mRNA_L-elsbetiae_contig836.17362.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig836.17362.1
Unique NamemRNA_L-elsbetiae_contig836.17362.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig836.17362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig836contigL-elsbetiae_contig836:21870..24146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size428
Cds size426
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig836.17362.1prot_L-elsbetiae_contig836.17362.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig836 21870..24145 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816917.8360543-CDS-L-elsbetiae_contig836:21869..220201622816917.8360543-CDS-L-elsbetiae_contig836:21869..22020Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig836 21870..22020 +
1691683911.139518-CDS-L-elsbetiae_contig836:21869..220201691683911.139518-CDS-L-elsbetiae_contig836:21869..22020Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig836 21870..22020 +
1622816917.8503888-CDS-L-elsbetiae_contig836:23364..235301622816917.8503888-CDS-L-elsbetiae_contig836:23364..23530Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig836 23365..23530 +
1691683911.1518376-CDS-L-elsbetiae_contig836:23364..235301691683911.1518376-CDS-L-elsbetiae_contig836:23364..23530Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig836 23365..23530 +
1622816917.8652432-CDS-L-elsbetiae_contig836:24036..241451622816917.8652432-CDS-L-elsbetiae_contig836:24036..24145Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig836 24037..24145 +
1691683911.1625113-CDS-L-elsbetiae_contig836:24036..241451691683911.1625113-CDS-L-elsbetiae_contig836:24036..24145Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig836 24037..24145 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig836.17362.1

>prot_L-elsbetiae_contig836.17362.1 ID=prot_L-elsbetiae_contig836.17362.1|Name=mRNA_L-elsbetiae_contig836.17362.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=142bp
GRRGVLQICLRLAGKDECVVCSPGISAELAGMLGCWMSSADRKTATSQLD
RWSVEWNGGNKRFGHERLVTISGRNVRSGVECLAEPHWREFRPSHGDLRC
REAFRRWVYPSTTATSTQPMVSLFRLGTASSSSSNACHRPTA
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mRNA from alignment at L-elsbetiae_contig836:21870..24146+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig836.17362.1 ID=mRNA_L-elsbetiae_contig836.17362.1|Name=mRNA_L-elsbetiae_contig836.17362.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2277bp|location=Sequence derived from alignment at L-elsbetiae_contig836:21870..24146+ (Laminarionema elsbetiae ELsaHSoW15)
GGACGGCGTGGAGTGCTCCAGATATGCCTCAGATTGGCGGGGAAGGATGA
ATGTGTGGTGTGCTCACCTGGAATTAGCGCGGAGCTGGCCGGCATGCTTG
GTTGTTGGATGTCTTCCGCTGATCGCAAAACAGCTACATCACAGCTAGAT
AGTCTACATAGTCTACCCCGGTACACCTTTCATCGCATTCCATTCAGCAG
CCAATCGCGGGCAATGAAGCTTTGGCGAAGACACGAGCAATAATCCGTTG
GAAGTGCTGCTGCAGGTTGTGCGTTGCTTGTTTGGGTGGGCTTTGCAATT
TAAAGAGTCTGATGCTGTGTCCGCCGTTATGATGTCTGTCCAACGGGCTT
TGCACGACGACGGTAGATGCCTGTCTGTCCAACAGCACCTCCGCCATGCA
ACATGCAATAATGGGGAGACGCTGCGTGACCCCCTACATGAAACCCGAGC
TGTACATAGATATGTATTAGTTCAAATGCGTTCTAGACAGAAAAATAGTT
TTTGTGTTTTGTGTTGCTCACTGCTGGTACTCTGTACGCCCTCCGCCTAC
ATCCACTCCACACCCACACGTGCTTGATGGCCCGCCAATGCTACAGAGGA
GTGAGCAGTTCGAAGCATTAGGCACACTCGTCCTTAGAGGACGGTAGGAA
AAATCAATCCCTACAGCAGTAACACACCGCCTGTGCGAGCCGTGGCAGGA
TGGAGTCTTGCTGTACGACCTTTATGTTCTTCTTGCCAGCCGTACCTCCC
GTTTGTTGACGGATGGGGTCTGCGTAAAGACAAACGCGGTAAGTGGTGCG
ATGGCACTAAGGCTGGGTGCGATGACACCGAGGCTGGGTGTTTGACAAGA
AAAGTATCAACTTACCCGCGACAAATGTTCATGTTCCTCGATGGTACGCA
CGCACCGCCTGTGTTGGACTCTTACCTGTTGCGGAGAGAGTCGTTTCGTG
CCATCGCTCATTTGGGCGTACACCTCTGCTGTTTGTTGCCGCTGTCTTGC
ATTTTGAACACGTGGTGTCCCTGTGGTTGGTATCTCTGTTTACATATGGA
GATTAAATTGGAGTAGAGAGACTACCGCGCGGCTGGTTGAAAGGCGGCGT
GATGGTCGTAAGCAACGGTTACACCAACACCAAACGCCCTCGCATGCTTC
GAATATTCGCACCAGGTTTGCCGCTGTTGTGTGCGAGCCAACATTCAACC
AAAAACCACCAACATCAGATGCGGTTTGGACATAGTCTGAAATAAGCACC
AACGAACTTTGGCCGTAGCCCAAGGGGGTATCGGGCACGTGCCTGGGGCT
GAGGGCCGGGTTGAGGGGGCCGAGGCTGCTGCTGGAGCATGTTCCAACGT
GATGCACAACTGCTTGACACGTTTATCATCAGTGTCGCACCACACCAGGA
CACACCACGACGCAGTTCTTCTCCTTTGCATGTATTGTAGGGGGAGATGG
CCTTTGCTGAAGCTTCACTGTTTTTCCCTGCACCCTTTTCCTTAGGATGG
TCTGTGGAATGGAACGGCGGGAACAAGCGGTTCGGGCACGAGCGCTTGGT
GACAATCAGCGGACGCAACGTACGTAGTGGAGTGGAGTGCCTGGCCGAAC
CTCACTGGCGTGAATTTCGACCTTCTCACGGAGACCTGCGTTGTCGTGAA
GCTTTCCGAAGGTGACTTGGGTTTAAAACGGCATGTTCATAACCCGTTGG
GGGGTAAGGCACACTCGCTATATTGTGGCGTGCTGTTCCCTGAGGGTGTT
CGTTTTTCTTTTCTTTTTTCAAAGACGAAGGAGGCAGTGGAAGAAGGCTT
GATAGCAGTGAGGATAGAATGTGTATGCATCTGTGGTAGGAAAACACATC
GGCAGCGCGCGGCGTGGTGAGCTGGATGTGGAGCGGCGAGCAGGCGTTGT
TGGGAAGGCACACGCTTAATGGGGCGTGGTTGTTGGGGGAAAATATATGT
ATGCCGTCTAAGACGTGGTGGGCGCATGTACTATCTTGGTTTGGTTTGAC
GCCATATTCTAAACAGTTGGGTTTGAAACGGCTTGGGCTTGTTCATAACC
AATGGTAAGGTATCGCGGAATCTCGCCCATTTCTTCTTCCTCTTTCGTGT
TGATATCGAAACCTCGACACCGTTTCCTCCCTTTTCTCCTGCTGGCCGTT
TGCACGTTCAAACGAAGGTGGGTCTACCCCAGTACGACTGCAACAAGTAC
CCAGCCGATGGTTTCCCTTTTCCGCCTCGGCACAGCCAGCAGCAGCAGCA
GCAACGCCTGTCATCGACCGACCGCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig836:21870..24146+

>mRNA_L-elsbetiae_contig836.17362.1 ID=mRNA_L-elsbetiae_contig836.17362.1|Name=mRNA_L-elsbetiae_contig836.17362.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=852bp|location=Sequence derived from alignment at L-elsbetiae_contig836:21870..24146+ (Laminarionema elsbetiae ELsaHSoW15)
GGACGGCGTGGAGTGCTCCAGATATGCCTCAGATTGGCGGGGAAGGATGA
ATGTGTGGTGTGCTCACCTGGAATTAGCGCGGAGCTGGCCGGCATGCTTG
GTTGTTGGATGTCTTCCGCTGATCGCAAAACAGCTACATCACAGCTAGAT
AGGACGGCGTGGAGTGCTCCAGATATGCCTCAGATTGGCGGGGAAGGATG
AATGTGTGGTGTGCTCACCTGGAATTAGCGCGGAGCTGGCCGGCATGCTT
GGTTGTTGGATGTCTTCCGCTGATCGCAAAACAGCTACATCACAGCTAGA
TAGATGGTCTGTGGAATGGAACGGCGGGAACAAGCGGTTCGGGCACGAGC
GCTTGGTGACAATCAGCGGACGCAACGTACGTAGTGGAGTGGAGTGCCTG
GCCGAACCTCACTGGCGTGAATTTCGACCTTCTCACGGAGACCTGCGTTG
TCGTGAAGCTTTCCGAAGGATGGTCTGTGGAATGGAACGGCGGGAACAAG
CGGTTCGGGCACGAGCGCTTGGTGACAATCAGCGGACGCAACGTACGTAG
TGGAGTGGAGTGCCTGGCCGAACCTCACTGGCGTGAATTTCGACCTTCTC
ACGGAGACCTGCGTTGTCGTGAAGCTTTCCGAAGGTGGGTCTACCCCAGT
ACGACTGCAACAAGTACCCAGCCGATGGTTTCCCTTTTCCGCCTCGGCAC
AGCCAGCAGCAGCAGCAGCAACGCCTGTCATCGACCGACCGCGGTGGGTC
TACCCCAGTACGACTGCAACAAGTACCCAGCCGATGGTTTCCCTTTTCCG
CCTCGGCACAGCCAGCAGCAGCAGCAGCAACGCCTGTCATCGACCGACCG
CG
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