mRNA_L-elsbetiae_contig84.17402.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig84.17402.1
Unique NamemRNA_L-elsbetiae_contig84.17402.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig84.17402.1 vs. uniprot
Match: A0A6H5KQH0_9PHAE (Pep3_Vps18 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH0_9PHAE)

HSP 1 Score: 362 bits (928), Expect = 8.100e-111
Identity = 269/453 (59.38%), Postives = 288/453 (63.58%), Query Frame = 3 
Query:   51 MNLFEDWDATEKRTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSRD-GHEPSKKREAQGGRGLLSSVWGQGPSPPRQAPQPAAPVRSSATAAGSGSSSTMNPFSGAA-------GGAS--LNPFTPSSSSSNPFIG------GGSSNPFGSGMAGADGTSNQXXXXXXXXXXXXXXXXXXXXXGDPPIFSLRRLDFRTAASASSSSGSWAILAVAVGNGTLAMATSDCCVIRWNTGRD-GRPEEVEISKRQEDTIHKMFLDPTGNHLLVCLHGGETYYLHSGTARPKRLLKWTGVVVEAVAFDAKRCTEGSTKGIVIGTRSGDLYESSLESNGKERPFSLVYSLSRRQPRAGDGAGXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXGVVAALYLESMSSAVHGETRVFVMAVTASPLRLYVFMGGPTLEV 1358
            MNLFEDWDATEKRTQ           XXXXXXXXXXXXXXXXXX             TSRD G  P + R   GGR L SS WGQG                            M+PF G         GG S  LNPF P SS             G +SN FGSG AG DG++                       G+PPIFSL+RLD    AS+SSSS SW+ILAVAVGNGTLAMATSDCC+IRW+     G  EE+EISKRQEDTIHK+FLDPTGNHLL CLHGGETYYLHS T RPKRLLKW+GVVVEAVAFD++RCTEGSTKGIV+GTRSGDLYESSLESNGKERPFSLV+SLSRRQ R GDG                    XXX XXXXXXXXX         VAALYLESMSSAVHGETRVFVMAVTASPLRLY+FMGGPTLEV
Sbjct:    1 MNLFEDWDATEKRTQQQQQHPSGYAGXXXXXXXXXXXXXXXXXXRTQPPVSP-----TSRDVGSNPPQTRVQGGGRALDSSAWGQGQXXXXXXXXXXXXXXXXXXXXXXXXK--MSPFGGEGXXXXXXXGGVSSDLNPFAPPSSXXXXXXXXXXXGTGSTSNLFGSGAAGPDGSN---------------LVPAAKRGGEPPIFSLQRLD-ALKASSSSSSASWSILAVAVGNGTLAMATSDCCIIRWSASSPHGGSEEIEISKRQEDTIHKLFLDPTGNHLLACLHGGETYYLHSATTRPKRLLKWSGVVVEAVAFDSQRCTEGSTKGIVVGTRSGDLYESSLESNGKERPFSLVFSLSRRQSRGGDGTDGGSGPGGRSRTDSSGLGGXXXXXXXXXXXXXRVGGDAV-FVAALYLESMSSAVHGETRVFVMAVTASPLRLYLFMGGPTLEV 429
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BLAST of mRNA_L-elsbetiae_contig84.17402.1 vs. uniprot
Match: D8LI30_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI30_ECTSI)

HSP 1 Score: 249 bits (635), Expect = 1.360e-77
Identity = 164/196 (83.67%), Postives = 172/196 (87.76%), Query Frame = 3 
Query:  714 MATSDCCVIRWNTGRD-GRPEEVEISKRQEDTIHKMFLDPTGNHLLVCLHGGETYYLHSGTARPKRLLKWTGVVVEAVAFDAKRCTEGSTKGIVIGTRSGDLYESSLESNGKERPFSLVYSLSRRQPRAGDGAGXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXG---VVAALYLESMSSAVHGETRV 1289
            MATSDCC+IRWN     G  EE+EISKRQEDTIHK+FLDPTGNHLL CLHGGETYYLHS T RPKRLLKW+GVVVEAVAFD++RCTEGSTKGIV+GTRSGDLYESSLESNGKERPF LV+SLSRRQ R GD   XXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXX   G    VAALYLESMSSAVHGETRV
Sbjct:    1 MATSDCCIIRWNASTPHGGSEEIEISKRQEDTIHKLFLDPTGNHLLACLHGGETYYLHSATTRPKRLLKWSGVVVEAVAFDSQRCTEGSTKGIVVGTRSGDLYESSLESNGKERPFGLVFSLSRRQSRGGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVGGDAVFVAALYLESMSSAVHGETRV 196
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BLAST of mRNA_L-elsbetiae_contig84.17402.1 vs. uniprot
Match: A0A836CAW5_9STRA (Pep3_Vps18 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAW5_9STRA)

HSP 1 Score: 157 bits (397), Expect = 8.720e-38
Identity = 87/240 (36.25%), Postives = 133/240 (55.42%), Query Frame = 3 
Query:  672 WAILAVAVGNGTLAMATSDCCVIRWN-----------TGRDGRPEEVEISKRQEDTIHKMFLDPTGNHLLVCLHGGETYYLHSGTARPKRLLKWTGVVVEAVAFDAKRCTEGSTKGIVIGTRSGDLYESSLESNGKERPFSLVYSLSRRQPRAGDGAGXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXGVVAALYLESMSSAVHG-ETRVFVMAVTASPLRLYVFMGGPTLE 1355
            W+IL VA    T+AMATSDC VIRW+           +G  G  +EVEIS+RQED+I  ++LD +G+H++  LH GE ++LH G+ RP+RL +W  +    +AFD +RC++ +   ++IGT +G++Y+ +++++GK++P SL+Y LS  Q                                                V++L LES   +VHG + ++ V+A TA+P RLY F GGPTLE
Sbjct:   84 WSILCVAAAGSTIAMATSDCKVIRWSAPITAAQTSKGSGAGGPCDEVEISRRQEDSIRGLYLDASGHHIVTVLHSGEAWHLHRGSNRPRRLSRWGDLRATCIAFDRRRCSDAAAA-LIIGTAAGEIYDGAVDASGKDKPPSLLYVLSADQ-----------------------------------------------AVSSLLLESSPFSVHGRDPQLLVLAATAAPTRLYTFSGGPTLE 275
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BLAST of mRNA_L-elsbetiae_contig84.17402.1 vs. uniprot
Match: A0A7S2BMK1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BMK1_9STRA)

HSP 1 Score: 103 bits (257), Expect = 6.030e-22
Identity = 55/183 (30.05%), Postives = 92/183 (50.27%), Query Frame = 3 
Query:  807 IHKMFLDPTGNHLLVCLHGGETYYLHSGTARPKRLLKWTGVVVEAVAFDAKRCTEGSTKGIVIGTRSGDLYESSLESNGKERPFSLVYSLSRRQPRAGDGAGXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXGVVAALYLESMSSAVHGETRVFVMAVTASPLRLYVFMGGPTLE 1355
            I+++F+D  G+HL++C+   + YYLH+ + RPK++  W G ++EAV+FD  + +E +TK +++GT  G++ E++L+S GKE+  +L+Y L   +                                                + ALY  S+        R+ V+A TA+P RLY F+GGP LE
Sbjct:    2 IYRLFIDERGHHLIICMKSNDCYYLHARSNRPKKISSWKGKIIEAVSFDRDQVSEAATKAMLLGTADGEILETALDSQGKEKAPALLYKLDPIK------------------------------------------------ICALYHFSVGQ------RILVLAATAAPTRLYSFLGGPNLE 130
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BLAST of mRNA_L-elsbetiae_contig84.17402.1 vs. uniprot
Match: A7RKZ9_NEMVE (Vacuolar protein sorting-associated protein 18 homolog n=3 Tax=Nematostella vectensis TaxID=45351 RepID=A7RKZ9_NEMVE)

HSP 1 Score: 102 bits (255), Expect = 1.370e-19
Identity = 57/175 (32.57%), Postives = 98/175 (56.00%), Query Frame = 3 
Query:  606 PIFSLRRLDFRTAASASSSSGSWAILAVAVGNGTLAMATSDCCVIRWNTGRDGRPEEVEISKRQEDTIHKMFLDPTGNHLLVCLHGGETYYLHSGTARPKRLLKWTGVVVEAVAFDAKRCTEGSTKGIVIGTRSGDLYESSLE------SNGKERPFSLVYSLS----RRQPRAG 1100
            PIF  ++++FR  ++         ++ + V N T+A+  S   ++R +       + VE+ KR +D IH++F+DPT  HL+VC+   E+YYL   + +PK + K  G ++ AVA++  + TE ST+ I++GT SG L+E+ LE        G ER    +Y+++    R +P  G
Sbjct:   17 PIFRRQKINFRPPSN---------MVDLVVSNNTVAVGLSTNVIMRIDLANTSEIDSVEVCKRLDDAIHRIFIDPTARHLIVCMKSQESYYLARNSKKPKPMTKMRGHLISAVAWNKSKLTESSTQTILLGTSSGLLFETELEPEEKFFQGGVERFCKQLYNINSSGEREEPICG 182
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BLAST of mRNA_L-elsbetiae_contig84.17402.1 vs. uniprot
Match: A0A3M6T9G8_POCDA (Vacuolar protein sorting-associated protein 18 homolog n=4 Tax=Pocilloporidae TaxID=46729 RepID=A0A3M6T9G8_POCDA)

HSP 1 Score: 100 bits (249), Expect = 7.870e-19
Identity = 52/166 (31.33%), Postives = 98/166 (59.04%), Query Frame = 3 
Query:  600 DPPIFSLRRLDFRTAASASSSSGSWAILAVAVGNGTLAMATSDCCVIRWNTGRDGRPEEVEISKRQEDTIHKMFLDPTGNHLLVCLHGGETYYLHSGTARPKRLLKWTGVVVEAVAFDAKRCTEGSTKGIVIGTRSGDLYESSLE------SNGKERPFSLVYSLS 1079
            D PIF  ++++FR  ++         I+ V V N  +A+A S+  ++R +       + V+I+KR +D++H++F+DPT  HL+VC+   E++YL   + +PK L K  G ++ A+A++  + TE ST+ I++GT  G ++E+ LE        G E+ +  +Y+++
Sbjct:   41 DVPIFRRQKINFRPPSN---------IVDVVVCNNMVAIALSNNVLMRLDLTNPSEIDSVDITKRMDDSVHRIFMDPTARHLIVCMKSQESFYLARNSKKPKPLAKMKGHLINAIAWNKSKLTESSTQTILLGTTKGLVFETELEPEEKFFQGGLEKFWKQLYNVN 197
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BLAST of mRNA_L-elsbetiae_contig84.17402.1 vs. uniprot
Match: A0A6P8H1B0_ACTTE (Vacuolar protein sorting-associated protein 18 homolog n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8H1B0_ACTTE)

HSP 1 Score: 100 bits (249), Expect = 7.930e-19
Identity = 55/166 (33.13%), Postives = 95/166 (57.23%), Query Frame = 3 
Query:  600 DPPIFSLRRLDFRTAASASSSSGSWAILAVAVGNGTLAMATSDCCVIRWNTGRDGRPEEVEISKRQEDTIHKMFLDPTGNHLLVCLHGGETYYLHSGTARPKRLLKWTGVVVEAVAFDAKRCTEGSTKGIVIGTRSGDLYESSLE------SNGKERPFSLVYSLS 1079
            D PIF  ++++FR  ++         I  + V N T+ +A S   ++R +       + VE+S+R +DTI+K+FLDP+  HL++C++  E+YYL   + +PK L K  G ++ AVA++  + TE ST+ I++GT  G L+E+ +E        G ER    +Y ++
Sbjct:   42 DIPIFRRQKINFRPPSN---------IADLVVCNNTVVVALSTNFIMRIDLANTNEIDTVELSRRMDDTIYKIFLDPSARHLIICMNSQESYYLARNSKKPKLLTKLRGHLISAVAWNKSKLTETSTQTILLGTTKGLLFETEIEPEEKFFQGGIERFLKQLYDVN 198
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BLAST of mRNA_L-elsbetiae_contig84.17402.1 vs. uniprot
Match: A0A7S3GZI2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GZI2_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.090e-18
Identity = 41/97 (42.27%), Postives = 64/97 (65.98%), Query Frame = 3 
Query:  801 DTIHKMFLDPTGNHLLVCLHGGETYYLHSGTARPKRLLKWTGVVVEAVAFDAKRCTEGSTKGIVIGTRSGDLYESSLESNGKERPFSLVYSLSRRQP 1091
            D+I ++F+DPT NH+++ +   + YYLHS + RPK+L +  GV+ E +AFD   CTE +T+  + GT  G +YE S++S+GKE+    VY L +  P
Sbjct:   24 DSIERVFIDPTANHVIIAMKSTDNYYLHSRSQRPKKLSRLQGVI-ECIAFDRHNCTESATRSFLAGTSIGVIYEISVDSSGKEKLCQPVYQLEQPLP 119
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BLAST of mRNA_L-elsbetiae_contig84.17402.1 vs. uniprot
Match: UPI00071141C8 (hypothetical protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI00071141C8)

HSP 1 Score: 98.6 bits (244), Expect = 3.370e-18
Identity = 68/227 (29.96%), Postives = 108/227 (47.58%), Query Frame = 3 
Query:  684 AVAVGNGTLAMATSDCCVIRWNTGRDGRPEEVEISKRQEDTIHKMFLDPTGNHLLVCLHGGETYYLHSGTARPKRLLKWTGVVVEAVAFDAKRCTEGST--KGIVIGTRSGDLYESSLESNGKERPFSLVYSLSRRQPRAGDGAGXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXGVVAALYLESMSSAVHGETR-VFVMAVTASPLRLYVFMGGPTLE 1355
            A+A   G + +AT     IRWN      PEE+E+  + ED ++K+FLDPTGNH+++    G++YYLHS   +  +L +++G  VE++A++       ST  K I++GTR+G + E+ L+  GKE+    V+S+S+  P                                               + ++ +E       G  R  FVMA TA+P R + F+GGP  E
Sbjct:   84 AIAEAGGIVVIATEGKNFIRWNIKET--PEEIELPFK-EDKVNKVFLDPTGNHVVIVTVSGDSYYLHSSKTKAIQLKRFSGYTVESIAWNRIDGDANSTGEKSILMGTRNGKILETCLD--GKEKFVKEVFSMSQNMP-----------------------------------------------ICSIQMEVFPELTSGSPRKYFVMASTANPSRYFQFVGGPDFE 258
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BLAST of mRNA_L-elsbetiae_contig84.17402.1 vs. uniprot
Match: A0A196SHF3_BLAHN (Vacuolar protein sorting-associated protein 18 n=2 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SHF3_BLAHN)

HSP 1 Score: 98.2 bits (243), Expect = 4.490e-18
Identity = 68/251 (27.09%), Postives = 119/251 (47.41%), Query Frame = 3 
Query:  609 IFSLRRLDFRTAASA--SSSSGSWAILAVAVGNGTLAMATSDCCVIRWNTGRDGRPEEVEISKRQEDTIHKMFLDPTGNHLLVCLHGGETYYLHSGTARPKRLLKWTGVVVEAVAFDAKRCTEGSTKGIVIGTRSGDLYESSLESNGKERPFSLVYSLSRRQPRAGDGAGXXXXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXGVVAALYLESMSSAVHGETRVFVMAVTASPLRLYVFMGGPTLE 1355
            +FS+ R+    A  A     + S++I  +A     + +ATS   +IRWN      PE++E+  + ED +HK+F+DPTGNH+++    G+ YYLHS  ++   L +++   +E+VA+++       T  I++GTR+G + E+S++  GKE+    V+S+ +  P                                               + ++++E          + FVMA TA+P R + F+GGPT E
Sbjct:   57 MFSIHRVSIPGARKALKGKMAESFSINTMAEAANVIVIATSGKTLIRWNM--QDIPEDIELPFK-EDKVHKVFIDPTGNHVIITTVAGDCYYLHSSKSKVVVLKRFSEYHIESVAWNSLEGNPTCTGPILMGTRNGMILETSID--GKEKYIKQVFSMQQNMP-----------------------------------------------ICSIHIEHFPEVEGQGHKYFVMAATANPSRYFQFIGGPTFE 255
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig84.17402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQH0_9PHAE8.100e-11159.38Pep3_Vps18 domain-containing protein n=1 Tax=Ectoc... [more]
D8LI30_ECTSI1.360e-7783.67Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A836CAW5_9STRA8.720e-3836.25Pep3_Vps18 domain-containing protein n=1 Tax=Tribo... [more]
A0A7S2BMK1_9STRA6.030e-2230.05Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A7RKZ9_NEMVE1.370e-1932.57Vacuolar protein sorting-associated protein 18 hom... [more]
A0A3M6T9G8_POCDA7.870e-1931.33Vacuolar protein sorting-associated protein 18 hom... [more]
A0A6P8H1B0_ACTTE7.930e-1933.13Vacuolar protein sorting-associated protein 18 hom... [more]
A0A7S3GZI2_9STRA2.090e-1842.27Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
UPI00071141C83.370e-1829.96hypothetical protein n=1 Tax=Blastocystis sp. subt... [more]
A0A196SHF3_BLAHN4.490e-1827.09Vacuolar protein sorting-associated protein 18 n=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig84contigL-elsbetiae_contig84:442..4506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score249.6
Seed ortholog evalue2.7e-63
Seed eggNOG ortholog2880.D8LI30
Preferred nameVPS18
KEGG koko:K11303,ko:K20181
KEGG Pathwayko04138,ko05034,map04138,map05034
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000149,GO:0000323,GO:0001667,GO:0001845,GO:0002064,GO:0002065,GO:0002066,GO:0002791,GO:0002793,GO:0003006,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005856,GO:0005884,GO:0006605,GO:0006622,GO:0006623,GO:0006725,GO:0006726,GO:0006727,GO:0006728,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006886,GO:0006887,GO:0006897,GO:0006904,GO:0006906,GO:0006909,GO:0006914,GO:0006928,GO:0006950,GO:0006996,GO:0007032,GO:0007033,GO:0007034,GO:0007040,GO:0007041,GO:0007154,GO:0007220,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0007568,GO:0007610,GO:0007632,GO:0007634,GO:0008055,GO:0008057,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0008333,GO:0008340,GO:0008593,GO:0009056,GO:0009058,GO:0009267,GO:0009314,GO:0009416,GO:0009605,GO:0009628,GO:0009790,GO:0009888,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010256,GO:0010259,GO:0010631,GO:0010646,GO:0010647,GO:0010648,GO:0010876,GO:0012505,GO:0015031,GO:0015629,GO:0015711,GO:0015718,GO:0015721,GO:0015833,GO:0015849,GO:0015850,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016477,GO:0016482,GO:0018130,GO:0019058,GO:0019438,GO:0019538,GO:0019748,GO:0019889,GO:0019905,GO:0019953,GO:0021700,GO:0022406,GO:0022411,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023056,GO:0023057,GO:0030154,GO:0030260,GO:0030674,GO:0030707,GO:0030855,GO:0030897,GO:0030903,GO:0031338,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032456,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032879,GO:0032880,GO:0032940,GO:0032984,GO:0032991,GO:0033036,GO:0033043,GO:0033059,GO:0033060,GO:0033263,GO:0033365,GO:0033554,GO:0034613,GO:0034641,GO:0035542,GO:0040011,GO:0042440,GO:0042441,GO:0042558,GO:0042559,GO:0042594,GO:0042886,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043277,GO:0043324,GO:0043473,GO:0043474,GO:0043476,GO:0043482,GO:0043485,GO:0043933,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044403,GO:0044409,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0044703,GO:0045022,GO:0045176,GO:0045184,GO:0045202,GO:0045746,GO:0046148,GO:0046152,GO:0046158,GO:0046483,GO:0046718,GO:0046872,GO:0046903,GO:0046907,GO:0046914,GO:0046942,GO:0048066,GO:0048069,GO:0048072,GO:0048278,GO:0048284,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048568,GO:0048583,GO:0048585,GO:0048609,GO:0048731,GO:0048753,GO:0048757,GO:0048856,GO:0048869,GO:0048870,GO:0050708,GO:0050714,GO:0050789,GO:0050794,GO:0050896,GO:0050931,GO:0051036,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051128,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051301,GO:0051640,GO:0051641,GO:0051649,GO:0051674,GO:0051701,GO:0051704,GO:0051716,GO:0051806,GO:0051828,GO:0060034,GO:0060035,GO:0060036,GO:0060090,GO:0060429,GO:0060627,GO:0061024,GO:0061025,GO:0061356,GO:0061357,GO:0061462,GO:0061919,GO:0065007,GO:0065008,GO:0070201,GO:0070727,GO:0070925,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072665,GO:0072666,GO:0080171,GO:0090066,GO:0090087,GO:0090130,GO:0090132,GO:0090174,GO:0090382,GO:0090385,GO:0090386,GO:0090387,GO:0090389,GO:0097352,GO:0097708,GO:0098657,GO:0098796,GO:0098927,GO:0099023,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0140029,GO:0140056,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1903530,GO:1903532,GO:1904951
EggNOG free text desc.notochord cell vacuolation
EggNOG OGsKOG2034@1,KOG2034@2759
EC2.3.1.48
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036,ko04131
Exons4
Model size1358
Cds size1308
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig84.17402.1prot_L-elsbetiae_contig84.17402.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig84 442..4456 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816921.9524302-CDS-L-elsbetiae_contig84:441..8281622816921.9524302-CDS-L-elsbetiae_contig84:441..828Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig84 442..828 -
1691683914.3101773-CDS-L-elsbetiae_contig84:441..8281691683914.3101773-CDS-L-elsbetiae_contig84:441..828Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig84 442..828 -
1622816921.9667666-CDS-L-elsbetiae_contig84:1603..18001622816921.9667666-CDS-L-elsbetiae_contig84:1603..1800Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig84 1604..1800 -
1691683914.3235748-CDS-L-elsbetiae_contig84:1603..18001691683914.3235748-CDS-L-elsbetiae_contig84:1603..1800Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig84 1604..1800 -
1622816921.977569-CDS-L-elsbetiae_contig84:2658..29021622816921.977569-CDS-L-elsbetiae_contig84:2658..2902Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig84 2659..2902 -
1691683914.3377693-CDS-L-elsbetiae_contig84:2658..29021691683914.3377693-CDS-L-elsbetiae_contig84:2658..2902Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig84 2659..2902 -
1622816921.9942117-CDS-L-elsbetiae_contig84:3976..44561622816921.9942117-CDS-L-elsbetiae_contig84:3976..4456Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig84 3977..4456 -
1691683914.3481243-CDS-L-elsbetiae_contig84:3976..44561691683914.3481243-CDS-L-elsbetiae_contig84:3976..4456Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig84 3977..4456 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816922.005326-UTR-L-elsbetiae_contig84:4456..45061622816922.005326-UTR-L-elsbetiae_contig84:4456..4506Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig84 4457..4506 -
1691683914.35875-UTR-L-elsbetiae_contig84:4456..45061691683914.35875-UTR-L-elsbetiae_contig84:4456..4506Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig84 4457..4506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig84.17402.1

>prot_L-elsbetiae_contig84.17402.1 ID=prot_L-elsbetiae_contig84.17402.1|Name=mRNA_L-elsbetiae_contig84.17402.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=436bp
MNLFEDWDATEKRTQQQQQQKSQSQLLGPGKQQQQQQRRGAQPRRRGAQQ
QPPQPPPTSRDGHEPSKKREAQGGRGLLSSVWGQGPSPPRQAPQPAAPVR
SSATAAGSGSSSTMNPFSGAAGGASLNPFTPSSSSSNPFIGGGSSNPFGS
GMAGADGTSNQQQQQQQQQLVPAAGDQQHQRGGDPPIFSLRRLDFRTAAS
ASSSSGSWAILAVAVGNGTLAMATSDCCVIRWNTGRDGRPEEVEISKRQE
DTIHKMFLDPTGNHLLVCLHGGETYYLHSGTARPKRLLKWTGVVVEAVAF
DAKRCTEGSTKGIVIGTRSGDLYESSLESNGKERPFSLVYSLSRRQPRAG
DGAGGGGGGSGGGGSGSGGGGGGGGIGGAGGGPAGGGGGGDGGVVAALYL
ESMSSAVHGETRVFVMAVTASPLRLYVFMGGPTLEV
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mRNA from alignment at L-elsbetiae_contig84:442..4506-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig84.17402.1 ID=mRNA_L-elsbetiae_contig84.17402.1|Name=mRNA_L-elsbetiae_contig84.17402.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4065bp|location=Sequence derived from alignment at L-elsbetiae_contig84:442..4506- (Laminarionema elsbetiae ELsaHSoW15)
CGCACAGGCGGTGCTGGCTCGCCCTGTTGCATACAGGTGACTGACACGCC
ATGAATCTCTTCGAGGATTGGGATGCAACGGAAAAGCGTACCCAACAGCA
GCAGCAACAGAAGTCTCAGTCGCAGCTTTTGGGTCCCGGAAAACAGCAAC
AACAACAACAGAGACGCGGAGCACAACCGCGACGACGCGGAGCACAACAG
CAGCCGCCCCAGCCGCCACCGACGTCTCGAGATGGACACGAACCATCGAA
GAAAAGAGAAGCACAGGGGGGAAGAGGCTTGCTAAGCTCTGTCTGGGGGC
AGGGGCCGTCGCCACCCCGACAAGCACCGCAACCGGCAGCACCAGTACGA
TCCTCCGCAACAGCAGCGGGGAGCGGTTCTTCGAGCACGATGAACCCTTT
CTCAGGCGCAGCAGGCGGCGCTAGCCTGAACCCTTTCACGCCCTCCTCCT
CCTCCTCCAACCCATTCATCGGTGGAGGCTCTTCTAACCCGTTTGGCTCT
GGCATGGCAGGAGCAGATGGGACGTCAAACGTGAGTACACGAAGCAATTA
TACGAGACATGTGTCTACCGTAGGTGACATAAGATAAGACACCCCCTGGA
CCGAGATTGAAAGCTTGGTTACTCCGCAACGAATACGATTCTAAGCACAA
ACGCCATATTTTCGGACAGCTCTCGACGAGATCTTTCCAACCCCGCCCTT
TTCGGGACTGACGCTCTGCTTGCTGTGCGGTACTTGAGCTTTGAAAATCG
GTCCAGGGGGTGTCTTATCTTATGTCACCTACGGTAGTCTACATGTCTCC
CTTCTCCCCACCCTTCGCCCCGTCCCCTAGATAAACCCTCTCCCCATGAG
CTTAATAAACTATTTAGCTTGAGTTCCCTTCCGCAGAAGACGCAAAATGT
GTATCACGGATGGCTCGTGCTTGCTCATCCTTGCTCATCCAGACCATAGC
TTCCTATGGGAGGAATCCCCCGCACTCTGCTTTGCAGACCCAAGCCGCAG
GACGCAAGACTCCCAGCGGGTGCACCAGAATGGAACGCCGATTGGTGGGT
ACATACATACATGCACACCCTCTCGCTCCACCGACCGGCGGGGCTTACAG
CAAAAGAGGTGCCGCTTTTTCATTGCGCATGTACATAGGTCGGTCAGTCG
ATGATTACCACGTTCAGTGCGCATACTTCTCCACATCACATGATCATGCT
CTCCGTGAGAACCAATTATTTTATCAACCCCCCGCGATTTTCCACCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
ATCCACAGGNTACCCCTTTCGGTGCCCATACTTCCCCCCCTCCCATGTTC
CTGCCCCCCGTGAGAACCAATTTTTTTATCCCCCCCCCCCGATTTTCCCC
CCCCCCCCCCCCCCATCCATATCCATCTAAATCTCCCCCTTAAACAAACT
GCGCCCCCTCACGGTCGCATCGCCGCCTCTATCCACGCTCCCGCGGTTCG
GTCCTTGCTACCTCGCCGGGAACTCCCAACAACCAAATAATGCATTCAAC
ACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTCGTTCCCGCCGCCGGGG
ATCAGCAACATCAGCGAGGGGGGGACCCGCCGATCTTCTCCCTGCGGCGC
CTCGACTTCCGGACGGCGGCCTCTGCTTCCTCCTCTTCCGGCTCGTGGGC
CATCCTTGCCGTGGCCGTCGGGAACGGCACGCTGGCCATGGCCACCTCGG
ACTGCTGCGTCATCCGGTGGAACACTGGCCGGGACGGCCGACCCGAGGGT
GAGGAAGGGAGGGAGGGGAGGAGGGAGAGAGGGAGCATATATACTTCGTA
CGAAGTATGATATATACGTCATGTATGAGGGAAGGTGGTGGGTGGCCCAC
TGCTCTATGTCGGGGGCCGGGTGTGGATGGACGTGCATTGGAGGGGAGGG
GGGAGGGGAGGGGAGGGGGGGGGGGTGACTTTACCTTCGGGCCCCTTTTT
TTGTCGGCTGAGTCGTCGGACTTCCCCCCGCCCCCCCGCCCCCGCCGGCA
GATGCCGCGTGCATGCATGCATGCATGCTCGCAGCCGCCACTACTGTACT
TACTGCCTGTCTGTCGTCGCTGGGCGTTGGAACGGTTGGCGCAGTCCCGT
TTTACACCTTTTTGAAGCAACGCGGTACTCGAGAGCGCGATTTCACATTA
CCTAGTGTCTTGTTGAGCCCGCTGACACAATTCAGCAGGGGAGATATCAC
TACTACTACTGTGCTTGTGCCCAGGATAGACACAGCACACTGGCATGGTA
GAAAGAAAAAACATACCACTGGGTTACTACGTAGCGCCCCAGCGCACCAT
ACGCAGCGCCCCAAAATTGGTGCGCCGCTTCTAAATTTGCTCGGACCCTC
ATCCGAGCGCTGGTAGACGTGTGGGTATGTATCCGTAAAAAAAATAAAAA
AAATAAAAAGTGTACGTAAAACGGGGATGAGAGACTCAATCACACGCTTA
ACCCTCCCTGCCTTTCCCCCCCGTCCCTCCCTGGTTCGTGCCTCCGATGA
TCATTCACACCACCAACATGCGACCCAACGAATCAAAACGACCGAACGCA
GATGGCTTTTCCGCCCCCGCTCCCCCGCTCCCGCTCCCGCTCCCGCTCCC
GCGCAGAGGTCGAGATCTCGAAGCGGCAGGAGGACACGATCCACAAGATG
TTCCTGGACCCCACCGGCAACCACCTGCTGGTCTGCCTGCACGGTGGGGA
GACGTACTACCTCCACTCCGGCACGGCGCGGCCGAAGCGGCTGCTGAAGT
GGACCGGCGTGGTCGTCGAGGCAGTCGCGTTCGACGCCAAGCGGTGCACC
GAGGTTCGTCAGTCCTTTTCTTTGTTTTTTCTTTTTTCTTTTTTCTTTTT
TCGCTTTCTTGTTTTTTTTCTTGTTTTTTTTCTTTTAAAAATAAACAATG
AATCAAACATGGCAAGGACTCGATATGGGATTTATCTTTGTTTGCGTTCC
CGCCGGTTTTGGTGTGCGTGCATGCATGGGCATGCATGCACGCATGTGGA
TTTACACACGGATTTTTTCTAGAAGCGCGTGGCGGGAGGGGAAGAGGGGG
GGGGGGTGATCCACGCGCCGGTGTCCTCAGTAGATGCGCGGGAGGAAAGA
CAGTAGTGTTGTACGCGTGCGTATGCGGTTTACCGGTGCCGAGGGCCATC
CAGTGTCGTTGAGTGGATGGTGTGGGAGGTTTTCCTGCAACGGAGGTGCG
GGTATGCCCAGGGGTAGGGGCGGATTAGGCGTGCCCCTTTGGTGGAAAGC
ATTTACGGGGGGAAATTAAAGGTATTTTTTCGGTCGTTTGGAATGGGCGC
ACTAGGTGAAGAGTATGTGGCGGTAAATTTTGTCGCCAACGGGTAACGGG
TATCGTCTATTCTCTCCCGTATCTGCATTCATCCCGCATCTCCGTATCCC
CGTCCACGCCTCTCCCCCCAAAAGAACCGGCGCCGTGAAGCAGAGCCCCC
CTGCCAACTGGACGCAACTACTCGTTCTAGTCAAGTCTTGGGGAAAAATT
TCCGCTCGAAAGACGGCACGACCACCCTTCTCTTCCCTTCCCTTCCCCTC
GTTTTCCGAAACGAAACGACCAAAAAAGGGTTCCACGAAGGGCATCGTGA
TCGGCACGAGGTCGGGCGACCTGTACGAGTCCTCCCTGGAGAGCAACGGT
AAGGAGCGGCCGTTCAGCCTCGTCTACAGCCTCAGCCGCAGGCAGCCCAG
GGCGGGCGACGGGGCCGGCGGCGGCGGGGGCGGCAGCGGCGGTGGCGGCA
GTGGCAGTGGCGGCGGCGGCGGCGGCGGCGGGATCGGGGGGGCCGGCGGA
GGACCGGCGGGCGGGGGGGGGGGGGGCGACGGCGGCGTCGTCGCGGCGCT
CTACCTGGAGTCGATGAGCTCGGCCGTTCACGGGGAGACGAGGGTGTTTG
TCATGGCAGTTACGGCCAGCCCGCTGCGGCTTTATGTCTTCATGGGAGGT
CCGACGTTAGAGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig84:442..4506-

>mRNA_L-elsbetiae_contig84.17402.1 ID=mRNA_L-elsbetiae_contig84.17402.1|Name=mRNA_L-elsbetiae_contig84.17402.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2616bp|location=Sequence derived from alignment at L-elsbetiae_contig84:442..4506- (Laminarionema elsbetiae ELsaHSoW15)
ATGAATCTCTTCGAGGATTGGGATGCAACGGAAAAGCGTACCCAACAGCA
GCAGCAACAGAAGTCTCAGTCGCAGCTTTTGGGTCCCGGAAAACAGCAAC
AACAACAACAGAGACGCGGAGCACAACCGCGACGACGCGGAGCACAACAG
CAGCCGCCCCAGCCGCCACCGACGTCTCGAGATGGACACGAACCATCGAA
GAAAAGAGAAGCACAGGGGGGAAGAGGCTTGCTAAGCTCTGTCTGGGGGC
AGGGGCCGTCGCCACCCCGACAAGCACCGCAACCGGCAGCACCAGTACGA
TCCTCCGCAACAGCAGCGGGGAGCGGTTCTTCGAGCACGATGAACCCTTT
CTCAGGCGCAGCAGGCGGCGCTAGCCTGAACCCTTTCACGCCCTCCTCCT
CCTCCTCCAACCCATTCATCGGTGGAGGCTCTTCTAACCCGTTTGGCTCT
GGCATGGCAGGAGCAGATGGGACGTCAAACATGAATCTCTTCGAGGATTG
GGATGCAACGGAAAAGCGTACCCAACAGCAGCAGCAACAGAAGTCTCAGT
CGCAGCTTTTGGGTCCCGGAAAACAGCAACAACAACAACAGAGACGCGGA
GCACAACCGCGACGACGCGGAGCACAACAGCAGCCGCCCCAGCCGCCACC
GACGTCTCGAGATGGACACGAACCATCGAAGAAAAGAGAAGCACAGGGGG
GAAGAGGCTTGCTAAGCTCTGTCTGGGGGCAGGGGCCGTCGCCACCCCGA
CAAGCACCGCAACCGGCAGCACCAGTACGATCCTCCGCAACAGCAGCGGG
GAGCGGTTCTTCGAGCACGATGAACCCTTTCTCAGGCGCAGCAGGCGGCG
CTAGCCTGAACCCTTTCACGCCCTCCTCCTCCTCCTCCAACCCATTCATC
GGTGGAGGCTCTTCTAACCCGTTTGGCTCTGGCATGGCAGGAGCAGATGG
GACGTCAAACCAGCAGCAGCAGCAGCAGCAGCAGCAGCTCGTTCCCGCCG
CCGGGGATCAGCAACATCAGCGAGGGGGGGACCCGCCGATCTTCTCCCTG
CGGCGCCTCGACTTCCGGACGGCGGCCTCTGCTTCCTCCTCTTCCGGCTC
GTGGGCCATCCTTGCCGTGGCCGTCGGGAACGGCACGCTGGCCATGGCCA
CCTCGGACTGCTGCGTCATCCGGTGGAACACTGGCCGGGACGGCCGACCC
GAGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTCGTTCCCGCCGCCGGGG
ATCAGCAACATCAGCGAGGGGGGGACCCGCCGATCTTCTCCCTGCGGCGC
CTCGACTTCCGGACGGCGGCCTCTGCTTCCTCCTCTTCCGGCTCGTGGGC
CATCCTTGCCGTGGCCGTCGGGAACGGCACGCTGGCCATGGCCACCTCGG
ACTGCTGCGTCATCCGGTGGAACACTGGCCGGGACGGCCGACCCGAGGAG
GTCGAGATCTCGAAGCGGCAGGAGGACACGATCCACAAGATGTTCCTGGA
CCCCACCGGCAACCACCTGCTGGTCTGCCTGCACGGTGGGGAGACGTACT
ACCTCCACTCCGGCACGGCGCGGCCGAAGCGGCTGCTGAAGTGGACCGGC
GTGGTCGTCGAGGCAGTCGCGTTCGACGCCAAGCGGTGCACCGAGAGGTC
GAGATCTCGAAGCGGCAGGAGGACACGATCCACAAGATGTTCCTGGACCC
CACCGGCAACCACCTGCTGGTCTGCCTGCACGGTGGGGAGACGTACTACC
TCCACTCCGGCACGGCGCGGCCGAAGCGGCTGCTGAAGTGGACCGGCGTG
GTCGTCGAGGCAGTCGCGTTCGACGCCAAGCGGTGCACCGAGGGTTCCAC
GAAGGGCATCGTGATCGGCACGAGGTCGGGCGACCTGTACGAGTCCTCCC
TGGAGAGCAACGGTAAGGAGCGGCCGTTCAGCCTCGTCTACAGCCTCAGC
CGCAGGCAGCCCAGGGCGGGCGACGGGGCCGGCGGCGGCGGGGGCGGCAG
CGGCGGTGGCGGCAGTGGCAGTGGCGGCGGCGGCGGCGGCGGCGGGATCG
GGGGGGCCGGCGGAGGACCGGCGGGCGGGGGGGGGGGGGGCGACGGCGGC
GTCGTCGCGGCGCTCTACCTGGAGTCGATGAGCTCGGCCGTTCACGGGGA
GACGAGGGTGTTTGTCATGGCAGTTACGGCCAGCCCGCTGCGGCTTTATG
TCTTCATGGGAGGTCCGACGTTAGAGGTGGGTTCCACGAAGGGCATCGTG
ATCGGCACGAGGTCGGGCGACCTGTACGAGTCCTCCCTGGAGAGCAACGG
TAAGGAGCGGCCGTTCAGCCTCGTCTACAGCCTCAGCCGCAGGCAGCCCA
GGGCGGGCGACGGGGCCGGCGGCGGCGGGGGCGGCAGCGGCGGTGGCGGC
AGTGGCAGTGGCGGCGGCGGCGGCGGCGGCGGGATCGGGGGGGCCGGCGG
AGGACCGGCGGGCGGGGGGGGGGGGGGCGACGGCGGCGTCGTCGCGGCGC
TCTACCTGGAGTCGATGAGCTCGGCCGTTCACGGGGAGACGAGGGTGTTT
GTCATGGCAGTTACGGCCAGCCCGCTGCGGCTTTATGTCTTCATGGGAGG
TCCGACGTTAGAGGTG
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