mRNA_L-elsbetiae_contig8367.17367.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig8367.17367.1 vs. uniprot
Match: D7G522_ECTSI (MYND-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G522_ECTSI) HSP 1 Score: 617 bits (1590), Expect = 1.050e-219 Identity = 314/365 (86.03%), Postives = 339/365 (92.88%), Query Frame = 1 Query: 1 MMVNHNEFGITEEEFEEHGNDEGAVQELLLEKMRRFISRHPEAAGDDSIKTLTALAVDELLLNGNLENSRLLYQPVPFLKFFKEHGVNGMDSRRADLEKAAEQVNSVETEEGMLSALTIGVGSNCKCLTLFTAGHPLKPQEEEPEGLTYAESLAAPFLKIPVKKTNAMGQDSRLHVEIRRRDLIRLCAPNDKPPYLCILIAPASRYIFHSFPIEETEADKAFMHVLEGIVMAVVTEGMGMIEEAVRIRPANLTTTDPLLAKFLTPLLEGTRVSVAASSDKVVNADSDAKTKDSPLIAIMDGVFADFNIDVTKKDSKRKLPIGDTMSEEAKFKIKSRTASGKEKYIADPENEKREIPEKMMACKGC 1095 MMVNHNEFGITEEEFEEHGNDE AVQ+LLL+KM+ FI++HPEAAGDD+IKTLTALAVDELLLNGNLEN+RL++QPVPFLKFFKEHGV G+DSRRADL+KA E+VN+V TE GML ALT VGSNCKCLTLFT G+PLKPQEEEPEGLTYAESLAAPFLKIPVKKTNA GQDSRLHVEIRR L AP+DK PYLCILIAPASRY+FHSFPIEET+ADKAFMHVLEGIVM VVTEGMGMIEEAVRIRPA LTTTDPLLA FL+PLLEGTRVSVAASSDKVVNADSDAKTK+SPLIAIMDGV+ADF ID+TK +SKRKLPIGD MS+EA FK+KSRTASGKEKYIADPE EKR+IPEKMMACKGC Sbjct: 1 MMVNHNEFGITEEEFEEHGNDEAAVQDLLLQKMKNFITKHPEAAGDDAIKTLTALAVDELLLNGNLENARLVFQPVPFLKFFKEHGVAGIDSRRADLDKATEEVNAVATEAGMLEALTKAVGSNCKCLTLFTPGNPLKPQEEEPEGLTYAESLAAPFLKIPVKKTNATGQDSRLHVEIRR-----LPAPHDKAPYLCILIAPASRYVFHSFPIEETQADKAFMHVLEGIVMGVVTEGMGMIEEAVRIRPAQLTTTDPLLANFLSPLLEGTRVSVAASSDKVVNADSDAKTKESPLIAIMDGVYADFFIDLTKANSKRKLPIGDNMSDEAAFKVKSRTASGKEKYIADPEKEKRKIPEKMMACKGC 360
BLAST of mRNA_L-elsbetiae_contig8367.17367.1 vs. uniprot
Match: A0A6H5KRE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRE4_9PHAE) HSP 1 Score: 355 bits (911), Expect = 2.630e-120 Identity = 184/212 (86.79%), Postives = 195/212 (91.98%), Query Frame = 1 Query: 283 ADLEKAAEQVNSVETEEGMLSALTIGVGSNCKCLTLFTAGHPLKPQEEEPEGLTYAESLAAPFLKIPVKKTNAMGQDSRLHVEIRRRDLIRLCAPNDKPPYLCILIAPASRYIFHSFPIEETEADKAFMHVLEGIVMAVVTEGMGMIEEAVRIRPANLTTTDPLLAKFLTPLLEGTRVSVAASSDKVVNADSDAKTKDSPLIAIMDGVFADF 918 ADL+KAAE+VN+V TE GML ALT VGS C CLTLFT G+PLKPQEEEPEGLTYAESLAAPFLKIPVKKTNA+GQDSRLHVEIRR L AP+DK PYLCILIAPASRY+FHSFPIEET+ADKAFMHVLEGIVM VVTEGMGMIEEAVRIRPA LTTTDPLLAKFL+PLLEGTRVSVAASSDKVVNADSDAKTK+SPLIAIMDGV+ADF Sbjct: 6 ADLDKAAEEVNAVATEAGMLEALTKAVGSKCNCLTLFTPGNPLKPQEEEPEGLTYAESLAAPFLKIPVKKTNAVGQDSRLHVEIRR-----LPAPHDKAPYLCILIAPASRYVFHSFPIEETQADKAFMHVLEGIVMGVVTEGMGMIEEAVRIRPAQLTTTDPLLAKFLSPLLEGTRVSVAASSDKVVNADSDAKTKESPLIAIMDGVYADF 212 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8367.17367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8367.17367.1 >prot_L-elsbetiae_contig8367.17367.1 ID=prot_L-elsbetiae_contig8367.17367.1|Name=mRNA_L-elsbetiae_contig8367.17367.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=365bp MMVNHNEFGITEEEFEEHGNDEGAVQELLLEKMRRFISRHPEAAGDDSIKback to top mRNA from alignment at L-elsbetiae_contig8367:419..7359+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig8367.17367.1 ID=mRNA_L-elsbetiae_contig8367.17367.1|Name=mRNA_L-elsbetiae_contig8367.17367.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6941bp|location=Sequence derived from alignment at L-elsbetiae_contig8367:419..7359+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig8367:419..7359+ >mRNA_L-elsbetiae_contig8367.17367.1 ID=mRNA_L-elsbetiae_contig8367.17367.1|Name=mRNA_L-elsbetiae_contig8367.17367.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2190bp|location=Sequence derived from alignment at L-elsbetiae_contig8367:419..7359+ (Laminarionema elsbetiae ELsaHSoW15)back to top |