mRNA_L-elsbetiae_contig837.17368.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig837.17368.1
Unique NamemRNA_L-elsbetiae_contig837.17368.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig837.17368.1 vs. uniprot
Match: D7G2U5_ECTSI (Autophagy-related protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2U5_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 5.010e-29
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1 
Query:   25 VICEKADRSDIPDIDKKKYLVPADLSTGQFIYVIRKRIKLDPEKAIFIFVNDTIPQT 195
            VICEKADRSDIPDIDKKKYLVPADLSTGQFIYVIRKRIKLDPEKAIFIFVNDTIPQT
Sbjct:   30 VICEKADRSDIPDIDKKKYLVPADLSTGQFIYVIRKRIKLDPEKAIFIFVNDTIPQT 86
[Close]
BLAST of mRNA_L-elsbetiae_contig837.17368.1 vs. uniprot
Match: A0A835Z040_9STRA (Autophagy-related protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z040_9STRA)

HSP 1 Score: 110 bits (276), Expect = 9.010e-27
Identity = 52/57 (91.23%), Postives = 56/57 (98.25%), Query Frame = 1 
Query:   25 VICEKADRSDIPDIDKKKYLVPADLSTGQFIYVIRKRIKLDPEKAIFIFVNDTIPQT 195
            VICEKAD+SDIPDIDKKKYLVPADL+ GQFIYVIRKR+KLDP+KAIFIFVNDTIPQT
Sbjct:   33 VICEKADKSDIPDIDKKKYLVPADLTVGQFIYVIRKRVKLDPDKAIFIFVNDTIPQT 89
[Close]
BLAST of mRNA_L-elsbetiae_contig837.17368.1 vs. uniprot
Match: A0A662WW48_9STRA (Autophagy-related protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WW48_9STRA)

HSP 1 Score: 103 bits (257), Expect = 2.450e-24
Identity = 48/57 (84.21%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:   25 VICEKADRSDIPDIDKKKYLVPADLSTGQFIYVIRKRIKLDPEKAIFIFVNDTIPQT 195
            VICEKADRSDIPDIDKKKYLVPADL+ GQF+YVIRKRIKL PEKAIFIF+N+ +P T
Sbjct:   25 VICEKADRSDIPDIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFINNVLPPT 81
[Close]
BLAST of mRNA_L-elsbetiae_contig837.17368.1 vs. uniprot
Match: A0A6A3L498_9STRA (Autophagy-related protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3L498_9STRA)

HSP 1 Score: 103 bits (257), Expect = 2.520e-24
Identity = 48/57 (84.21%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:   25 VICEKADRSDIPDIDKKKYLVPADLSTGQFIYVIRKRIKLDPEKAIFIFVNDTIPQT 195
            VICEKADRSDIPDIDKKKYLVPADL+ GQF+YVIRKRIKL PEKAIFIF+N+ +P T
Sbjct:   21 VICEKADRSDIPDIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFINNVLPPT 77
[Close]
BLAST of mRNA_L-elsbetiae_contig837.17368.1 vs. uniprot
Match: A0A7S4I7A6_9STRA (Autophagy-related protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I7A6_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.840e-24
Identity = 60/109 (55.05%), Postives = 74/109 (67.89%), Query Frame = 1 
Query:   25 VICEKADRSDIPDIDKKKYLVPADLSTGQFIYVIRKRIKLDPEKAIFIFVNDTIPQTCKWSRTFLFIYALTR-CMYLKHMYINTRALLYLSPHEHPKYLLGFQFCDEDC 348
            VICEKADRSDIPDIDKKKYLVPADL+ GQF YVIRKRIKL PEKA+F+F +++IP + K+        A TR C++L   ++ + +LL L  H  P Y       D DC
Sbjct:   91 VICEKADRSDIPDIDKKKYLVPADLTVGQFHYVIRKRIKLAPEKALFLFCSNSIPPSGKFHED-----AYTRRCLWL---FLTSPSLLCLFRHVFPLYTCAKSCADVDC 191
[Close]
BLAST of mRNA_L-elsbetiae_contig837.17368.1 vs. uniprot
Match: K3W768_GLOUD (Autophagy-related protein n=5 Tax=Oomycota TaxID=4762 RepID=K3W768_GLOUD)

HSP 1 Score: 103 bits (257), Expect = 4.220e-24
Identity = 48/57 (84.21%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:   25 VICEKADRSDIPDIDKKKYLVPADLSTGQFIYVIRKRIKLDPEKAIFIFVNDTIPQT 195
            VICEKADRSDIPDIDKKKYLVPADL+ GQF+YVIRKRIKL PEKAIFIF+N+ +P T
Sbjct:   21 VICEKADRSDIPDIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFINNVLPPT 77
[Close]
BLAST of mRNA_L-elsbetiae_contig837.17368.1 vs. uniprot
Match: ATG8_PHYIN (Autophagy-related protein 8 n=19 Tax=Peronosporaceae TaxID=4777 RepID=ATG8_PHYIN)

HSP 1 Score: 103 bits (257), Expect = 5.310e-24
Identity = 48/57 (84.21%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:   25 VICEKADRSDIPDIDKKKYLVPADLSTGQFIYVIRKRIKLDPEKAIFIFVNDTIPQT 195
            VICEKADRSDIPDIDKKKYLVPADL+ GQF+YVIRKRIKL PEKAIFIF+N+ +P T
Sbjct:   30 VICEKADRSDIPDIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFINNVLPPT 86
[Close]
BLAST of mRNA_L-elsbetiae_contig837.17368.1 vs. uniprot
Match: H2B2E0_KAZAF (Autophagy-related protein n=1 Tax=Kazachstania africana (strain ATCC 22294 / BCRC 22015 / CBS 2517 / CECT 1963 / NBRC 1671 / NRRL Y-8276) TaxID=1071382 RepID=H2B2E0_KAZAF)

HSP 1 Score: 102 bits (255), Expect = 1.070e-23
Identity = 48/57 (84.21%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:   25 VICEKADRSDIPDIDKKKYLVPADLSTGQFIYVIRKRIKLDPEKAIFIFVNDTIPQT 195
            VICEKAD+SDIPDIDK+KYLVPADL+ GQF+YVIRKRI L PEKAIFIFVNDT+P T
Sbjct:   31 VICEKADKSDIPDIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPT 87
[Close]
BLAST of mRNA_L-elsbetiae_contig837.17368.1 vs. uniprot
Match: A0A0P1A6U3_PLAHL (Autophagy-related protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A6U3_PLAHL)

HSP 1 Score: 103 bits (257), Expect = 1.410e-23
Identity = 48/57 (84.21%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:   25 VICEKADRSDIPDIDKKKYLVPADLSTGQFIYVIRKRIKLDPEKAIFIFVNDTIPQT 195
            VICEKADRSDIPDIDKKKYLVPADL+ GQF+YVIRKRIKL PEKAIFIF+N+ +P T
Sbjct:   57 VICEKADRSDIPDIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFINNVLPPT 113
[Close]
BLAST of mRNA_L-elsbetiae_contig837.17368.1 vs. uniprot
Match: A0A6A4BA70_9STRA (Autophagy-related protein (Fragment) n=4 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4BA70_9STRA)

HSP 1 Score: 101 bits (251), Expect = 2.090e-23
Identity = 47/58 (81.03%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:   22 QVICEKADRSDIPDIDKKKYLVPADLSTGQFIYVIRKRIKLDPEKAIFIFVNDTIPQT 195
            QVICEKADRSDIPDIDKKKYLVPADL+ GQF+YVIRKRIK+ PEKAIFIF+N+ +  T
Sbjct:    6 QVICEKADRSDIPDIDKKKYLVPADLTVGQFVYVIRKRIKVSPEKAIFIFINNVLSPT 63
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig837.17368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2U5_ECTSI5.010e-29100.00Autophagy-related protein n=2 Tax=Ectocarpus TaxID... [more]
A0A835Z040_9STRA9.010e-2791.23Autophagy-related protein n=1 Tax=Tribonema minus ... [more]
A0A662WW48_9STRA2.450e-2484.21Autophagy-related protein n=1 Tax=Nothophytophthor... [more]
A0A6A3L498_9STRA2.520e-2484.21Autophagy-related protein n=2 Tax=Phytophthora rub... [more]
A0A7S4I7A6_9STRA2.840e-2455.05Autophagy-related protein n=2 Tax=Odontella aurita... [more]
K3W768_GLOUD4.220e-2484.21Autophagy-related protein n=5 Tax=Oomycota TaxID=4... [more]
ATG8_PHYIN5.310e-2484.21Autophagy-related protein 8 n=19 Tax=Peronosporace... [more]
H2B2E0_KAZAF1.070e-2384.21Autophagy-related protein n=1 Tax=Kazachstania afr... [more]
A0A0P1A6U3_PLAHL1.410e-2384.21Autophagy-related protein n=1 Tax=Plasmopara halst... [more]
A0A6A4BA70_9STRA2.090e-2381.03Autophagy-related protein (Fragment) n=4 Tax=Phyto... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig837contigL-elsbetiae_contig837:1085..2367 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.9
Seed ortholog evalue3.3e-24
Seed eggNOG ortholog2880.D7G2U5
Preferred nameFMN1
KEGG koko:K08341,ko:K10367,ko:K13335,ko:K16578
KEGG TC3.A.20.1,9.A.17.1
KEGG Pathwayko04068,ko04136,ko04137,ko04138,ko04139,ko04140,ko04146,ko04212,ko04371,ko04621,ko04727,ko05167,map04068,map04136,map04137,map04138,map04139,map04140,map04146,map04212,map04371,map04621,map04727,map05167
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000045,GO:0000139,GO:0000149,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0000407,GO:0000421,GO:0000422,GO:0002790,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005776,GO:0005794,GO:0005829,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0006888,GO:0006891,GO:0006914,GO:0006950,GO:0006979,GO:0006995,GO:0006996,GO:0007005,GO:0007033,GO:0007034,GO:0007154,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008289,GO:0008429,GO:0009056,GO:0009267,GO:0009306,GO:0009405,GO:0009605,GO:0009653,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0009991,GO:0010506,GO:0010508,GO:0012501,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0016236,GO:0016237,GO:0016239,GO:0016241,GO:0019222,GO:0019898,GO:0019899,GO:0019954,GO:0022411,GO:0022607,GO:0030154,GO:0030435,GO:0030436,GO:0031090,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031386,GO:0031503,GO:0031667,GO:0031668,GO:0031669,GO:0031984,GO:0032258,GO:0032502,GO:0032781,GO:0032940,GO:0033036,GO:0033365,GO:0033554,GO:0034599,GO:0034613,GO:0034629,GO:0034727,GO:0042221,GO:0042594,GO:0042886,GO:0043085,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043462,GO:0043562,GO:0043934,GO:0043936,GO:0044085,GO:0044093,GO:0044237,GO:0044248,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044804,GO:0044805,GO:0045184,GO:0046903,GO:0046907,GO:0048102,GO:0048193,GO:0048518,GO:0048522,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051117,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0061024,GO:0061025,GO:0061709,GO:0061726,GO:0061912,GO:0061919,GO:0065007,GO:0065009,GO:0070727,GO:0070887,GO:0070925,GO:0071211,GO:0071496,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072665,GO:0072666,GO:0098588,GO:0098791,GO:0098805,GO:0098852,GO:1903008,GO:1905037
EggNOG free text desc.cellular response to nitrogen starvation
EggNOG OGsKOG1654@1,KOG1654@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko03036,ko04121,ko04131,ko04812
Ec32 ortholog descriptionMicrotubule-associated anchor protein involved in autophagy and membrane trafficking
Ec32 orthologEc-16_001520.1
Exons2
Model size914
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig837.17368.1prot_L-elsbetiae_contig837.17368.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig837 1085..1807 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816918.7977347-CDS-L-elsbetiae_contig837:1084..11901622816918.7977347-CDS-L-elsbetiae_contig837:1084..1190Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig837 1085..1190 +
1691683911.9039154-CDS-L-elsbetiae_contig837:1084..11901691683911.9039154-CDS-L-elsbetiae_contig837:1084..1190Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig837 1085..1190 +
1622816918.8092165-CDS-L-elsbetiae_contig837:1559..18071622816918.8092165-CDS-L-elsbetiae_contig837:1559..1807Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig837 1560..1807 +
1691683911.9196868-CDS-L-elsbetiae_contig837:1559..18071691683911.9196868-CDS-L-elsbetiae_contig837:1559..1807Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig837 1560..1807 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816918.8214154-UTR-L-elsbetiae_contig837:1807..23671622816918.8214154-UTR-L-elsbetiae_contig837:1807..2367Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig837 1808..2367 +
1691683911.9315784-UTR-L-elsbetiae_contig837:1807..23671691683911.9315784-UTR-L-elsbetiae_contig837:1807..2367Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig837 1808..2367 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig837.17368.1

>prot_L-elsbetiae_contig837.17368.1 ID=prot_L-elsbetiae_contig837.17368.1|Name=mRNA_L-elsbetiae_contig837.17368.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp
MAVDCSPQVICEKADRSDIPDIDKKKYLVPADLSTGQFIYVIRKRIKLDP
EKAIFIFVNDTIPQTCKWSRTFLFIYALTRCMYLKHMYINTRALLYLSPH
EHPKYLLGFQFCDEDCF*
back to top

mRNA from alignment at L-elsbetiae_contig837:1085..2367+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig837.17368.1 ID=mRNA_L-elsbetiae_contig837.17368.1|Name=mRNA_L-elsbetiae_contig837.17368.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1283bp|location=Sequence derived from alignment at L-elsbetiae_contig837:1085..2367+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGTCGATTGTTCGCCGCAGGTGATCTGCGAGAAGGCAGACCGCAG
CGACATCCCGGACATCGACAAGAAGAAGTACTTGGTGCCGGCAGACCTTA
GCACTGGTGGGTGGGTGCCTCTACATCACCCCCTTCGCTTCGTTGACGTT
CGCGGCCTTTAAGGGTCTCGCGTCTGTCTGTTGGTCACCAAGGTTGCTTG
TTGGCCGGCCTTTGTCGCTGCTGACGTGGCACATCATGCCCACGCTTTTG
GAGCATTTTTTTTGTTGCTCTCCTGCCGAGGTTGGCGCCGCCACCCCATG
TGCATCATGGATGGTACATAGATGTGCTCGGTGATATTTCGTTACATATG
TACGCCTCGAAACCCCTCCGGCGTCATGTCCATCCCAGCTCGAGCTCTCG
TCTTGCGTCCTCGGTGGTGTGCGTCTCTCGTCTGCCTGCGCTCTGCTCCG
ATTCTGTGCCATGATACGCGTCCAGGCCAGTTCATTTACGTCATCCGCAA
GCGGATCAAGCTCGACCCGGAGAAGGCTATCTTCATTTTTGTCAACGACA
CCATACCACAGACCTGTAAGTGGTCTCGTACCTTCTTGTTTATTTACGCT
CTTACACGATGCATGTACTTGAAACATATGTACATCAATACCCGCGCACT
GCTGTATTTGTCTCCACACGAGCATCCTAAGTATCTTCTGGGTTTTCAGT
TTTGCGACGAAGACTGCTTTTAAGAAGACTGCTGTTGAGTCCTTCCTCAG
CAAATTGCGAGGCTTTTTTATGGGGCGTCGTCTTCCCACGCTCGCTGCGA
TGCGTCTCGCCCACAGAAGGCCGCTGTTTCTGTTTTTGGGTGGTTGCGCA
TTTTTCTCGGCGGCACCGCTGCCTCCTGTTTGGACGGTCTTAACACACGC
GTTGGGTCTCGCTGCATGAGCGCACGCACGCGCCATTGGTGGCAACATCT
CGTTCTCGTGCCACCGGCTGGCTGTCATAGAGCTCGGCGTTGACTGTCTG
GACTTGATGGGGCTCCTTCACCCCCGCTGGGCGCTCACCGGTTATTTCTC
TCCGATCCGGTGTCTGCTGCTGTGTCCGTCGGCGTGCCTCTTGCCTTTTC
CCGCCTTGCACCCTTTTGTGTTGCTGCTCCCTCCACACGCGTGTGCGTCA
CGGCTGTTTGAAACACCCAAAACACAATGCCGCCGCCACGACGTCACCAG
CTGCGCTCATGTCTCAGGTGTACGAGCACCAGAAGGACGAGGACGGCTTC
TTGTACATCACTTACAGCGGGGAAAACACGTTT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig837:1085..2367+

>mRNA_L-elsbetiae_contig837.17368.1 ID=mRNA_L-elsbetiae_contig837.17368.1|Name=mRNA_L-elsbetiae_contig837.17368.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig837:1085..2367+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGTCGATTGTTCGCCGCAGGTGATCTGCGAGAAGGCAGACCGCAG
CGACATCCCGGACATCGACAAGAAGAAGTACTTGGTGCCGGCAGACCTTA
GCACTGATGGCGGTCGATTGTTCGCCGCAGGTGATCTGCGAGAAGGCAGA
CCGCAGCGACATCCCGGACATCGACAAGAAGAAGTACTTGGTGCCGGCAG
ACCTTAGCACTGGCCAGTTCATTTACGTCATCCGCAAGCGGATCAAGCTC
GACCCGGAGAAGGCTATCTTCATTTTTGTCAACGACACCATACCACAGAC
CTGTAAGTGGTCTCGTACCTTCTTGTTTATTTACGCTCTTACACGATGCA
TGTACTTGAAACATATGTACATCAATACCCGCGCACTGCTGTATTTGTCT
CCACACGAGCATCCTAAGTATCTTCTGGGTTTTCAGTTTTGCGACGAAGA
CTGCTTTTAAGCCAGTTCATTTACGTCATCCGCAAGCGGATCAAGCTCGA
CCCGGAGAAGGCTATCTTCATTTTTGTCAACGACACCATACCACAGACCT
GTAAGTGGTCTCGTACCTTCTTGTTTATTTACGCTCTTACACGATGCATG
TACTTGAAACATATGTACATCAATACCCGCGCACTGCTGTATTTGTCTCC
ACACGAGCATCCTAAGTATCTTCTGGGTTTTCAGTTTTGCGACGAAGACT
GCTTTTAA
back to top