mRNA_L-elsbetiae_contig8372.17373.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8372.17373.1
Unique NamemRNA_L-elsbetiae_contig8372.17373.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8372.17373.1 vs. uniprot
Match: D8LJZ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJZ6_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 1.830e-17
Identity = 34/45 (75.56%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 FNPNKAQRFLLSPGDHFFVPVNNIYRLENHSERARAVVYWTIVKV 135
            F+   AQRFLLSPGDHF+VPVNN+YRLENHS+RA+AV+YWTI+K+
Sbjct:  767 FDAKTAQRFLLSPGDHFYVPVNNVYRLENHSDRAKAVIYWTIIKI 811
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BLAST of mRNA_L-elsbetiae_contig8372.17373.1 vs. uniprot
Match: A0A6H5KZX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZX0_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 4.650e-17
Identity = 34/44 (77.27%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:    1 FNPNKAQRFLLSPGDHFFVPVNNIYRLENHSERARAVVYWTIVK 132
            F+   AQRFLLSPGDHF+VPVNN+YRLENHS+RA+AV+YWTI+K
Sbjct:  865 FDAKTAQRFLLSPGDHFYVPVNNVYRLENHSDRAKAVIYWTIIK 908
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BLAST of mRNA_L-elsbetiae_contig8372.17373.1 vs. uniprot
Match: A0A7S2B2G0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B2G0_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 5.230e-12
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 FNPNKAQRFLLSPGDHFFVPVNNIYRLENHSERARAVVYWTIVK 132
            F P  AQRF+LS GDHFF+P  N+YRLENHS+     +YWTI+K
Sbjct:  137 FEPATAQRFILSAGDHFFIPPGNVYRLENHSKHKTCKLYWTIIK 180
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BLAST of mRNA_L-elsbetiae_contig8372.17373.1 vs. uniprot
Match: A0A7S2FXX0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FXX0_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 2.470e-10
Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 FNPNKAQRFLLSPGDHFFVPVNNIYRLENHSERARAVVYWTIVK 132
            F P  AQR+LLSPGD FFV   N+YRL+NHS++    ++WTI+K
Sbjct:  202 FEPESAQRYLLSPGDQFFVAPGNVYRLQNHSKKVDCKLFWTIIK 245
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BLAST of mRNA_L-elsbetiae_contig8372.17373.1 vs. uniprot
Match: A0A835YQ32_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ32_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.190e-9
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 FNPNKAQRFLLSPGDHFFVPVNNIYRLENHSERARAVVYWTIV 129
            F+   AQR+LLSPGDHF+VP  N+YRLENH+  A A + W I+
Sbjct:  119 FDDATAQRYLLSPGDHFYVPPRNVYRLENHAPDADAQICWAIL 161
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BLAST of mRNA_L-elsbetiae_contig8372.17373.1 vs. uniprot
Match: K3WQF2_GLOUD (CENP-C_C domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQF2_GLOUD)

HSP 1 Score: 52.4 bits (124), Expect = 1.310e-6
Identity = 23/44 (52.27%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 FNPNKAQRFLLSPGDHFFVPVNNIYRLENHSERARAVVYWTIVK 132
            F+  KA RFLL+PGD F+VP  N Y L+N+SE+A   +++TI+K
Sbjct:  559 FDTTKATRFLLNPGDEFYVPSRNAYYLKNYSEKATCDLHFTIMK 602
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BLAST of mRNA_L-elsbetiae_contig8372.17373.1 vs. uniprot
Match: A0A418B930_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418B930_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 4.480e-6
Identity = 24/44 (54.55%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:    1 FNPNKAQRFLLSPGDHFFVPVNNIYRLENHSERARAVVYWTIVK 132
            F+   AQRFLLSPGD +FVP  N Y L NHS+   A V + I+K
Sbjct:  256 FDHETAQRFLLSPGDEYFVPPQNAYYLRNHSKTVEAEVRFVIMK 299
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BLAST of mRNA_L-elsbetiae_contig8372.17373.1 vs. uniprot
Match: A0A024ULE9_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024ULE9_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 4.570e-6
Identity = 24/44 (54.55%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:    1 FNPNKAQRFLLSPGDHFFVPVNNIYRLENHSERARAVVYWTIVK 132
            F+   AQRFLLSPGD +FVP  N Y L NHS+   A V + I+K
Sbjct:  740 FDHETAQRFLLSPGDEYFVPPQNAYYLRNHSKTVEAEVRFVIMK 783
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BLAST of mRNA_L-elsbetiae_contig8372.17373.1 vs. uniprot
Match: A0A6G0X555_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X555_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 1.600e-5
Identity = 23/46 (50.00%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:    1 FNPNKAQRFLLSPGDHFFVPVNNIYRLENHSERARAVVYWTIVKVT 138
            ++   AQR+LLSPGD +FVP  N Y L NHS+   A V + I+K T
Sbjct:  755 YDEETAQRYLLSPGDEYFVPPENAYFLRNHSKTVEAEVRFMILKPT 800
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8372.17373.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LJZ6_ECTSI1.830e-1775.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KZX0_9PHAE4.650e-1777.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2B2G0_9STRA5.230e-1261.36Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2FXX0_9STRA2.470e-1056.82Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A835YQ32_9STRA2.190e-958.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K3WQF2_GLOUD1.310e-652.27CENP-C_C domain-containing protein n=1 Tax=Globisp... [more]
A0A418B930_9STRA4.480e-654.55Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A024ULE9_9STRA4.570e-654.55Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A6G0X555_9STRA1.600e-550.00Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8372contigL-elsbetiae_contig8372:7510..7647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.6
Seed ortholog evalue2.7e-14
Seed eggNOG ortholog2880.D8LJZ6
KEGG koko:K11497
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs29KWX@1,2RU66@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size138
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816919.2828612-CDS-L-elsbetiae_contig8372:7509..76471622816919.2828612-CDS-L-elsbetiae_contig8372:7509..7647Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8372 7510..7647 -
1691683912.3094108-CDS-L-elsbetiae_contig8372:7509..76471691683912.3094108-CDS-L-elsbetiae_contig8372:7509..7647Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8372 7510..7647 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8372.17373.1prot_L-elsbetiae_contig8372.17373.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8372 7510..7647 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8372.17373.1

>prot_L-elsbetiae_contig8372.17373.1 ID=prot_L-elsbetiae_contig8372.17373.1|Name=mRNA_L-elsbetiae_contig8372.17373.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=46bp
FNPNKAQRFLLSPGDHFFVPVNNIYRLENHSERARAVVYWTIVKVT
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mRNA from alignment at L-elsbetiae_contig8372:7510..7647-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8372.17373.1 ID=mRNA_L-elsbetiae_contig8372.17373.1|Name=mRNA_L-elsbetiae_contig8372.17373.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=138bp|location=Sequence derived from alignment at L-elsbetiae_contig8372:7510..7647- (Laminarionema elsbetiae ELsaHSoW15)
TTCAACCCGAACAAGGCTCAACGCTTCCTGCTCTCCCCGGGGGACCACTT
TTTCGTGCCGGTGAACAACATCTACCGCCTCGAGAACCACTCCGAGAGGG
CGAGGGCGGTGGTCTACTGGACCATTGTCAAGGTAACC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8372:7510..7647-

>mRNA_L-elsbetiae_contig8372.17373.1 ID=mRNA_L-elsbetiae_contig8372.17373.1|Name=mRNA_L-elsbetiae_contig8372.17373.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=276bp|location=Sequence derived from alignment at L-elsbetiae_contig8372:7510..7647- (Laminarionema elsbetiae ELsaHSoW15)
TTCAACCCGAACAAGGCTCAACGCTTCCTGCTCTCCCCGGGGGACCACTT
TTTCGTGCCGGTGAACAACATCTACCGCCTCGAGAACCACTCCGAGAGGG
CGAGGGCGGTGGTCTACTGGACCATTGTCAAGGTAACCTTCAACCCGAAC
AAGGCTCAACGCTTCCTGCTCTCCCCGGGGGACCACTTTTTCGTGCCGGT
GAACAACATCTACCGCCTCGAGAACCACTCCGAGAGGGCGAGGGCGGTGG
TCTACTGGACCATTGTCAAGGTAACC
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