mRNA_L-elsbetiae_contig839.17391.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig839.17391.1
Unique NamemRNA_L-elsbetiae_contig839.17391.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig839.17391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig839contigL-elsbetiae_contig839:17718..19276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size441
Cds size441
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig839.17391.1prot_L-elsbetiae_contig839.17391.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig839 17718..19276 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816920.7994535-CDS-L-elsbetiae_contig839:17717..177901622816920.7994535-CDS-L-elsbetiae_contig839:17717..17790Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig839 17718..17790 -
1691683913.4760783-CDS-L-elsbetiae_contig839:17717..177901691683913.4760783-CDS-L-elsbetiae_contig839:17717..17790Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig839 17718..17790 -
1622816920.8137817-CDS-L-elsbetiae_contig839:18072..183371622816920.8137817-CDS-L-elsbetiae_contig839:18072..18337Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig839 18073..18337 -
1691683913.4879193-CDS-L-elsbetiae_contig839:18072..183371691683913.4879193-CDS-L-elsbetiae_contig839:18072..18337Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig839 18073..18337 -
1622816920.8267963-CDS-L-elsbetiae_contig839:19173..192761622816920.8267963-CDS-L-elsbetiae_contig839:19173..19276Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig839 19174..19276 -
1691683913.504349-CDS-L-elsbetiae_contig839:19173..192761691683913.504349-CDS-L-elsbetiae_contig839:19173..19276Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig839 19174..19276 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig839.17391.1

>prot_L-elsbetiae_contig839.17391.1 ID=prot_L-elsbetiae_contig839.17391.1|Name=mRNA_L-elsbetiae_contig839.17391.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=147bp
AANCNKRRRRTQGGPTSGFVFCQSAEKKSSTLLRGCHWLETADDEPTNLA
SCLDIRADKQTPLHSLDLFEPLFEHVDHGGQQQQPEVGVQRGTDWFRGSC
PRGEPRARFLGGRVPLPRVARQRRRGRGFRNQRRSDRSGFSSSRHVP
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mRNA from alignment at L-elsbetiae_contig839:17718..19276-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig839.17391.1 ID=mRNA_L-elsbetiae_contig839.17391.1|Name=mRNA_L-elsbetiae_contig839.17391.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1559bp|location=Sequence derived from alignment at L-elsbetiae_contig839:17718..19276- (Laminarionema elsbetiae ELsaHSoW15)
GCGGCCAACTGCAATAAACGGAGAAGACGAACACAAGGTGGACCTACGAG
CGGATTCGTGTTTTGCCAATCCGCGGAAAAAAAATCCAGTACCCTTCTGA
GAGGTGAACGAAGTTCAACTAACAGCGGCTGCTTGTCGAGGGGATGGATG
AGGGTCGGTCGTATGTTCTACTCTCAGACTGCTAGCGAGATACATATCGG
TCTAGAAATTACAGTTGACAAAAACGCTTGTATTTGGAGCGGCCACTGCT
TCACGAAAGAATAGCACAAGCAGGTCACTTTATACGCAATGTGGGCAGGA
AGCACTACCGTGTTTCATGACGTAAGATACCACACCTCGGTGATATCGGA
CGTTGAAAATGAAAAATTCAAATCCCGTGGGTAGATGTACTCCGTATGTA
CCATATGTATGCATGTTTGTAGACTAGTAATATATGCATAAGTTCGAGAG
TTGGCACAGGTGGGCGATCGATAATTGTAAGTGATTTGAAACGGGCTTTA
GCCCAAAAATCAGGAACGAAAAATATGACACCTCAACATATTGTAGATGT
AGATATTAGTTTATAGACGTACGTTACTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGTTTGTACCCTAGGATATGTACTAGAT
TTTTAATTCGTATCTACAGTGTATTATGGTCGAAAGCTCGAAACCACTTG
ACATCCCTAATCCCCCCCCCCCCCCCCCCCCCCCCCCACAAAAAAAAACC
CCACAACGTGGGGGGAGGGCGGGGGGGGAGGCGCCCCCAAAAACACCCTC
CCTGTGTTTCCTTGCCCCCAANNNNNNNNNNTAAGATATATTCAAGATTT
TTAATTCTTATCTACAGTGTATTATGGTCGAAAGCCCGAAACCACTTGAC
ATCCCTAACCCCCCCCCCCCCCCGCCGTAAAAATAAAAGGCTGCCATTGG
TTGGAGACAGCGGACGACGAGCCGACCAACTTAGCCTCTTGCTTGGATAT
TCGCGCCGATAAACAAACACCTCTCCACAGCTTGGATCTTTTTGAGCCGT
TGTTTGAGCATGTCGACCACGGGGGCCAACAACAGCAACCGGAGGTTGGT
GTCCAGCGCGGAACGGACTGGTTTCGTGGAAGCTGTCCTCGCGGGGAACC
TCGGGCCCGATTTCTCGGCGGTCGCGTACCACTTCCAAGGGTGGCTCGAC
AGAGGTGCGGGTTATCTAGGAATCAGTCAGATATACTCCTATGTACAGAT
TTTACCTATTGTACCGCATGCCATGTTAGCTCACGGCATGTAAAGGCAGC
GATCTATGTAGACGCACCGTTTCCACCCCACTCGACCACTCGGGCGTGTT
GTTTTCTACTTACAGAATGTTGACTTTTTTTTGCGCTCTTTCTTCCCCCG
TGTGTATTTTTTTTTGTTGCGTTTTGTGTTTTGTGTGGCGTATGTACTCG
CCTCCGTGTTGCGTTATTGGGGGTGCGAGAGAGCAGACGTCGTGGACGCG
GTTTTCGAAATCAGCGCCGGTCCGACCGAAGCGGTTTCAGCTCTAGCCGG
CATGTTCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig839:17718..19276-

>mRNA_L-elsbetiae_contig839.17391.1 ID=mRNA_L-elsbetiae_contig839.17391.1|Name=mRNA_L-elsbetiae_contig839.17391.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=882bp|location=Sequence derived from alignment at L-elsbetiae_contig839:17718..19276- (Laminarionema elsbetiae ELsaHSoW15)
GCGGCCAACTGCAATAAACGGAGAAGACGAACACAAGGTGGACCTACGAG
CGGATTCGTGTTTTGCCAATCCGCGGAAAAAAAATCCAGTACCCTTCTGA
GAGGCGGCCAACTGCAATAAACGGAGAAGACGAACACAAGGTGGACCTAC
GAGCGGATTCGTGTTTTGCCAATCCGCGGAAAAAAAATCCAGTACCCTTC
TGAGAGGCTGCCATTGGTTGGAGACAGCGGACGACGAGCCGACCAACTTA
GCCTCTTGCTTGGATATTCGCGCCGATAAACAAACACCTCTCCACAGCTT
GGATCTTTTTGAGCCGTTGTTTGAGCATGTCGACCACGGGGGCCAACAAC
AGCAACCGGAGGTTGGTGTCCAGCGCGGAACGGACTGGTTTCGTGGAAGC
TGTCCTCGCGGGGAACCTCGGGCCCGATTTCTCGGCGGTCGCGTACCACT
TCCAAGGGTGGCTCGACAGAGGCTGCCATTGGTTGGAGACAGCGGACGAC
GAGCCGACCAACTTAGCCTCTTGCTTGGATATTCGCGCCGATAAACAAAC
ACCTCTCCACAGCTTGGATCTTTTTGAGCCGTTGTTTGAGCATGTCGACC
ACGGGGGCCAACAACAGCAACCGGAGGTTGGTGTCCAGCGCGGAACGGAC
TGGTTTCGTGGAAGCTGTCCTCGCGGGGAACCTCGGGCCCGATTTCTCGG
CGGTCGCGTACCACTTCCAAGGGTGGCTCGACAGAGACGTCGTGGACGCG
GTTTTCGAAATCAGCGCCGGTCCGACCGAAGCGGTTTCAGCTCTAGCCGG
CATGTTCCCACGTCGTGGACGCGGTTTTCGAAATCAGCGCCGGTCCGACC
GAAGCGGTTTCAGCTCTAGCCGGCATGTTCCC
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