|
|
Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 1195 |
| Cds size | 1008 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816917.2523754-UTR-L-elsbetiae_contig835:13916..14101 | 1622816917.2523754-UTR-L-elsbetiae_contig835:13916..14101 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig835 13917..14101 + |
| 1691683910.7447314-UTR-L-elsbetiae_contig835:13916..14101 | 1691683910.7447314-UTR-L-elsbetiae_contig835:13916..14101 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig835 13917..14101 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816917.2675068-CDS-L-elsbetiae_contig835:14101..14225 | 1622816917.2675068-CDS-L-elsbetiae_contig835:14101..14225 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig835 14102..14225 + |
| 1691683910.7629516-CDS-L-elsbetiae_contig835:14101..14225 | 1691683910.7629516-CDS-L-elsbetiae_contig835:14101..14225 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig835 14102..14225 + |
| 1622816917.2793586-CDS-L-elsbetiae_contig835:14241..14981 | 1622816917.2793586-CDS-L-elsbetiae_contig835:14241..14981 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig835 14242..14981 + |
| 1691683910.775152-CDS-L-elsbetiae_contig835:14241..14981 | 1691683910.775152-CDS-L-elsbetiae_contig835:14241..14981 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig835 14242..14981 + |
| 1622816917.2902694-CDS-L-elsbetiae_contig835:15250..15394 | 1622816917.2902694-CDS-L-elsbetiae_contig835:15250..15394 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig835 15251..15394 + |
| 1691683910.7864187-CDS-L-elsbetiae_contig835:15250..15394 | 1691683910.7864187-CDS-L-elsbetiae_contig835:15250..15394 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig835 15251..15394 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig835.17352.1 >prot_L-elsbetiae_contig835.17352.1 ID=prot_L-elsbetiae_contig835.17352.1|Name=mRNA_L-elsbetiae_contig835.17352.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=336bp
MSSRRDAATTVAQSNRAMVLTVPRRRSHALGKWWMEIHIDRLVAPSRRHG
VAGGKKTQFRGEHKKKDGTADAVKKRCGHGIYGAAGGKNAEVFSQHRERN
TEWWLSRTRGAPTAIASSSRSLALALPVYGKNKAELFCSGHKKDGTVNVV
DTSKKRRGRYFHPFPDHTETPSNNSPARATSEILRLSSTGPWRAGGGESP
SLHVPKIDDLFPGTGDASVVKTEMGRFEGRPRGSFPSRRSRSNKRGGRWT
GDTHRGSWLACGEKAPRRSRILGYVSYRMAKELHTVVQVIAEAGNNWRAA
AERRGQAARPCCHPMSLQASTCIICDVCARTVIDKA back to topmRNA from alignment at L-elsbetiae_contig835:13917..15394+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig835.17352.1 ID=mRNA_L-elsbetiae_contig835.17352.1|Name=mRNA_L-elsbetiae_contig835.17352.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1478bp|location=Sequence derived from alignment at L-elsbetiae_contig835:13917..15394+ (Laminarionema elsbetiae ELsaHSoW15)
GACAGGACGACCCCACGAGGTTGTAGGTCGTGAACGTTTCACCCTCTCCC
GCAGCCTGGCCCTCGCGCTAGCTATTGAAGAAGTTCTAGACTATAGGTCC
CAAACGTGTCGTCAACCTGGCCGCACCACTACGGGCTACAAGACGGCGGA
GTTCTGCTCGGAACACAAGAAGGACGGGATGGTGGATGTCGTCAAGGAGA
GATGCAGCCACCACGGTTGCCCAAAGCAACCGAGCTATGGTGTTGACGGT
ACCAAGACGTCGAAGTCACGCTCTGGGCAAATGGTGGATGGAGATACATA
TAGATAGATGCACCCACCACGGCCGTGGTTGCACCCAGTCGCCGTCATGG
TGTAGCCGGCGGCAAAAAGACGCAGTTCCGCGGTGAACACAAGAAGAAGG
ACGGGACGGCAGATGCCGTGAAAAAGAGATGTGGCCACGGTATCTATGGT
GCTGCGGGTGGCAAGAATGCGGAGGTCTTCTCTCAACATAGAGAAAGAAA
TACGGAATGGTGGCTCTCAAGAACAAGAGGTGCACCCACAGCGATTGCAT
CAAGCTCCCGGTCTTTGGCTTTGGCATTGCCGGTGTATGGCAAGAACAAG
GCGGAGTTGTTCTGCTCTGGACACAAGAAGGACGGGACGGTGAACGTCGT
TGATACCAGCAAAAAGCGGAGGGGTCGCTATTTCCATCCTTTCCCCGACC
ACACGGAGACTCCTTCGAACAACAGCCCGGCGCGAGCAACAAGCGAGATC
CTCAGGCTGTCATCGACAGGCCCATGGCGAGCAGGAGGGGGTGAGAGCCC
GAGTCTACATGTACCAAAGATAGATGATCTGTTTCCGGGGACAGGCGATG
CTTCGGTGGTAAAGACGGAGATGGGACGCTTCGAAGGTAGACCTCGCGGG
AGCTTCCCGAGTCGAAGAAGTCGAAGCAACAAGAGAGGAGGACGGTGGAC
GGGCGACACCCACCGCGGGAGTTGGCTCGCGTGCGGCGAAAAGGCCCCTC
GGAGAAGCCGGATACTTGGATATGTTTCCTATCGGATGGCGAAGGAGCTA
CACACAGTAGTGCAGGTGAGCAGAAGACTGAGAATATTAAGGGTAACTTT
GTTTACGTCGAATTCCAACAACTTCGACTTCTCAAAGTCGATGGCCTCCG
CGCAGGGTAAACATCCAACGAAGAAAGGAGTCTGTCGATGGGCATGTGGG
TGACTCTTCTTTGTTGCTTTGCCGCAACACCTTTCAAGAGCCTTGGTCGA
CCGCAGGAAGGCCCAGCACTGTACGCATAGCATTCCTGTATAACGCCGTT
TTTGCTCGTTTGACACACTCCTTCTCCCACGTAGGTCATCGCGGAGGCGG
GCAACAACTGGCGAGCCGCAGCAGAAAGGCGGGGGCAAGCAGCACGACCT
TGCTGTCACCCGATGTCGCTCCAAGCATCGACTTGTATCATATGCGACGT
GTGTGCGCGGACGGTGATTGACAAGGCT back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig835:13917..15394+ >mRNA_L-elsbetiae_contig835.17352.1 ID=mRNA_L-elsbetiae_contig835.17352.1|Name=mRNA_L-elsbetiae_contig835.17352.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2016bp|location=Sequence derived from alignment at L-elsbetiae_contig835:13917..15394+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGTCAAGGAGAGATGCAGCCACCACGGTTGCCCAAAGCAACCGAGC
TATGGTGTTGACGGTACCAAGACGTCGAAGTCACGCTCTGGGCAAATGGT
GGATGGAGATACATATAGATAGATATGTCGTCAAGGAGAGATGCAGCCAC
CACGGTTGCCCAAAGCAACCGAGCTATGGTGTTGACGGTACCAAGACGTC
GAAGTCACGCTCTGGGCAAATGGTGGATGGAGATACATATAGATAGATTG
GTTGCACCCAGTCGCCGTCATGGTGTAGCCGGCGGCAAAAAGACGCAGTT
CCGCGGTGAACACAAGAAGAAGGACGGGACGGCAGATGCCGTGAAAAAGA
GATGTGGCCACGGTATCTATGGTGCTGCGGGTGGCAAGAATGCGGAGGTC
TTCTCTCAACATAGAGAAAGAAATACGGAATGGTGGCTCTCAAGAACAAG
AGGTGCACCCACAGCGATTGCATCAAGCTCCCGGTCTTTGGCTTTGGCAT
TGCCGGTGTATGGCAAGAACAAGGCGGAGTTGTTCTGCTCTGGACACAAG
AAGGACGGGACGGTGAACGTCGTTGATACCAGCAAAAAGCGGAGGGGTCG
CTATTTCCATCCTTTCCCCGACCACACGGAGACTCCTTCGAACAACAGCC
CGGCGCGAGCAACAAGCGAGATCCTCAGGCTGTCATCGACAGGCCCATGG
CGAGCAGGAGGGGGTGAGAGCCCGAGTCTACATGTACCAAAGATAGATGA
TCTGTTTCCGGGGACAGGCGATGCTTCGGTGGTAAAGACGGAGATGGGAC
GCTTCGAAGGTAGACCTCGCGGGAGCTTCCCGAGTCGAAGAAGTCGAAGC
AACAAGAGAGGAGGACGGTGGACGGGCGACACCCACCGCGGGAGTTGGCT
CGCGTGCGGCGAAAAGGCCCCTCGGAGAAGCCGGATACTTGGATATGTTT
CCTATCGGATGGCGAAGGAGCTACACACAGTAGTGCAGTGGTTGCACCCA
GTCGCCGTCATGGTGTAGCCGGCGGCAAAAAGACGCAGTTCCGCGGTGAA
CACAAGAAGAAGGACGGGACGGCAGATGCCGTGAAAAAGAGATGTGGCCA
CGGTATCTATGGTGCTGCGGGTGGCAAGAATGCGGAGGTCTTCTCTCAAC
ATAGAGAAAGAAATACGGAATGGTGGCTCTCAAGAACAAGAGGTGCACCC
ACAGCGATTGCATCAAGCTCCCGGTCTTTGGCTTTGGCATTGCCGGTGTA
TGGCAAGAACAAGGCGGAGTTGTTCTGCTCTGGACACAAGAAGGACGGGA
CGGTGAACGTCGTTGATACCAGCAAAAAGCGGAGGGGTCGCTATTTCCAT
CCTTTCCCCGACCACACGGAGACTCCTTCGAACAACAGCCCGGCGCGAGC
AACAAGCGAGATCCTCAGGCTGTCATCGACAGGCCCATGGCGAGCAGGAG
GGGGTGAGAGCCCGAGTCTACATGTACCAAAGATAGATGATCTGTTTCCG
GGGACAGGCGATGCTTCGGTGGTAAAGACGGAGATGGGACGCTTCGAAGG
TAGACCTCGCGGGAGCTTCCCGAGTCGAAGAAGTCGAAGCAACAAGAGAG
GAGGACGGTGGACGGGCGACACCCACCGCGGGAGTTGGCTCGCGTGCGGC
GAAAAGGCCCCTCGGAGAAGCCGGATACTTGGATATGTTTCCTATCGGAT
GGCGAAGGAGCTACACACAGTAGTGCAGGTCATCGCGGAGGCGGGCAACA
ACTGGCGAGCCGCAGCAGAAAGGCGGGGGCAAGCAGCACGACCTTGCTGT
CACCCGATGTCGCTCCAAGCATCGACTTGTATCATATGCGACGTGTGTGC
GCGGACGGTGATTGACAAGGCTGTCATCGCGGAGGCGGGCAACAACTGGC
GAGCCGCAGCAGAAAGGCGGGGGCAAGCAGCACGACCTTGCTGTCACCCG
ATGTCGCTCCAAGCATCGACTTGTATCATATGCGACGTGTGTGCGCGGAC
GGTGATTGACAAGGCT back to top
|