mRNA_L-elsbetiae_contig8379.17379.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8379.17379.1
Unique NamemRNA_L-elsbetiae_contig8379.17379.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8379.17379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8379contigL-elsbetiae_contig8379:849..1289 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size441
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8379.17379.1prot_L-elsbetiae_contig8379.17379.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8379 924..1274 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816919.7505984-UTR-L-elsbetiae_contig8379:848..9231622816919.7505984-UTR-L-elsbetiae_contig8379:848..923Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8379 849..923 +
1691683912.625161-UTR-L-elsbetiae_contig8379:848..9231691683912.625161-UTR-L-elsbetiae_contig8379:848..923Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8379 849..923 +
1622816919.7737157-UTR-L-elsbetiae_contig8379:1274..12891622816919.7737157-UTR-L-elsbetiae_contig8379:1274..1289Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8379 1275..1289 +
1691683912.6438642-UTR-L-elsbetiae_contig8379:1274..12891691683912.6438642-UTR-L-elsbetiae_contig8379:1274..1289Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8379 1275..1289 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816919.7615268-CDS-L-elsbetiae_contig8379:923..12741622816919.7615268-CDS-L-elsbetiae_contig8379:923..1274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8379 924..1274 +
1691683912.6349225-CDS-L-elsbetiae_contig8379:923..12741691683912.6349225-CDS-L-elsbetiae_contig8379:923..1274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8379 924..1274 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8379.17379.1

>prot_L-elsbetiae_contig8379.17379.1 ID=prot_L-elsbetiae_contig8379.17379.1|Name=mRNA_L-elsbetiae_contig8379.17379.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
MCRQSSHTWVTITSRRAIRKPLAHLAWSGGTPRREILYHPRSFWQRWSEL
LCPGYSSCARVFPRSRAESRYYSYHPPVASSCFPFPFIFLTYVSKTTQTD
VPHTKTNLLQQKQSQP*
back to top

mRNA from alignment at L-elsbetiae_contig8379:849..1289+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8379.17379.1 ID=mRNA_L-elsbetiae_contig8379.17379.1|Name=mRNA_L-elsbetiae_contig8379.17379.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=441bp|location=Sequence derived from alignment at L-elsbetiae_contig8379:849..1289+ (Laminarionema elsbetiae ELsaHSoW15)
GTTTGTACGTGTGGTCATGTTGTTGACGTCTGGGATTAGCTTCTGCTCGC
CCAGTCTGTCCCCAAATCACCTCGGATGTGCCGGCAAAGCTCACACACAT
GGGTCACGATAACAAGTCGACGAGCCATTCGCAAACCCTTGGCCCATTTG
GCTTGGTCGGGAGGCACTCCACGACGAGAAATATTATATCATCCAAGATC
GTTTTGGCAACGCTGGTCCGAACTCCTCTGCCCCGGCTACTCTTCTTGCG
CACGGGTTTTCCCACGTTCTCGCGCGGAGTCTCGCTACTACAGTTACCAC
CCGCCTGTTGCCTCTTCTTGTTTCCCCTTCCCCTTCATATTTTTGACATA
TGTATCCAAGACAACACAGACAGACGTACCCCACACAAAGACCAACTTAC
TACAACAAAAGCAGAGTCAGCCATAACTCCGAACGTTTCAT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig8379:849..1289+

>mRNA_L-elsbetiae_contig8379.17379.1 ID=mRNA_L-elsbetiae_contig8379.17379.1|Name=mRNA_L-elsbetiae_contig8379.17379.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig8379:849..1289+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCCGGCAAAGCTCACACACATGGGTCACGATAACAAGTCGACGAGC
CATTCGCAAACCCTTGGCCCATTTGGCTTGGTCGGGAGGCACTCCACGAC
GAGAAATATTATATCATCCAAGATCGTTTTGGCAACGCTGGTCCGAACTC
CTCTGCCCCGGCTACTCTTCTTGCGCACGGGTTTTCCCACGTTCTCGCGC
GGAGTCTCGCTACTACAGTTACCACCCGCCTGTTGCCTCTTCTTGTTTCC
CCTTCCCCTTCATATTTTTGACATATGTATCCAAGACAACACAGACAGAC
GTACCCCACACAAAGACCAACTTACTACAACAAAAGCAGAGTCAGCCATA
AATGTGCCGGCAAAGCTCACACACATGGGTCACGATAACAAGTCGACGAG
CCATTCGCAAACCCTTGGCCCATTTGGCTTGGTCGGGAGGCACTCCACGA
CGAGAAATATTATATCATCCAAGATCGTTTTGGCAACGCTGGTCCGAACT
CCTCTGCCCCGGCTACTCTTCTTGCGCACGGGTTTTCCCACGTTCTCGCG
CGGAGTCTCGCTACTACAGTTACCACCCGCCTGTTGCCTCTTCTTGTTTC
CCCTTCCCCTTCATATTTTTGACATATGTATCCAAGACAACACAGACAGA
CGTACCCCACACAAAGACCAACTTACTACAACAAAAGCAGAGTCAGCCAT
AA
back to top