mRNA_L-elsbetiae_contig835.17353.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig835.17353.1
Unique NamemRNA_L-elsbetiae_contig835.17353.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig835.17353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig835contigL-elsbetiae_contig835:18325..19016 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size692
Cds size405
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig835.17353.1prot_L-elsbetiae_contig835.17353.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig835 18600..19004 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816917.3257384-UTR-L-elsbetiae_contig835:18324..185991622816917.3257384-UTR-L-elsbetiae_contig835:18324..18599Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig835 18325..18599 +
1691683910.799401-UTR-L-elsbetiae_contig835:18324..185991691683910.799401-UTR-L-elsbetiae_contig835:18324..18599Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig835 18325..18599 +
1622816917.3492334-UTR-L-elsbetiae_contig835:19004..190161622816917.3492334-UTR-L-elsbetiae_contig835:19004..19016Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig835 19005..19016 +
1691683910.819887-UTR-L-elsbetiae_contig835:19004..190161691683910.819887-UTR-L-elsbetiae_contig835:19004..19016Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig835 19005..19016 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816917.3380826-CDS-L-elsbetiae_contig835:18599..190041622816917.3380826-CDS-L-elsbetiae_contig835:18599..19004Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig835 18600..19004 +
1691683910.8100164-CDS-L-elsbetiae_contig835:18599..190041691683910.8100164-CDS-L-elsbetiae_contig835:18599..19004Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig835 18600..19004 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig835.17353.1

>prot_L-elsbetiae_contig835.17353.1 ID=prot_L-elsbetiae_contig835.17353.1|Name=mRNA_L-elsbetiae_contig835.17353.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=135bp
MVASQGHTPAPQRMRVARIIYSWVSELSIPAKRYLVRDTPGLKLRWNRPK
TSATQHPNATARPGEDGSADFNANRLLHDSLRFPPTRVRVLVHIQTPRFD
ACNDVTVAATAAINPFLICCTRHCPASQLWCPPR*
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mRNA from alignment at L-elsbetiae_contig835:18325..19016+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig835.17353.1 ID=mRNA_L-elsbetiae_contig835.17353.1|Name=mRNA_L-elsbetiae_contig835.17353.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=692bp|location=Sequence derived from alignment at L-elsbetiae_contig835:18325..19016+ (Laminarionema elsbetiae ELsaHSoW15)
CGAGTACTGGTCCTCATGTAGTTGACCAGGAAACAAATCAACCCCACATC
ATAAGAAAAGGTATCCAGGTAGTGTGCACTCGTACAAAATTCCGATTTCT
CTGGAATTGATTGGTCTCTACCTCGGGAAGTCCAGGCGTCGTACGCAAAA
CTGAAGCAAAATTGAAGTACTCGGGGTGAAAAAGAGAGAAACGAGCCTCA
TACAGTACGTACGTACGGTAGGTCTTACGAAGCGTCTCTACCTGGTGAAA
GCTAACCCTTGTCTCAAAACCACCCATGGTCGCATCGCAAGGGCACACGC
CCGCCCCTCAACGGATGCGAGTGGCGAGAATAATCTACTCCTGGGTGTCA
GAACTATCAATCCCGGCGAAACGATACCTGGTACGTGATACTCCCGGGTT
GAAATTACGGTGGAACAGGCCGAAAACCTCGGCAACACAACACCCGAACG
CAACAGCGAGACCCGGGGAGGACGGTAGTGCTGATTTCAACGCTAATCGG
CTGTTGCACGACAGCCTTCGATTCCCACCCACTCGAGTGCGAGTGCTGGT
GCATATTCAAACACCGCGCTTCGATGCCTGTAATGATGTGACCGTAGCTG
CTACCGCCGCCATCAACCCTTTTTTAATCTGCTGCACCCGCCACTGTCCT
GCAAGTCAACTCTGGTGCCCTCCACGATGAAGCTTGCCAGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig835:18325..19016+

>mRNA_L-elsbetiae_contig835.17353.1 ID=mRNA_L-elsbetiae_contig835.17353.1|Name=mRNA_L-elsbetiae_contig835.17353.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=810bp|location=Sequence derived from alignment at L-elsbetiae_contig835:18325..19016+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCGCATCGCAAGGGCACACGCCCGCCCCTCAACGGATGCGAGTGGC
GAGAATAATCTACTCCTGGGTGTCAGAACTATCAATCCCGGCGAAACGAT
ACCTGGTACGTGATACTCCCGGGTTGAAATTACGGTGGAACAGGCCGAAA
ACCTCGGCAACACAACACCCGAACGCAACAGCGAGACCCGGGGAGGACGG
TAGTGCTGATTTCAACGCTAATCGGCTGTTGCACGACAGCCTTCGATTCC
CACCCACTCGAGTGCGAGTGCTGGTGCATATTCAAACACCGCGCTTCGAT
GCCTGTAATGATGTGACCGTAGCTGCTACCGCCGCCATCAACCCTTTTTT
AATCTGCTGCACCCGCCACTGTCCTGCAAGTCAACTCTGGTGCCCTCCAC
GATGAATGGTCGCATCGCAAGGGCACACGCCCGCCCCTCAACGGATGCGA
GTGGCGAGAATAATCTACTCCTGGGTGTCAGAACTATCAATCCCGGCGAA
ACGATACCTGGTACGTGATACTCCCGGGTTGAAATTACGGTGGAACAGGC
CGAAAACCTCGGCAACACAACACCCGAACGCAACAGCGAGACCCGGGGAG
GACGGTAGTGCTGATTTCAACGCTAATCGGCTGTTGCACGACAGCCTTCG
ATTCCCACCCACTCGAGTGCGAGTGCTGGTGCATATTCAAACACCGCGCT
TCGATGCCTGTAATGATGTGACCGTAGCTGCTACCGCCGCCATCAACCCT
TTTTTAATCTGCTGCACCCGCCACTGTCCTGCAAGTCAACTCTGGTGCCC
TCCACGATGA
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