mRNA_L-elsbetiae_contig8364.17364.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-elsbetiae_contig8364.17364.1
Unique Name	mRNA_L-elsbetiae_contig8364.17364.1
Type	mRNA
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)

Homology

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BLAST of mRNA_L-elsbetiae_contig8364.17364.1 vs. uniprot
Match: D7G7F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F9_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 3.750e-17
Identity = 40/56 (71.43%), Postives = 45/56 (80.36%), Query Frame = 1

Query:  139 MTSEGNSRCADAFAIALNQACGGGEKRWYTSTLELQLASLELCRACRRVPILVVRV 306
            M +EG +R  DAFAIAL+QAC GGEKRWYTST ELQL SL++CRACR  P L VRV
Sbjct:    1 MPTEGYTRSFDAFAIALSQACEGGEKRWYTSTTELQLGSLDICRACRSTPTLHVRV 56

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BLAST of mRNA_L-elsbetiae_contig8364.17364.1 vs. uniprot
Match: A0A6H5KNI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 3.890e-17
Identity = 41/56 (73.21%), Postives = 46/56 (82.14%), Query Frame = 1

Query:  139 MTSEGNSRCADAFAIALNQACGGGEKRWYTSTLELQLASLELCRACRRVPILVVRV 306
            MT++GNS+C DAF +ALNQAC G EKRWY STLELQL SLE+C ACRRV  L VRV
Sbjct:    1 MTTKGNSKCLDAFVVALNQACDGQEKRWYVSTLELQLVSLEVCGACRRVQTLHVRV 56

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BLAST of mRNA_L-elsbetiae_contig8364.17364.1 vs. uniprot
Match: D7G0Z9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z9_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 1.110e-15
Identity = 42/74 (56.76%), Postives = 48/74 (64.86%), Query Frame = 1

Query:   85 LLSMYIEPEVGKTSEGSTMTSEGNSRCADAFAIALNQACGGGEKRWYTSTLELQLASLELCRACRRVPILVVRV 306
            L S   E ++G+  +   MT    S+C DAF +ALNQ C G EKRWY STLELQL SLE C ACR VP L VRV
Sbjct:   20 LASKLTEEQLGQVKQ---MTRR--SKCLDAFVVALNQTCDGQEKRWYASTLELQLVSLEFCGACRHVPTLHVRV 88

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BLAST of mRNA_L-elsbetiae_contig8364.17364.1 vs. uniprot
Match: A0A6H5LIJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIJ3_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.940e-14
Identity = 38/53 (71.70%), Postives = 41/53 (77.36%), Query Frame = 1

Query:  148 EGNSRCADAFAIALNQACGGGEKRWYTSTLELQLASLELCRACRRVPILVVRV 306
            E  +RC DAF IAL+QAC GGEKRWY STLELQL SL+LCRACR   IL V V
Sbjct:    6 EWRTRCLDAFVIALSQACEGGEKRWYASTLELQLTSLDLCRACRTTSILHVHV 58

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BLAST of mRNA_L-elsbetiae_contig8364.17364.1 vs. uniprot
Match: A0A6H5L1V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V9_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 3.260e-14
Identity = 36/52 (69.23%), Postives = 40/52 (76.92%), Query Frame = 1

Query:  139 MTSEGNSRCADAFAIALNQACGGGEKRWYTSTLELQLASLELCRACRRVPIL 294
            MTSE   RC DAF +AL+Q   GGEKRWYTSTL+LQLASLE C ACR  P+L
Sbjct:    1 MTSEAQRRCLDAFVVALSQCYEGGEKRWYTSTLQLQLASLEFCGACRSTPML 52

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BLAST of mRNA_L-elsbetiae_contig8364.17364.1 vs. uniprot
Match: A0A6H5KLV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV1_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 5.470e-14
Identity = 37/52 (71.15%), Postives = 38/52 (73.08%), Query Frame = 1

Query:  151 GNSRCADAFAIALNQACGGGEKRWYTSTLELQLASLELCRACRRVPILVVRV 306
            G S C  AF +ALNQ C G EKRWY STLELQL SLE C ACRRVP L VRV
Sbjct:   13 GRSECLRAFIVALNQTCNGQEKRWYASTLELQLVSLEFCGACRRVPTLHVRV 64

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BLAST of mRNA_L-elsbetiae_contig8364.17364.1 vs. uniprot
Match: A0A6H5KXX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXX4_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.090e-12
Identity = 39/56 (69.64%), Postives = 43/56 (76.79%), Query Frame = 1

Query:  139 MTSEGNSRCADAFAIALNQACGGGEKRWYTSTLELQLASLELCRACRRVPILVVRV 306
            M SEG SR  DA  IA++QA  G  KRWYTSTLEL+LASLE CRACRRVP + VRV
Sbjct:    1 MDSEGASRGFDALIIAISQAYEGRGKRWYTSTLELRLASLETCRACRRVPTIHVRV 56

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BLAST of mRNA_L-elsbetiae_contig8364.17364.1 vs. uniprot
Match: A0A6H5K2L2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2L2_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.600e-12
Identity = 31/46 (67.39%), Postives = 34/46 (73.91%), Query Frame = 1

Query:  151 GNSRCADAFAIALNQACGGGEKRWYTSTLELQLASLELCRACRRVP 288
            G   C DAF +ALN+ C GGE+RWY STLELQ  SLE C ACRRVP
Sbjct:   15 GRGECVDAFIVALNRTCDGGEQRWYASTLELQPVSLEFCVACRRVP 60

[Close]

BLAST of mRNA_L-elsbetiae_contig8364.17364.1 vs. uniprot
Match: A0A6H5KVM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVM8_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 4.080e-11
Identity = 33/52 (63.46%), Postives = 39/52 (75.00%), Query Frame = 1

Query:  151 GNSRCADAFAIALNQACGGGEKRWYTSTLELQLASLELCRACRRVPILVVRV 306
            G ++C DAF +AL+QAC GG KR YTSTLEL LASL++CRA R    L VRV
Sbjct:   18 GPTQCFDAFVVALSQACEGGNKRSYTSTLELPLASLDICRAGRSTSTLHVRV 69

[Close]

BLAST of mRNA_L-elsbetiae_contig8364.17364.1 vs. uniprot
Match: D7FTK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK8_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 1.220e-10
Identity = 31/49 (63.27%), Postives = 33/49 (67.35%), Query Frame = 1

Query:  148 EGNSRCADAFAIALNQACGGGEKRWYTSTLELQLASLELCRACRRVPIL 294
            EG     D   +ALNQAC G EKRWY STLELQL SLELC ACR   +L
Sbjct:   84 EGGGSSLDTLIVALNQACDGQEKRWYVSTLELQLVSLELCGACRSAQLL 132

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig8364.17364.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig8364.17364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G7F9_ECTSI	3.750e-17	71.43	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KNI6_9PHAE	3.890e-17	73.21	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G0Z9_ECTSI	1.110e-15	56.76	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5LIJ3_9PHAE	1.940e-14	71.70	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L1V9_9PHAE	3.260e-14	69.23	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KLV1_9PHAE	5.470e-14	71.15	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KXX4_9PHAE	1.090e-12	69.64	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K2L2_9PHAE	1.600e-12	67.39	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KVM8_9PHAE	4.080e-11	63.46	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FTK8_ECTSI	1.220e-10	63.27	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig8364	contig	L-elsbetiae_contig8364:4941..8556 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-19_004420.1
Exons	2
Model size	306
Cds size	306
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816918.5314255-CDS-L-elsbetiae_contig8364:4940..5095	1622816918.5314255-CDS-L-elsbetiae_contig8364:4940..5095	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig8364 4941..5095 -
1691683911.7358468-CDS-L-elsbetiae_contig8364:4940..5095	1691683911.7358468-CDS-L-elsbetiae_contig8364:4940..5095	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig8364 4941..5095 -
1622816918.5439637-CDS-L-elsbetiae_contig8364:8405..8556	1622816918.5439637-CDS-L-elsbetiae_contig8364:8405..8556	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig8364 8406..8556 -
1691683911.7491663-CDS-L-elsbetiae_contig8364:8405..8556	1691683911.7491663-CDS-L-elsbetiae_contig8364:8405..8556	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig8364 8406..8556 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig8364.17364.1	prot_L-elsbetiae_contig8364.17364.1	Laminarionema elsbetiae ELsaHSoW15	polypeptide	L-elsbetiae_contig8364 4941..8556 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-elsbetiae_contig8364:4941..8556-
coding sequence from alignment at L-elsbetiae_contig8364:4941..8556-

protein sequence of mRNA_L-elsbetiae_contig8364.17364.1

>prot_L-elsbetiae_contig8364.17364.1 ID=prot_L-elsbetiae_contig8364.17364.1|Name=mRNA_L-elsbetiae_contig8364.17364.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
EEARKAEVLPCAACSKERLEGSRTLVTGLLSMYIEPEVGKTSEGSTMTSE
GNSRCADAFAIALNQACGGGEKRWYTSTLELQLASLELCRACRRVPILVV
RV

mRNA from alignment at L-elsbetiae_contig8364:4941..8556-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-elsbetiae_contig8364.17364.1 ID=mRNA_L-elsbetiae_contig8364.17364.1|Name=mRNA_L-elsbetiae_contig8364.17364.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3616bp|location=Sequence derived from alignment at L-elsbetiae_contig8364:4941..8556- (Laminarionema elsbetiae ELsaHSoW15)
GAGGAAGCTAGGAAAGCCGAGGTATTACCGTGTGCTGCTTGTTCGAAAGA
GAGGTTGGAGGGGAGCCGCACATTGGTAACCGGTCTCTTGAGCATGTACA
TCGAGCCGGAGGTGGGAAAAACGTCGGAGGGGAGTACCATGACCTCTGAA
GGTAAGAAGAGAGCCAGTCAAGGGCGGTGCTTTCTAGGGGAGGAGTTGGC
TTGAAATAGTCGATTCCCACGCTTGTGCGATTCTGCATACGCGGTTTGTC
TGGCGGCGACAGCAGTGATTCGATGTACTAAATAAACAGCAATCGCTAGG
TACATATCTAGACTGCCCCGTGGTTTATGCGGTGTAACCTCACCGGTCGC
CCCGGGGTCTGGTCTAGTGGTAACTTCGAGACCCGCTAAATAGTAGCAAA
GGCCGTGAGTTCGAATTCCTCTGGGGTGAAGAATTTGCAAATTTGCAGTC
GAAAGCAGGGATGGTAGTTACGCGTAACGGGTAATTACGCGTAATGAGAT
TGGGAGAGGGGCCCCGCAGCATTTTATGCCGCGGCGGAATATAACGTTTT
TGGCGCCCCCTTGAGAAACAATTCAAAACCACTTGGACACATACTAGCAG
AGCAGCTGGCATACAAATACCACGATAACTCCGCCATCGCAGATTAAGAC
AACGATGTCTTCGATACATCCTGTGTGTGTGTGTGTCCTTCCCATTTATT
TTGGCGACAGTCCCCCCAAGTGGAGACGTGTACTATACGTTGCGGTGTAC
TTAGAGGCACTGCACCTTGCAGTGCATTTGTCTGTACAACTAGAACCAAC
CGGGGTCACACAGGAGGAGGTGAACACTGGGGCTTTTTTCTTCTTTTTTC
TTTTCTTTTTTTGCCCCACCTTCCTCCTGCGGTTCTTGCCTCGGGTTTTA
TCGCGAGAAGGGTTCAGCTGTCCCTTTCCCTTGTCAACGTGATTGCGTCG
AAGTTTGGTACTCACGAGCTTTTCAGCTTTTATCGCTTAGCTAAGATAAC
AGAGATGCTAATGGTCAAACTTCCGCTCGTAGAAGACGCTTGTCCCCGAA
ATATCAGAGTGCCCAACGACATCGCCTGGCGAGAGAGAGAACAGGACTGT
GAAAAAAGAGAGCCAGCACAACGCGGGGCATCGGTGAATCTCCCAGCCCA
CACATTCAACAAGTCACAAGAGGGTTTGCAGCATCGCGAATTTCTCGGCC
GGTAGATGTTAAGCCCTGGATATTCTTGGGGCTTTGGATAGCCAAGAAGA
TTAGCTATCTTGCTGACCCAAGGGCCGGGCGCGATGATAGCTTGTCCCCG
AAGTCGCTCCCTCCGCACCAACCAAGCTTTCGACGGGAGCCTTTTTTATT
TATCACAGCTGGAACGCGCACCCACAAGTCAGACAACCGACAACAAAAAA
TCCTAGCAGTGCTACTTTGTGTAGCCAACAACATATCGTGCTTTACAGGC
TGCATAGGTGAGGTGGTGGACTGGCAAAACGTAACAAACTTTTACGGGGC
TGACAGGTGTTGGGCCCCGCCTACCTGAAATGCCTCCGTATCTCCCGCCT
ATATCCCAAACGCTATTTTTCCTCCCCGGCCGACACAACCGCCCTCCGAC
CGGAGTTTTTCGGCTTGGGGTACTCTACCAACACCACACAGTTCTATTCT
CACCTCTACAAACAGAAACGGGGGCCTATTGCCGTAGCTTTGTCGAAAAA
AGACGGCGCGGAGAAAGTGCGGCGGAACCGTCGCCAACAACACTGGCAGG
TAAATCCGCCGCAATGTAACTGGGTTTTTCCAGGTGACGGTGCCCCCCAT
ACCCCCACGTCCTTTTACGTTTTTGCTTTGTTCTTTCATTGTTTCAAGAA
ACTGAAACTAAAAACCAAAAACTCTGTGTTCTCTCTGTTGAAGCTCCGCA
CTCTTACTATTGTACTCACCCGCCCCCGAGCAGACATTCATTGTTGGCTC
TTTTGCTGCTATGCACGAGATAGACGCAGCCTTAATGGCCATGGGACAAC
CCCCGAGACCCTGCATGGGCTTGGTAGGTCTGCACGTTGAAGTCCGGTAC
AACATAGACATGCCCTGCTTTTGCCGTCTGGCCACAAGGTGTACCTTGTT
TTGCCGTTGCCCGAAAAAAAAGGCCCCGCGCCCACTCTATGAGGGCCGCG
CTGGGGGCAGAGTCGAAAATGAGATGACGGCAGGCAACATGTTGCCGAAA
AAGAGAAGGCCAATAGCGGAAACCCTGGAGTAGACGCAAACACGCGCTAT
TATACTTCAAAATCGACTCCCGAAGGCCAACAACCCAGACGAAACCGAGG
GTGACGATGCGATTACACATGAAGAGAAGCGTGAGGCCCGGAAAAACACG
CACGGAAATGCAACGAAACTCCTGCCCCGCCAGAACACAAACATGTGAAT
AGAAACATGCGGCATGATGATGGGTCTTCTGCAGAGGCCCCGGAAGGCGC
TGCTTGTGCTGTGGGGCAGAGATATGTAGCGGCGAAGATCCCGACACAGA
GCAGAAAGCGCCAATAGTAGGTAGGCCCTATATACGGAAATTCAAAAAAT
ACAGACTGACAAGATTAGCGCGTACAAGCGAAGCAGAGATATATGTCAAC
GAAGCTCGCAAGTGATACACGGAAAAACTAGGGCGTTTAAAAGTCCACGC
GAAAGCAATGCACGTAAAGCAGCTTGAACGCAGGAATCGGCCGGTGTGGT
TTGCAGACAATCCGAGAATTATTCCAGTGTGTGCGAAGAGTACGCGTGGG
ACCCACCGGAATCGCGAACTAGGTGTAGAGACAGGCGATGGCATCCATTG
TCTGTTGTCCACGTGCATGTTGGTACGAACGCTGTTCATAAAAATAGGTG
CTGGTGCGGCACTACTTGTCTGATCCTGTTTCCTTTACGGAGAGACGTGC
ATGTCGGATGTTGCACTGTTGTACACACCACACATGTACGACTGCTGTCT
GCGTTTGCGTGAGTTGCCCAGTCCGCGGATTTGCAAACACGGCACGCTTT
TGCATTTGGTGTGCGACGGATACGATGCGTGTTTTCCTTGGCGTAAACCA
CGATCGATGCCATATACACACAGCGAAGCTGCGTGTTTTATGTAGAGCAT
AGTCGGTCATGATGCAGCTGTACGCGCGTGCATACCGTCATTGTATGTTT
ATCGAGAGATGTGCACGTGACATCACAGGCCTCCATTCGCACAAATGTTC
TAGTGTAGGTATCTACAACTGGTCCACTTCGTTTTCGCGGCGAGGTGGAC
TGCCACCGGGTGAGGTGAATTTCAAACAAATACTGGTATGTGCGGGTAGA
ACCAAAAACCAAATTCATGCTCATAGTATTGCCTAGTAGTGCGATATAAG
ACGACGTTTCGGTGGAGAACTTGTTAGATTGATGATACCCATGTCAACTT
GCTTCTATGTTGCGTGATTTCGCTCATGCTTGGTCGTGCGCTCTACCACA
CCTATTTCCAGGCAACAGCCGATGCGCTGACGCTTTCGCTATCGCCTTGA
ACCAAGCATGCGGAGGAGGGGAGAAGCGTTGGTACACGTCTACGCTGGAG
CTACAGCTAGCGTCGCTGGAGCTCTGCAGGGCATGCAGGAGGGTCCCGAT
CTTGGTTGTGCGCGTC

Coding sequence (CDS) from alignment at L-elsbetiae_contig8364:4941..8556-

>mRNA_L-elsbetiae_contig8364.17364.1 ID=mRNA_L-elsbetiae_contig8364.17364.1|Name=mRNA_L-elsbetiae_contig8364.17364.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig8364:4941..8556- (Laminarionema elsbetiae ELsaHSoW15)
GAGGAAGCTAGGAAAGCCGAGGTATTACCGTGTGCTGCTTGTTCGAAAGA
GAGGTTGGAGGGGAGCCGCACATTGGTAACCGGTCTCTTGAGCATGTACA
TCGAGCCGGAGGTGGGAAAAACGTCGGAGGGGAGTACCATGACCTCTGAA
GGAGGAAGCTAGGAAAGCCGAGGTATTACCGTGTGCTGCTTGTTCGAAAG
AGAGGTTGGAGGGGAGCCGCACATTGGTAACCGGTCTCTTGAGCATGTAC
ATCGAGCCGGAGGTGGGAAAAACGTCGGAGGGGAGTACCATGACCTCTGA
AGGCAACAGCCGATGCGCTGACGCTTTCGCTATCGCCTTGAACCAAGCAT
GCGGAGGAGGGGAGAAGCGTTGGTACACGTCTACGCTGGAGCTACAGCTA
GCGTCGCTGGAGCTCTGCAGGGCATGCAGGAGGGTCCCGATCTTGGTTGT
GCGCGTCGCAACAGCCGATGCGCTGACGCTTTCGCTATCGCCTTGAACCA
AGCATGCGGAGGAGGGGAGAAGCGTTGGTACACGTCTACGCTGGAGCTAC
AGCTAGCGTCGCTGGAGCTCTGCAGGGCATGCAGGAGGGTCCCGATCTTG
GTTGTGCGCGTC