mRNA_L-elsbetiae_contig8366.17365.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8366.17365.1
Unique NamemRNA_L-elsbetiae_contig8366.17365.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8366.17365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8366contigL-elsbetiae_contig8366:793..1791 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.2
Seed ortholog evalue1.5e-08
Seed eggNOG ortholog2880.D7FJQ7
Hectar predicted targeting categoryother localisation
EggNOG OGs2BAJG@1,2S0VX@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size562
Cds size456
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8366.17365.1prot_L-elsbetiae_contig8366.17365.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8366 793..1686 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816918.5743704-CDS-L-elsbetiae_contig8366:792..9451622816918.5743704-CDS-L-elsbetiae_contig8366:792..945Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8366 793..945 -
1691683911.760433-CDS-L-elsbetiae_contig8366:792..9451691683911.760433-CDS-L-elsbetiae_contig8366:792..945Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8366 793..945 -
1622816918.5845351-CDS-L-elsbetiae_contig8366:1383..16861622816918.5845351-CDS-L-elsbetiae_contig8366:1383..1686Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8366 1384..1686 -
1691683911.7714744-CDS-L-elsbetiae_contig8366:1383..16861691683911.7714744-CDS-L-elsbetiae_contig8366:1383..1686Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8366 1384..1686 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816918.596428-UTR-L-elsbetiae_contig8366:1686..17911622816918.596428-UTR-L-elsbetiae_contig8366:1686..1791Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8366 1687..1791 -
1691683911.7838848-UTR-L-elsbetiae_contig8366:1686..17911691683911.7838848-UTR-L-elsbetiae_contig8366:1686..1791Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8366 1687..1791 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8366.17365.1

>prot_L-elsbetiae_contig8366.17365.1 ID=prot_L-elsbetiae_contig8366.17365.1|Name=mRNA_L-elsbetiae_contig8366.17365.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=152bp
MTRGGRREGHGTDHPVLLPQRRRPRVASSTQPAPPTDRVSVRDAAAAGGA
CAGWVVAADTGRRVAGQRRSRPARGFGSRPPLAACSLAVLAFLGDRAASF
QPVAVQAPPPRHQQRAARQQSRRQLYAAAEPCRGSCDTPLLQGSFTGRLG
RQ
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mRNA from alignment at L-elsbetiae_contig8366:793..1791-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8366.17365.1 ID=mRNA_L-elsbetiae_contig8366.17365.1|Name=mRNA_L-elsbetiae_contig8366.17365.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=999bp|location=Sequence derived from alignment at L-elsbetiae_contig8366:793..1791- (Laminarionema elsbetiae ELsaHSoW15)
CTTCATTCTTGAGCGCTACAAGCACTCTAGCCTGTCGCCAACACCAGCGA
AGACGGGGCCGCTCTCCCCCCCTGCTGCTGGCAGACGCAGAAGCAAGAGC
AGTTCATGACTCGAGGAGGGAGAAGAGAGGGCCACGGCACAGACCACCCC
GTGCTGCTGCCTCAGCGGCGCCGTCCTCGCGTGGCTTCTTCGACACAGCC
GGCGCCGCCGACGGACAGAGTCTCCGTTCGGGATGCTGCCGCGGCGGGAG
GTGCTTGCGCTGGCTGGGTAGTGGCTGCAGATACAGGGCGACGGGTGGCA
GGTCAGCGGCGCAGCCGGCCGGCTCGAGGCTTCGGTAGCCGGCCGCCTCT
GGCAGCGTGCTCTTTGGCTGTGCTTGCCTTCCTGGGCGATCGAGCCGCGT
CTTTCCAGGTGCGGCGTGGGGGGGGTTGCCCGGCTTGCTGTGCGTGGCAG
AGGAACCTTGGCTGTTGTGGGCGGCTTCCCGGAGCGAGACGGGTTTGCAC
AGCCTCTCTCTCTCTCCTCCTCGCTACTTGGTAGCATATTTGATGGTGGG
CCGCTGATGAGGGCCTAACAGAGTACCACACCAGAGCTGTGTGCGTGGCG
TGTGTTCAGTAACACATGTTGTTGAATTGAACATGAGCGCCCCACGGAGA
ACAGAGTCTGGGCCACCGATTTGCGACAGCTCGCACTCGTTCTCTGCTGC
TGTTTAAAAGCCTTGTGCGTTTTCTCCTCCGGGAGCTCGTGCCGATCGCT
GTGGACAATCGCTGCGCGACGGATGTGTCAACTCACGTTTGTTTTTTTGA
TCTGCTTTTTTTTTGACGCACGAAAAATGAAATAATTTGTACACAGCCTG
TGGCGGTGCAGGCACCACCGCCGCGGCATCAGCAGCGAGCAGCGAGACAG
CAGTCGCGACGGCAGCTGTACGCGGCGGCGGAGCCATGTCGGGGTAGCTG
CGACACCCCACTTCTGCAGGGAAGCTTTACGGGGCGCTTAGGACGACAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8366:793..1791-

>mRNA_L-elsbetiae_contig8366.17365.1 ID=mRNA_L-elsbetiae_contig8366.17365.1|Name=mRNA_L-elsbetiae_contig8366.17365.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=912bp|location=Sequence derived from alignment at L-elsbetiae_contig8366:793..1791- (Laminarionema elsbetiae ELsaHSoW15)
ATGACTCGAGGAGGGAGAAGAGAGGGCCACGGCACAGACCACCCCGTGCT
GCTGCCTCAGCGGCGCCGTCCTCGCGTGGCTTCTTCGACACAGCCGGCGC
CGCCGACGGACAGAGTCTCCGTTCGGGATGCTGCCGCGGCGGGAGGTGCT
TGCGCTGGCTGGGTAGTGGCTGCAGATACAGGGCGACGGGTGGCAGGTCA
GCGGCGCAGCCGGCCGGCTCGAGGCTTCGGTAGCCGGCCGCCTCTGGCAG
CGTGCTCTTTGGCTGTGCTTGCCTTCCTGGGCGATCGAGCCGCGTCTTTC
CAGATGACTCGAGGAGGGAGAAGAGAGGGCCACGGCACAGACCACCCCGT
GCTGCTGCCTCAGCGGCGCCGTCCTCGCGTGGCTTCTTCGACACAGCCGG
CGCCGCCGACGGACAGAGTCTCCGTTCGGGATGCTGCCGCGGCGGGAGGT
GCTTGCGCTGGCTGGGTAGTGGCTGCAGATACAGGGCGACGGGTGGCAGG
TCAGCGGCGCAGCCGGCCGGCTCGAGGCTTCGGTAGCCGGCCGCCTCTGG
CAGCGTGCTCTTTGGCTGTGCTTGCCTTCCTGGGCGATCGAGCCGCGTCT
TTCCAGCCTGTGGCGGTGCAGGCACCACCGCCGCGGCATCAGCAGCGAGC
AGCGAGACAGCAGTCGCGACGGCAGCTGTACGCGGCGGCGGAGCCATGTC
GGGGTAGCTGCGACACCCCACTTCTGCAGGGAAGCTTTACGGGGCGCTTA
GGACGACAGCCTGTGGCGGTGCAGGCACCACCGCCGCGGCATCAGCAGCG
AGCAGCGAGACAGCAGTCGCGACGGCAGCTGTACGCGGCGGCGGAGCCAT
GTCGGGGTAGCTGCGACACCCCACTTCTGCAGGGAAGCTTTACGGGGCGC
TTAGGACGACAG
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