTCTTGGATCGCCTCGAGGCAAACTTTGAGATACAAATCA
ACGGAGTACGAGCTTGGACTGAAATGCCCGGTGCCAGGATTCGTCCGGAT
ATACCTGGTCAATAAACAGCACCGGGGTGGGCGGTATTTCGTCGGCCGTG
CTCTCGCGGTTGGTGTTGGAAGGGTGGAGCGGGGCACCAGAAGGAACCGC
GGCTGCAGCTTGCGGCGTAGGTCACGGCCGTCGAGCCGGCCTCGGCGGAA
CGTGTATGATGCGGCATTTGGATGGAGAGGGTAGACTCGTGCCGACATGC
GAGCAGAGCTTATCGCCCTTCGCCGCGATAACCAGGCACTCTTGGATCGC
CTCGAGGCAAACTTTGAGATACAAATCAACGGAGTACGAGCTTGGACTGA
AATGCCCGGTGCCAGGATTCGTCCGGATATACCTGGTCAATAAACAGCAC
CGGGGTGGGCGGTATTTCGTCGGCCGTGCTCTCGCGGTTGGTGTTGGAAG
GGTGGAGCGGGGCACCAGAAGGAACCGCGGCTGCAGCTTGCGGCGTAGGT
CACGGCCGTCGAGCCGGCCTCGGCGGAACGTGTATGATGCGGCATTTGGA
TGGAGAGGGTAG
back to top