mRNA_L-elsbetiae_contig8380.17384.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8380.17384.1
Unique NamemRNA_L-elsbetiae_contig8380.17384.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8380.17384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8380contigL-elsbetiae_contig8380:6520..6951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size432
Cds size366
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816920.2797418-CDS-L-elsbetiae_contig8380:6519..68851622816920.2797418-CDS-L-elsbetiae_contig8380:6519..6885Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8380 6520..6885 +
1691683913.0706887-CDS-L-elsbetiae_contig8380:6519..68851691683913.0706887-CDS-L-elsbetiae_contig8380:6519..6885Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8380 6520..6885 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816920.2931492-UTR-L-elsbetiae_contig8380:6885..69511622816920.2931492-UTR-L-elsbetiae_contig8380:6885..6951Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8380 6886..6951 +
1691683913.0804799-UTR-L-elsbetiae_contig8380:6885..69511691683913.0804799-UTR-L-elsbetiae_contig8380:6885..6951Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8380 6886..6951 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8380.17384.1prot_L-elsbetiae_contig8380.17384.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8380 6520..6885 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8380.17384.1

>prot_L-elsbetiae_contig8380.17384.1 ID=prot_L-elsbetiae_contig8380.17384.1|Name=mRNA_L-elsbetiae_contig8380.17384.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=122bp
RSTFLFYPKNSGLVRLLLFRCTYIHASVRSTTYCCVCTVTTGSTYQPGLR
RRGKSHRFFSSFTFFFFCPHLLPPLRCLAWFLSREGFSHPFPSSTVKSNF
VYSRALPLFPLSTAKSQDNHL*
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mRNA from alignment at L-elsbetiae_contig8380:6520..6951+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8380.17384.1 ID=mRNA_L-elsbetiae_contig8380.17384.1|Name=mRNA_L-elsbetiae_contig8380.17384.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=432bp|location=Sequence derived from alignment at L-elsbetiae_contig8380:6520..6951+ (Laminarionema elsbetiae ELsaHSoW15)
AGAAGTACGTTTTTGTTTTATCCTAAAAATTCTGGCCTAGTCCGCCTTCT
TCTCTTCCGGTGCACATACATACACGCTTCGGTGCGTTCCACTACATATT
GCTGTGTATGTACTGTTACAACCGGCTCGACGTACCAGCCGGGGTTACGC
AGGAGGGGGAAATCACACCGTTTTTTTTCGTCTTTTACTTTTTTCTTTTT
TTGTCCCCACCTCCTACCTCCTTTGCGGTGCTTGGCTTGGTTTTTATCGC
GAGAAGGGTTCAGCCATCCCTTTCCTTCGTCAACGGTCAAGTCAAATTTT
GTGTACTCACGAGCTCTTCCGCTTTTTCCGCTTTCTACTGCAAAGTCGCA
AGATAACCATCTTTAGTGACAATCGAACTCCGGACCTTGCCGCTAGTCTG
GTGAGTTAACGAGGAAACCACTAGACCACCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8380:6520..6951+

>mRNA_L-elsbetiae_contig8380.17384.1 ID=mRNA_L-elsbetiae_contig8380.17384.1|Name=mRNA_L-elsbetiae_contig8380.17384.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=732bp|location=Sequence derived from alignment at L-elsbetiae_contig8380:6520..6951+ (Laminarionema elsbetiae ELsaHSoW15)
AGAAGTACGTTTTTGTTTTATCCTAAAAATTCTGGCCTAGTCCGCCTTCT
TCTCTTCCGGTGCACATACATACACGCTTCGGTGCGTTCCACTACATATT
GCTGTGTATGTACTGTTACAACCGGCTCGACGTACCAGCCGGGGTTACGC
AGGAGGGGGAAATCACACCGTTTTTTTTCGTCTTTTACTTTTTTCTTTTT
TTGTCCCCACCTCCTACCTCCTTTGCGGTGCTTGGCTTGGTTTTTATCGC
GAGAAGGGTTCAGCCATCCCTTTCCTTCGTCAACGGTCAAGTCAAATTTT
GTGTACTCACGAGCTCTTCCGCTTTTTCCGCTTTCTACTGCAAAGTCGCA
AGATAACCATCTTTAGAGAAGTACGTTTTTGTTTTATCCTAAAAATTCTG
GCCTAGTCCGCCTTCTTCTCTTCCGGTGCACATACATACACGCTTCGGTG
CGTTCCACTACATATTGCTGTGTATGTACTGTTACAACCGGCTCGACGTA
CCAGCCGGGGTTACGCAGGAGGGGGAAATCACACCGTTTTTTTTCGTCTT
TTACTTTTTTCTTTTTTTGTCCCCACCTCCTACCTCCTTTGCGGTGCTTG
GCTTGGTTTTTATCGCGAGAAGGGTTCAGCCATCCCTTTCCTTCGTCAAC
GGTCAAGTCAAATTTTGTGTACTCACGAGCTCTTCCGCTTTTTCCGCTTT
CTACTGCAAAGTCGCAAGATAACCATCTTTAG
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