mRNA_L-elsbetiae_contig8407.17420.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8407.17420.1
Unique NamemRNA_L-elsbetiae_contig8407.17420.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8407.17420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8407contigL-elsbetiae_contig8407:893..2337 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size381
Cds size381
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8407.17420.1prot_L-elsbetiae_contig8407.17420.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8407 893..2337 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816923.5008235-CDS-L-elsbetiae_contig8407:892..9641622816923.5008235-CDS-L-elsbetiae_contig8407:892..964Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8407 893..964 -
1691683915.5923986-CDS-L-elsbetiae_contig8407:892..9641691683915.5923986-CDS-L-elsbetiae_contig8407:892..964Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8407 893..964 -
1622816923.512031-CDS-L-elsbetiae_contig8407:1546..17701622816923.512031-CDS-L-elsbetiae_contig8407:1546..1770Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8407 1547..1770 -
1691683915.60752-CDS-L-elsbetiae_contig8407:1546..17701691683915.60752-CDS-L-elsbetiae_contig8407:1546..1770Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8407 1547..1770 -
1622816923.522875-CDS-L-elsbetiae_contig8407:2252..23371622816923.522875-CDS-L-elsbetiae_contig8407:2252..2337Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8407 2253..2337 -
1691683915.617685-CDS-L-elsbetiae_contig8407:2252..23371691683915.617685-CDS-L-elsbetiae_contig8407:2252..2337Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8407 2253..2337 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8407.17420.1

>prot_L-elsbetiae_contig8407.17420.1 ID=prot_L-elsbetiae_contig8407.17420.1|Name=mRNA_L-elsbetiae_contig8407.17420.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp
LGRRGGGVGGCEARHGYIGIRRGETGGIGGGWLCRPSVCPWTWASRAGNT
GPGGGTGGDLEQGSPACTPVVVHGHRGGDTGGVRRRADGVGAVAASEKAP
ISRDRSVVRRREPSLVDNGEGLTAAM*
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mRNA from alignment at L-elsbetiae_contig8407:893..2337-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8407.17420.1 ID=mRNA_L-elsbetiae_contig8407.17420.1|Name=mRNA_L-elsbetiae_contig8407.17420.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1445bp|location=Sequence derived from alignment at L-elsbetiae_contig8407:893..2337- (Laminarionema elsbetiae ELsaHSoW15)
CTTGGCAGAAGGGGTGGGGGGGTTGGTGGATGCGAAGCAAGACACGGATA
CATCGGGATACGGCGCGGGGAAACTGGAGGCATAGGTACGGTCAACGAAT
AGATAGAGGTGACGGTCTAGCAAGGGCCGAGGCAGATGAAAGATGGGTGC
ACGCAGAACTTCTTTGTTTGGTGCTTCGGTGCGATATCGTTTGCTGTTGT
CGCTTGAAATGTTAATAGCAGTGGCGGCACTGGCCCCGTTTTCCATCACC
TGTGCTAGGCGTGCTATGTAGGTGCCGTGTCGGTTCATAGGCGTCTCGAC
AGAACCAAGCTTTCGAGCTTTCGAGCGGCCCTGCGAGAATCAGGGATAAC
AAGCACATATCTCTACTGCTGTACCATGTGAAGCATGACATCTCTGGTGG
CCACACGTCCGAGTTGACACAATGGCTGATATACCGTTCTACCGTCCGTC
TCCCACCGCCTTAAACATAGACATACACAATTCCCGCTGCCGTTGCTCCT
TCCTGCCATACCCGCGCCCTCATCCTCGTCTCACCCCCGACCCTCGACCC
TTGGCGCTATTACAAAGGCGGCGGGTGGCTCTGCAGGCCTTCCGTGTGTC
CGTGGACGTGGGCGTCCCGCGCTGGCAACACCGGTCCCGGCGGGGGCACC
GGTGGCGATTTGGAGCAAGGGTCGCCGGCCTGCACGCCTGTGGTCGTTCA
CGGTCACAGAGGAGGGGATACTGGGGGTGTTCGGAGGCGCGCGGATGGAG
TCGGGGCTGTGGCAGCGTCTGAAAAGGCTCCGATTTCCAGGGTGAGGTCT
TGTTTGCTTTCTAGATCAAGTTTGGGGCTATATATCCCTTCGAAACCTTT
CCACCGAAGAGAAGGGCGGGGCCTGTTCGAAAGCAAGTCTGTTTGGTTAT
TTTGTGCTTCTTCCATAGTCTGCGGCCAACCTTCGCTTGGAAGGCAAAGC
GCACAGTCGATTGGCTGACGGGGTCGTGGTTCGTTGCGGATATTGTGGCT
GCTGTTACTCGAGCACTTCGTATGACAGGTAAATGCCATGCTGTTTGTGT
ATCATATTTTGTCGAATATTTTGCCTGGATTTGGCTGGGCGGGCCAAGCA
CACCTTTTCTCAAGGACGGGGGTAAGCCCGAAGGTGCGCCCCCTCCTATC
CGCCGTTTCCCTACCCAGCATCACACGCATGCACAGTATTTCCATTTTTT
GTTTGCGTGCTAGGCTTTCCACTCGCGTCATCACATGCATGCCGACCGGC
GGCGTTCTCAGTCATGATGCTGCGTACACGTGCGCATGAGTGTCTTTTTT
CCAACCCCCGCAGCACCGGCCATACCCGCCTCCGCCGGCCGCACCGTTCC
GTGCCCCCCGTCTACCAAAACAGGACAGGAGCGTGGTCCGCCGACGCGAA
CCTAGCCTGGTAGATAACGGAGAGGGCTTGACGGCTGCGATGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8407:893..2337-

>mRNA_L-elsbetiae_contig8407.17420.1 ID=mRNA_L-elsbetiae_contig8407.17420.1|Name=mRNA_L-elsbetiae_contig8407.17420.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig8407:893..2337- (Laminarionema elsbetiae ELsaHSoW15)
CTTGGCAGAAGGGGTGGGGGGGTTGGTGGATGCGAAGCAAGACACGGATA
CATCGGGATACGGCGCGGGGAAACTGGAGGCATAGCTTGGCAGAAGGGGT
GGGGGGGTTGGTGGATGCGAAGCAAGACACGGATACATCGGGATACGGCG
CGGGGAAACTGGAGGCATAGGCGGCGGGTGGCTCTGCAGGCCTTCCGTGT
GTCCGTGGACGTGGGCGTCCCGCGCTGGCAACACCGGTCCCGGCGGGGGC
ACCGGTGGCGATTTGGAGCAAGGGTCGCCGGCCTGCACGCCTGTGGTCGT
TCACGGTCACAGAGGAGGGGATACTGGGGGTGTTCGGAGGCGCGCGGATG
GAGTCGGGGCTGTGGCAGCGTCTGAAAAGGCTCCGATTTCCAGGGCGGCG
GGTGGCTCTGCAGGCCTTCCGTGTGTCCGTGGACGTGGGCGTCCCGCGCT
GGCAACACCGGTCCCGGCGGGGGCACCGGTGGCGATTTGGAGCAAGGGTC
GCCGGCCTGCACGCCTGTGGTCGTTCACGGTCACAGAGGAGGGGATACTG
GGGGTGTTCGGAGGCGCGCGGATGGAGTCGGGGCTGTGGCAGCGTCTGAA
AAGGCTCCGATTTCCAGGGACAGGAGCGTGGTCCGCCGACGCGAACCTAG
CCTGGTAGATAACGGAGAGGGCTTGACGGCTGCGATGTGAGACAGGAGCG
TGGTCCGCCGACGCGAACCTAGCCTGGTAGATAACGGAGAGGGCTTGACG
GCTGCGATGTGA
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