mRNA_L-elsbetiae_contig8354.17358.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8354.17358.1
Unique NamemRNA_L-elsbetiae_contig8354.17358.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8354.17358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8354contigL-elsbetiae_contig8354:735..1540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size807
Cds size669
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816917.6942148-CDS-L-elsbetiae_contig8354:734..14031622816917.6942148-CDS-L-elsbetiae_contig8354:734..1403Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8354 735..1403 +
1691683911.0468113-CDS-L-elsbetiae_contig8354:734..14031691683911.0468113-CDS-L-elsbetiae_contig8354:734..1403Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8354 735..1403 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816917.7053306-UTR-L-elsbetiae_contig8354:1403..15401622816917.7053306-UTR-L-elsbetiae_contig8354:1403..1540Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8354 1404..1540 +
1691683911.061706-UTR-L-elsbetiae_contig8354:1403..15401691683911.061706-UTR-L-elsbetiae_contig8354:1403..1540Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8354 1404..1540 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8354.17358.1prot_L-elsbetiae_contig8354.17358.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8354 735..1403 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8354.17358.1

>prot_L-elsbetiae_contig8354.17358.1 ID=prot_L-elsbetiae_contig8354.17358.1|Name=mRNA_L-elsbetiae_contig8354.17358.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=223bp
SSSSSLDAAAAAGLPLPRPFFFALRAVTAISERLLGLLESFPRRPLAAAA
DPAGVSSPLLLLLSPLLSSVPLLSAVTPDFAAVVLRLFEPLLPLPPPRDF
SGEGKIERALPLFAPEDSAADVLAPLRFAVPVGASVAPDFEFPAGRSLRL
SAAAAATAAFRGVAALSSKPTNSPCACTDGEMWWCCCFFFVFPGADGLLL
PPFGLPLFLWGSVMALKKKSCI*
back to top

mRNA from alignment at L-elsbetiae_contig8354:735..1540+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8354.17358.1 ID=mRNA_L-elsbetiae_contig8354.17358.1|Name=mRNA_L-elsbetiae_contig8354.17358.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=806bp|location=Sequence derived from alignment at L-elsbetiae_contig8354:735..1540+ (Laminarionema elsbetiae ELsaHSoW15)
TCCTCCTCCTCCTCGCTGGATGCTGCTGCCGCAGCAGGTCTACCCCTTCC
ACGGCCTTTCTTTTTCGCACTGAGGGCTGTGACGGCGATATCCGAGCGCC
TGCTGGGCTTGCTCGAGAGCTTTCCCCGCCGCCCCCTCGCTGCCGCTGCG
GATCCAGCTGGCGTCTCGTCGCCGCTACTGCTGCTGTTGTCGCCGTTGCT
GTCTTCGGTGCCGCTGCTCTCTGCCGTTACTCCCGATTTTGCAGCAGTCG
TCTTGCGCCTTTTCGAGCCGTTGCTGCCGCTCCCGCCGCCTCGAGATTTC
TCCGGCGAGGGAAAGATCGAGCGAGCCCTGCCTCTCTTCGCCCCGGAAGA
CTCGGCAGCTGACGTCTTGGCACCTTTGCGCTTCGCCGTCCCGGTGGGTG
CTTCTGTTGCCCCCGATTTCGAATTTCCGGCGGGTCGTTCGCTCAGGCTG
AGTGCCGCCGCAGCAGCCACCGCCGCTTTTCGCGGGGTCGCTGCCTTGTC
GTCAAAGCCCACCAACAGCCCCTGTGCCTGCACGGATGGCGAAATGTGGT
GGTGTTGCTGCTTCTTCTTCGTCTTCCCTGGCGCGGACGGCTTGTTGCTG
CCCCCCTTCGGCCTTCCCCTTTTTCTCTGGGGATCCGTCATGGCTCTCAA
GAAGAAGTCGTGTATATAGCAGGTAGAAACCTCTTACCTCTGTCAGCGCA
ACCAGACAATCACGCAGAGAGGCACCGATCGGAGGGAGATTGACGTGATT
GCCCAAGTTGCGCGTGGTGGTCCCCCCTCTCTCCGTGTCTCGCCCGTGGG
TTGTCG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig8354:735..1540+

>mRNA_L-elsbetiae_contig8354.17358.1 ID=mRNA_L-elsbetiae_contig8354.17358.1|Name=mRNA_L-elsbetiae_contig8354.17358.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1338bp|location=Sequence derived from alignment at L-elsbetiae_contig8354:735..1540+ (Laminarionema elsbetiae ELsaHSoW15)
TCCTCCTCCTCCTCGCTGGATGCTGCTGCCGCAGCAGGTCTACCCCTTCC
ACGGCCTTTCTTTTTCGCACTGAGGGCTGTGACGGCGATATCCGAGCGCC
TGCTGGGCTTGCTCGAGAGCTTTCCCCGCCGCCCCCTCGCTGCCGCTGCG
GATCCAGCTGGCGTCTCGTCGCCGCTACTGCTGCTGTTGTCGCCGTTGCT
GTCTTCGGTGCCGCTGCTCTCTGCCGTTACTCCCGATTTTGCAGCAGTCG
TCTTGCGCCTTTTCGAGCCGTTGCTGCCGCTCCCGCCGCCTCGAGATTTC
TCCGGCGAGGGAAAGATCGAGCGAGCCCTGCCTCTCTTCGCCCCGGAAGA
CTCGGCAGCTGACGTCTTGGCACCTTTGCGCTTCGCCGTCCCGGTGGGTG
CTTCTGTTGCCCCCGATTTCGAATTTCCGGCGGGTCGTTCGCTCAGGCTG
AGTGCCGCCGCAGCAGCCACCGCCGCTTTTCGCGGGGTCGCTGCCTTGTC
GTCAAAGCCCACCAACAGCCCCTGTGCCTGCACGGATGGCGAAATGTGGT
GGTGTTGCTGCTTCTTCTTCGTCTTCCCTGGCGCGGACGGCTTGTTGCTG
CCCCCCTTCGGCCTTCCCCTTTTTCTCTGGGGATCCGTCATGGCTCTCAA
GAAGAAGTCGTGTATATAGTCCTCCTCCTCCTCGCTGGATGCTGCTGCCG
CAGCAGGTCTACCCCTTCCACGGCCTTTCTTTTTCGCACTGAGGGCTGTG
ACGGCGATATCCGAGCGCCTGCTGGGCTTGCTCGAGAGCTTTCCCCGCCG
CCCCCTCGCTGCCGCTGCGGATCCAGCTGGCGTCTCGTCGCCGCTACTGC
TGCTGTTGTCGCCGTTGCTGTCTTCGGTGCCGCTGCTCTCTGCCGTTACT
CCCGATTTTGCAGCAGTCGTCTTGCGCCTTTTCGAGCCGTTGCTGCCGCT
CCCGCCGCCTCGAGATTTCTCCGGCGAGGGAAAGATCGAGCGAGCCCTGC
CTCTCTTCGCCCCGGAAGACTCGGCAGCTGACGTCTTGGCACCTTTGCGC
TTCGCCGTCCCGGTGGGTGCTTCTGTTGCCCCCGATTTCGAATTTCCGGC
GGGTCGTTCGCTCAGGCTGAGTGCCGCCGCAGCAGCCACCGCCGCTTTTC
GCGGGGTCGCTGCCTTGTCGTCAAAGCCCACCAACAGCCCCTGTGCCTGC
ACGGATGGCGAAATGTGGTGGTGTTGCTGCTTCTTCTTCGTCTTCCCTGG
CGCGGACGGCTTGTTGCTGCCCCCCTTCGGCCTTCCCCTTTTTCTCTGGG
GATCCGTCATGGCTCTCAAGAAGAAGTCGTGTATATAG
back to top