mRNA_L-elsbetiae_contig8376.17377.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8376.17377.1
Unique NamemRNA_L-elsbetiae_contig8376.17377.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8376.17377.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8376contigL-elsbetiae_contig8376:2802..3156 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size355
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816919.6207728-CDS-L-elsbetiae_contig8376:2801..31551622816919.6207728-CDS-L-elsbetiae_contig8376:2801..3155Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8376 2802..3155 +
1691683912.5411367-CDS-L-elsbetiae_contig8376:2801..31551691683912.5411367-CDS-L-elsbetiae_contig8376:2801..3155Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8376 2802..3155 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8376.17377.1prot_L-elsbetiae_contig8376.17377.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8376 2802..3155 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8376.17377.1

>prot_L-elsbetiae_contig8376.17377.1 ID=prot_L-elsbetiae_contig8376.17377.1|Name=mRNA_L-elsbetiae_contig8376.17377.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp
GQSGIPQRNAVRLSSPQGTTLSTENVLWGQDGLCITIFLVGVITPFDSFE
KCLCGHYCCVRRLPGGALGLNQVQNIKYHILTAPLYLLSALILNSVEGFL
CNFSRTVSMYLIRTTHPH
back to top

mRNA from alignment at L-elsbetiae_contig8376:2802..3156+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8376.17377.1 ID=mRNA_L-elsbetiae_contig8376.17377.1|Name=mRNA_L-elsbetiae_contig8376.17377.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=355bp|location=Sequence derived from alignment at L-elsbetiae_contig8376:2802..3156+ (Laminarionema elsbetiae ELsaHSoW15)
GGCCAATCAGGCATCCCCCAGAGGAATGCGGTGAGGTTGTCAAGCCCACA
GGGGACCACCCTGTCCACGGAGAACGTTCTGTGGGGGCAGGACGGTCTCT
GTATCACGATTTTCCTTGTGGGCGTGATAACCCCGTTTGATTCCTTTGAG
AAATGCCTGTGTGGTCACTACTGCTGTGTTAGAAGATTACCGGGTGGTGC
TTTGGGGCTCAATCAAGTTCAAAATATAAAATATCATATTTTGACAGCCC
CTCTTTATTTACTCAGTGCTTTAATTCTTAATTCGGTTGAGGGTTTTCTT
TGCAATTTCTCGCGAACCGTGTCAATGTACTTAATCCGAACCACCCATCC
CCATC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig8376:2802..3156+

>mRNA_L-elsbetiae_contig8376.17377.1 ID=mRNA_L-elsbetiae_contig8376.17377.1|Name=mRNA_L-elsbetiae_contig8376.17377.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig8376:2802..3156+ (Laminarionema elsbetiae ELsaHSoW15)
GGCCAATCAGGCATCCCCCAGAGGAATGCGGTGAGGTTGTCAAGCCCACA
GGGGACCACCCTGTCCACGGAGAACGTTCTGTGGGGGCAGGACGGTCTCT
GTATCACGATTTTCCTTGTGGGCGTGATAACCCCGTTTGATTCCTTTGAG
AAATGCCTGTGTGGTCACTACTGCTGTGTTAGAAGATTACCGGGTGGTGC
TTTGGGGCTCAATCAAGTTCAAAATATAAAATATCATATTTTGACAGCCC
CTCTTTATTTACTCAGTGCTTTAATTCTTAATTCGGTTGAGGGTTTTCTT
TGCAATTTCTCGCGAACCGTGTCAATGTACTTAATCCGAACCACCCATCC
CCATGGCCAATCAGGCATCCCCCAGAGGAATGCGGTGAGGTTGTCAAGCC
CACAGGGGACCACCCTGTCCACGGAGAACGTTCTGTGGGGGCAGGACGGT
CTCTGTATCACGATTTTCCTTGTGGGCGTGATAACCCCGTTTGATTCCTT
TGAGAAATGCCTGTGTGGTCACTACTGCTGTGTTAGAAGATTACCGGGTG
GTGCTTTGGGGCTCAATCAAGTTCAAAATATAAAATATCATATTTTGACA
GCCCCTCTTTATTTACTCAGTGCTTTAATTCTTAATTCGGTTGAGGGTTT
TCTTTGCAATTTCTCGCGAACCGTGTCAATGTACTTAATCCGAACCACCC
ATCCCCAT
back to top