mRNA_L-elsbetiae_contig8393.17397.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8393.17397.1
Unique NamemRNA_L-elsbetiae_contig8393.17397.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8393.17397.1 vs. uniprot
Match: D8LR35_ECTSI (Nad-dependent epimerase/dehydratase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR35_ECTSI)

HSP 1 Score: 173 bits (439), Expect = 4.560e-51
Identity = 85/97 (87.63%), Postives = 91/97 (93.81%), Query Frame = 1 
Query:    1 VSMNEFASIAMSFEGKELPIRHIPGPEGVRGRNSDNTLIKETLSWAPSVSIAEGLKKTYFWIKSQVEAEKTAGTENNYGTSEVVVQTTESLEQLSHK 291
            VSMN+FA+IAM FEGK+LPIRHIPGPEGVRGRNSDNTLI+E LSWAPSV+IAEGL+KTYFWIK QVEAEK AGT NNY TSEVVVQTTESLEQLSHK
Sbjct:  283 VSMNKFAAIAMGFEGKDLPIRHIPGPEGVRGRNSDNTLIREKLSWAPSVTIAEGLRKTYFWIKDQVEAEKAAGTGNNYDTSEVVVQTTESLEQLSHK 379
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BLAST of mRNA_L-elsbetiae_contig8393.17397.1 vs. uniprot
Match: A0A8J2X357_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X357_9STRA)

HSP 1 Score: 138 bits (348), Expect = 1.250e-37
Identity = 64/96 (66.67%), Postives = 80/96 (83.33%), Query Frame = 1 
Query:    1 VSMNEFASIAMSFEGKELPIRHIPGPEGVRGRNSDNTLIKETLSWAPSVSIAEGLKKTYFWIKSQVEAEKTAGTE-NNYGTSEVVVQTTESLEQLS 285
            + MN+FA +A+SFE K LPI+HIPGPEGVRGRNSDN +IKE L WAPS+ +AEGLKKTYFWIK+QVE +K AG +    GTSE+VVQTT+ L++L+
Sbjct:  265 IDMNDFAKLALSFEAKNLPIKHIPGPEGVRGRNSDNQMIKEKLGWAPSIPVAEGLKKTYFWIKAQVEKDKAAGLDITKLGTSEIVVQTTDDLDELA 360
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BLAST of mRNA_L-elsbetiae_contig8393.17397.1 vs. uniprot
Match: A0A4D9CQJ4_9STRA (Epimerase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CQJ4_9STRA)

HSP 1 Score: 138 bits (348), Expect = 1.430e-37
Identity = 65/97 (67.01%), Postives = 80/97 (82.47%), Query Frame = 1 
Query:    1 VSMNEFASIAMSFEGKELPIRHIPGPEGVRGRNSDNTLIKETLSWAPSVSIAEGLKKTYFWIKSQVEAEKTAGTENNYGTSEVVVQTTESLEQLSHK 291
            VSMN FA IAM FEGK+LPI+HIPGP+GVRGRNSDNTLI+E L W P +SI +GL++TYFWIK Q+E E+ AG   +Y +S+VVVQTTESL+ L+ K
Sbjct:  259 VSMNSFAEIAMGFEGKKLPIKHIPGPQGVRGRNSDNTLIREMLGWEPLISIEDGLRETYFWIKGQIEKERAAGMVFDYSSSKVVVQTTESLDALASK 355
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BLAST of mRNA_L-elsbetiae_contig8393.17397.1 vs. uniprot
Match: F0YA16_AURAN (Epimerase domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YA16_AURAN)

HSP 1 Score: 133 bits (335), Expect = 1.120e-35
Identity = 62/96 (64.58%), Postives = 77/96 (80.21%), Query Frame = 1 
Query:    1 VSMNEFASIAMSFEGKELPIRHIPGPEGVRGRNSDNTLIKETLSWAPSVSIAEGLKKTYFWIKSQVEAEKTAGTEN-NYGTSEVVVQTTESLEQLS 285
            + MN+FA +A+SFE KELPI+HIPGPEGVRGRNSDNT+IKE L WAPS+ +A GLKKTYFWIK  VE +K AG +    G SE+VVQ T+ L++L+
Sbjct:  274 IDMNDFAKLALSFESKELPIKHIPGPEGVRGRNSDNTMIKEKLGWAPSIPVAVGLKKTYFWIKDMVEKDKAAGIDTAKLGVSEIVVQKTDELDELA 369
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BLAST of mRNA_L-elsbetiae_contig8393.17397.1 vs. uniprot
Match: A0A7S2C9X7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C9X7_9STRA)

HSP 1 Score: 133 bits (335), Expect = 1.500e-35
Identity = 64/92 (69.57%), Postives = 78/92 (84.78%), Query Frame = 1 
Query:    1 VSMNEFASIAMSFEGKELPIRHIPGPEGVRGRNSDNTLIKETLSWAPSVSIAEGLKKTYFWIKSQVEAEKTAGTE-NNYGTSEVVVQTTESL 273
            VSMNEFA+IAMS+E K LPI+HIPGP+GVRGRNSDNTLI+E L W+PS+SI +GL+K YFWIK+Q +AE  +G +   YG S+VVVQTTESL
Sbjct:  267 VSMNEFAAIAMSYESKTLPIKHIPGPQGVRGRNSDNTLIREKLGWSPSISIRDGLEKAYFWIKAQADAEAASGVDITQYGHSKVVVQTTESL 358
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BLAST of mRNA_L-elsbetiae_contig8393.17397.1 vs. uniprot
Match: A0A6U1M3G1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1M3G1_9STRA)

HSP 1 Score: 132 bits (333), Expect = 1.940e-35
Identity = 66/98 (67.35%), Postives = 79/98 (80.61%), Query Frame = 1 
Query:    1 VSMNEFASIAMSFEGKELPIRHIPGPEGVRGRNSDNTLIKETLSWAPSVSIAEGLKKTYFWIKSQVEAEKTAGTE-NNYGTSEVVVQTTESLEQLSHK 291
            +SM +FA IAMSFE K+LPI+HI GP+GVRGRNSDNT+IKE L WAPS+SIAEGLKKTYFWIK QVE +   G + + Y +S VV Q T+SLEQL+ K
Sbjct:  265 LSMIDFAKIAMSFEDKDLPIKHIEGPQGVRGRNSDNTMIKERLGWAPSISIAEGLKKTYFWIKEQVEKDSEKGIDPSTYSSSVVVTQVTDSLEQLAGK 362
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BLAST of mRNA_L-elsbetiae_contig8393.17397.1 vs. uniprot
Match: A0A7S2KLP0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KLP0_9STRA)

HSP 1 Score: 127 bits (319), Expect = 7.550e-34
Identity = 60/96 (62.50%), Postives = 74/96 (77.08%), Query Frame = 1 
Query:    1 VSMNEFASIAMSFEGKELPIRHIPGPEGVRGRNSDNTLIKETLSWAPSVSIAEGLKKTYFWIKSQVEAEKTAGTENNYGTSEVVVQTTESLEQLSH 288
            V+M EFA+IA+SFE K LPIRH+ GP GVRGRNS+N LIKE L W PS+ IA+GLKKTYFWIK ++E EK AG   NY TSE+V Q  ++L +L +
Sbjct:  211 VNMIEFANIALSFEEKSLPIRHVKGPMGVRGRNSNNVLIKEKLGWEPSIKIADGLKKTYFWIKGEIEQEKAAGKAENYSTSEIVQQVDDTLMELGN 306
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BLAST of mRNA_L-elsbetiae_contig8393.17397.1 vs. uniprot
Match: A0A6U4FV39_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4FV39_9STRA)

HSP 1 Score: 127 bits (318), Expect = 3.690e-33
Identity = 61/95 (64.21%), Postives = 75/95 (78.95%), Query Frame = 1 
Query:    1 VSMNEFASIAMSFEGKELPIRHIPGPEGVRGRNSDNTLIKETLSWAPSVSIAEGLKKTYFWIKSQVEAEKTAGTE-NNYGTSEVVVQTTESLEQL 282
            VSMNEFA IAMSFEGK L + HIPGP+GVRGRNS+N LI+E L WAP ++IAEGL+KTYFWIK+QV++E+  G +   YG S VV Q T  +E+L
Sbjct:  266 VSMNEFADIAMSFEGKNLKVHHIPGPQGVRGRNSNNDLIREKLGWAPEIAIAEGLRKTYFWIKAQVDSEREEGVDVTQYGCSRVVQQDTSIIEKL 360
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BLAST of mRNA_L-elsbetiae_contig8393.17397.1 vs. uniprot
Match: UPI0003D6FCFA (GDP-mannose 3,5-epimerase 1-like n=1 Tax=Citrus sinensis TaxID=2711 RepID=UPI0003D6FCFA)

HSP 1 Score: 120 bits (301), Expect = 3.870e-33
Identity = 58/85 (68.24%), Postives = 69/85 (81.18%), Query Frame = 1 
Query:    1 VSMNEFASIAMSFEGKELPIRHIPGPEGVRGRNSDNTLIKETLSWAPSVSIAEGLKKTYFWIKSQVEAEKTAGTENN-YGTSEVV 252
            VSMNE A I +SFE K+LPI HIPGPEGVRGRNSDNTLIKE L WAPS+ + +GL+ TYFWIK Q+E EKT G + + YG+S+VV
Sbjct:   28 VSMNEMAEIVLSFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFWIKEQIEKEKTQGIDLSVYGSSKVV 112
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BLAST of mRNA_L-elsbetiae_contig8393.17397.1 vs. uniprot
Match: A0A7S2CJC0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CJC0_9STRA)

HSP 1 Score: 126 bits (316), Expect = 1.130e-32
Identity = 62/93 (66.67%), Postives = 75/93 (80.65%), Query Frame = 1 
Query:    1 VSMNEFASIAMSFEGKELPIRHIPGPEGVRGRNSDNTLIKETLSWAPSVSIAEGLKKTYFWIKSQVEAEKTAGTENN-YGTSEVVVQTTESLE 276
            VSMNEFA+IAMS+E K LPI+HIPGP+GVRGRNSDNT+I+E L W P + I +GLKK YFWIKS+ + E  AG +   YG S+VVVQ+TESLE
Sbjct:  279 VSMNEFAAIAMSYESKTLPIKHIPGPQGVRGRNSDNTMIREKLGWEPLIPIEDGLKKAYFWIKSKCDEEAAAGQDITLYGHSKVVVQSTESLE 371
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8393.17397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR35_ECTSI4.560e-5187.63Nad-dependent epimerase/dehydratase n=1 Tax=Ectoca... [more]
A0A8J2X357_9STRA1.250e-3766.67Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A4D9CQJ4_9STRA1.430e-3767.01Epimerase domain-containing protein n=2 Tax=Monodo... [more]
F0YA16_AURAN1.120e-3564.58Epimerase domain-containing protein n=1 Tax=Aureoc... [more]
A0A7S2C9X7_9STRA1.500e-3569.57Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6U1M3G1_9STRA1.940e-3567.35Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2KLP0_9STRA7.550e-3462.50Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A6U4FV39_9STRA3.690e-3364.21Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
UPI0003D6FCFA3.870e-3368.24GDP-mannose 3,5-epimerase 1-like n=1 Tax=Citrus si... [more]
A0A7S2CJC0_9STRA1.130e-3266.67Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8393contigL-elsbetiae_contig8393:358..1297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.2
Seed ortholog evalue1.2e-40
Seed eggNOG ortholog2880.D8LR35
Preferred nameGME
KEGG rclassRC00289,RC00403,RC01780
KEGG koko:K10046
KEGG ReactionR00889,R07672,R07673
KEGG Pathwayko00053,ko00520,ko01100,ko01110,map00053,map00520,map01100,map01110
KEGG ModuleM00114
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009110,GO:0009987,GO:0016051,GO:0016053,GO:0016853,GO:0016854,GO:0016857,GO:0019752,GO:0019852,GO:0019853,GO:0036094,GO:0042364,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046364,GO:0046394,GO:0047918,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0051287,GO:0071704,GO:0097159,GO:1901265,GO:1901363,GO:1901576
EggNOG free text desc.UDP-glucuronate decarboxylase activity
EggNOG OGsCOG0451@1,KOG1429@2759
EC5.1.3.18
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Ec32 ortholog descriptionGDP-mannose 3,5-epimerase
Ec32 orthologEc-06_004510.1
Exons2
Model size294
Cds size288
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816921.3440566-UTR-L-elsbetiae_contig8393:357..3631622816921.3440566-UTR-L-elsbetiae_contig8393:357..363Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8393 358..363 +
1691683913.8829174-UTR-L-elsbetiae_contig8393:357..3631691683913.8829174-UTR-L-elsbetiae_contig8393:357..363Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8393 358..363 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816921.3577583-CDS-L-elsbetiae_contig8393:363..5811622816921.3577583-CDS-L-elsbetiae_contig8393:363..581Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8393 364..581 +
1691683913.9011137-CDS-L-elsbetiae_contig8393:363..5811691683913.9011137-CDS-L-elsbetiae_contig8393:363..581Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8393 364..581 +
1622816921.370951-CDS-L-elsbetiae_contig8393:1227..12971622816921.370951-CDS-L-elsbetiae_contig8393:1227..1297Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8393 1228..1297 +
1691683913.9129875-CDS-L-elsbetiae_contig8393:1227..12971691683913.9129875-CDS-L-elsbetiae_contig8393:1227..1297Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8393 1228..1297 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8393.17397.1prot_L-elsbetiae_contig8393.17397.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8393 364..1297 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8393.17397.1

>prot_L-elsbetiae_contig8393.17397.1 ID=prot_L-elsbetiae_contig8393.17397.1|Name=mRNA_L-elsbetiae_contig8393.17397.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=96bp
MNEFASIAMSFEGKELPIRHIPGPEGVRGRNSDNTLIKETLSWAPSVSIA
EGLKKTYFWIKSQVEAEKTAGTENNYGTSEVVVQTTESLEQLSHK*
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mRNA from alignment at L-elsbetiae_contig8393:358..1297+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8393.17397.1 ID=mRNA_L-elsbetiae_contig8393.17397.1|Name=mRNA_L-elsbetiae_contig8393.17397.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=940bp|location=Sequence derived from alignment at L-elsbetiae_contig8393:358..1297+ (Laminarionema elsbetiae ELsaHSoW15)
GTGAGCATGAACGAGTTTGCGTCGATCGCGATGAGCTTCGAGGGCAAGGA
GCTCCCCATCCGACACATCCCCGGCCCCGAGGGGGTACGGGGGCGCAACA
GCGACAACACCCTCATCAAGGAGACCCTCTCGTGGGCCCCCTCCGTCAGC
ATCGCCGAGGGCCTGAAAAAGACGTACTTCTGGATCAAGAGCCAAGTAGA
GGCGGAGAAGACGGCGGGAACCGAGTAAGATATGCGTGTTGCGGTGCCCC
CACGACCAAACACACGTGTTGGGTCCTTTCCGGGTGTCCCCCTTCTTCAC
GTTGTTAAATTCAGCAGGTAGATGCGGGGAATGAATCGTTTCTGGGAGCT
TGAGGCGAGGGATCCTCCCACTCGATACGTGCGCCACGGAACCCCTGTGT
AACGTACGCCCACCCCGATCCGACCACTGGGGTCTGGTCTGCCTCTTCTT
GCCGGGCTCGCGAAATCCCTTGTGCCCGCTTCATGCGTCCACCAGCTCCC
ATAGCTGCTGGTGCCATTCCCCCCTTTTTCGCTATGAACACGGATTTAGG
TGGGTATTTGTTTTTGCCACCATCTGTTTCTCGCCCTCGAAGCGAATGCA
TAATGCTTAATTGTCCCGGCGGAGTTATATTGGTGCCGTTTTTTTGCGTA
CATTGGAGGAAAGCGACCACATCACCCACTTCCTCGCGCGGTAAAAATCA
TCCCCCTTGCATCCCCCCCCCCCTCAATGAGTACTCTAGGGTCGAAGAAG
CTTTCACGGCGACATTTTATTTGTTCTCACCACGTTTTCCCGTAAATGTT
CCTGTTCGTGTTGCTCGTCTGCTGTGGGCTATGCGTCTCTGCTGTCTCTC
CTGGCTCTCCTGGCTCTCAGGAACAACTACGGCACCTCGGAGGTCGTGGT
GCAGACCACGGAGTCGCTGGAGCAGCTGTCGCACAAGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8393:358..1297+

>mRNA_L-elsbetiae_contig8393.17397.1 ID=mRNA_L-elsbetiae_contig8393.17397.1|Name=mRNA_L-elsbetiae_contig8393.17397.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig8393:358..1297+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACGAGTTTGCGTCGATCGCGATGAGCTTCGAGGGCAAGGAGCTCCC
CATCCGACACATCCCCGGCCCCGAGGGGGTACGGGGGCGCAACAGCGACA
ACACCCTCATCAAGGAGACCCTCTCGTGGGCCCCCTCCGTCAGCATCGCC
GAGGGCCTGAAAAAGACGTACTTCTGGATCAAGAGCCAAGTAGAGGCGGA
GAAGACGGCGGGAACCGAATGAACGAGTTTGCGTCGATCGCGATGAGCTT
CGAGGGCAAGGAGCTCCCCATCCGACACATCCCCGGCCCCGAGGGGGTAC
GGGGGCGCAACAGCGACAACACCCTCATCAAGGAGACCCTCTCGTGGGCC
CCCTCCGTCAGCATCGCCGAGGGCCTGAAAAAGACGTACTTCTGGATCAA
GAGCCAAGTAGAGGCGGAGAAGACGGCGGGAACCGAGAACAACTACGGCA
CCTCGGAGGTCGTGGTGCAGACCACGGAGTCGCTGGAGCAGCTGTCGCAC
AAGTAGGAACAACTACGGCACCTCGGAGGTCGTGGTGCAGACCACGGAGT
CGCTGGAGCAGCTGTCGCACAAGTAG
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