mRNA_L-elsbetiae_contig8349.17351.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8349.17351.1
Unique NamemRNA_L-elsbetiae_contig8349.17351.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig8349.17351.1 vs. uniprot
Match: A0A6H5JZ53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ53_9PHAE)

HSP 1 Score: 296 bits (757), Expect = 4.000e-94
Identity = 158/280 (56.43%), Postives = 197/280 (70.36%), Query Frame = 1
Query:    1 MEELQNTHMNSGENPDDYFNQKHLLRLKAEKMGETVSDRWFKDICVSGFNDEYKDVKMTVYRDSTFDVAQMQTTMRNMFLDEQSRKGSKGRIAGRGIVMTATSEDINCFACHEPGHSRKDCPQVKAKTVTRKKTKPKGAAKWCSIHYTTSHSDEECY----GAKRPERSGATAKAFTACTQCTHCSGTPNGASTAKEVTAAVTSTTKSAIDFTMDAD-FDEGFMFATAS---GRDFTPSQTGATLLIDTGATETMIDSKLIPGVRIGMKDYKHLSTPKTI 816
            MEEL+N  MN GENPDDYFNQKH L ++ +KMGE +SDR FKDICV GF+DEY+DVK+ ++RD TF+V  MQ+TMRN++LDEQSRKG KGRIAGRG  M  T+ DI C +C+EPGH R++CP++K +   +KKTKP GA KWCS H TTSHSDEECY    G K PE +  ++KAFT C+ CTHCS T N   +  EVT          +DFT D D FD GFMFAT S   GR+F  S TG  LL+DTGA+ TM D++L+P   +   DY   ++PK +
Sbjct:    1 MEELENNPMNPGENPDDYFNQKHPLCVQLDKMGEPISDRRFKDICVQGFSDEYEDVKLMLFRDPTFNVLDMQSTMRNIYLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRA--KKKTKPAGATKWCSKHNTTSHSDEECYQQXQGGKCPEDTKDSSKAFTPCSDCTHCSSTCNKHDSNNEVTV---------VDFTRDEDAFDSGFMFATCSRISGRNFAASSTGVGLLVDTGASATMFDNRLMPDGNL--HDYTQRNSPKVV 267          
BLAST of mRNA_L-elsbetiae_contig8349.17351.1 vs. uniprot
Match: A0A6H5L580_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L580_9PHAE)

HSP 1 Score: 298 bits (762), Expect = 5.560e-93
Identity = 159/278 (57.19%), Postives = 195/278 (70.14%), Query Frame = 1
Query:    1 MEELQNTHMNSGENPDDYFNQKHLLRLKAEKMGETVSDRWFKDICVSGFNDEYKDVKMTVYRDSTFDVAQMQTTMRNMFLDEQSRKGSKGRIAGRGIVMTATSEDINCFACHEPGHSRKDCPQVKAKTVTRKKTKPKGAAKWCSIHYTTSHSDEECY--GAKRPERSGATAKAFTACTQCTHCSGTPNGASTAKEVTAAVTSTTKSAIDFTMDAD-FDEGFMFATAS---GRDFTPSQTGATLLIDTGATETMIDSKLIPGVRIGMKDYKHLSTPKTI 816
            MEEL+N  MN GENPDDYFNQKHLLR + +KMGE +SDR FKDICV GF+DEYKDVK+ V+RD TF+V  M +TMRN+FLDEQSRKG KGRIAGRG  M  T+ DI C +C+EPGH R++CP++K +   +KKTKP GA KWCS H TTSHSDEECY  G KRPE +  + K FTAC+ CTHCS       +  EV         + +DFT D D FD GFMFAT S   GR+F  S TG  L++D+ A+ETM D++LIP   +   DY   ++PK +
Sbjct:  156 MEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMLSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRA--KKKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDTKDSNKVFTACSNCTHCSSASKKDDSNNEV---------AVVDFTRDEDAFDSGFMFATCSRISGRNFAASSTGVRLVVDSEASETMFDNRLIPDGNL--HDYTQRNSPKIV 420          
BLAST of mRNA_L-elsbetiae_contig8349.17351.1 vs. uniprot
Match: A0A6H5KXR7_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXR7_9PHAE)

HSP 1 Score: 283 bits (725), Expect = 4.100e-91
Identity = 155/279 (55.56%), Postives = 193/279 (69.18%), Query Frame = 1
Query:    1 MEELQNTHMNSGENPDDYFNQKHLLRLKAEKMGETVSDRWFKDICVSGFNDEYKDVKMTVYRDSTFDVAQMQTTMRNM-FLDEQSRKGSKGRIAGRGIVMTATSEDINCFACHEPGHSRKDCPQVKAKTVTRKKTKPKGAAKWCSIHYTTSHSDEECY--GAKRPERSGATAKAFTACTQCTHCSGTPNGASTAKEVTAAVTSTTKSAIDFTMDAD-FDEGFMFATASG---RDFTPSQTGATLLIDTGATETMIDSKLIPGVRIGMKDYKHLSTPKTI 816
            MEEL+N  MN GENPDDYFNQKHL+R + +KMGE +SDR  KDI V GF+DEY+DVK+ V+RD TF+   MQ+T+RN  + +EQSRKG KGRIAGRG  M  T+ DI C +C+EPGH R++CP++K +   +KKTKP GA KWC  H TTSHSDEECY  G KRPE +  ++KAFTAC+ CTHCS  PN   +  EV  A         DFT D D FD GFMF T S    R+F  S TG+ LL+DTGA+ETM D++LIP   +   DY   ++PK +
Sbjct:   96 MEELENNPMNPGENPDDYFNQKHLIRAQLDKMGEPISDRRCKDIWVQGFSDEYRDVKLMVFRDPTFNALGMQSTIRNTSWTNEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRA--KKKTKPAGATKWCCKHNTTSHSDEECYQQGGKRPEDTKDSSKAFTACSDCTHCSSAPNKNDSNNEVAVA---------DFTRDEDAFDSGFMFGTCSRISERNFAASSTGSILLVDTGASETMFDNRLIPDGNL--HDYTQRNSPKIV 361          
BLAST of mRNA_L-elsbetiae_contig8349.17351.1 vs. uniprot
Match: A0A6H5JQ58_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ58_9PHAE)

HSP 1 Score: 261 bits (667), Expect = 4.870e-84
Identity = 140/247 (56.68%), Postives = 175/247 (70.85%), Query Frame = 1
Query:   37 ENPDDYFNQKHLLRLKAEKMGETVSDRWFKDICVSGFNDEYKDVKMTVYRDSTFDVAQMQTTMRNMFLDEQSRKGSKGRIAGRGIVMTATSEDINCFACHEPGHSRKDCPQVKAKTVTRKKTKPKGAAKWCSIHYTTSHSDEECY--GAKRPERSGATAKAFTACTQCTHCSGTPNGASTAKEVTAAVTSTTKSAIDFTMDAD-FDEGFMFATA---SGRDFTPSQTGATLLIDTGATETMIDSKLI 759
            ENPDD+FN+ H LR    K+GET+S R FKDICV GF+++YKD+KM V+RD +FD  QMQ+TMRN+FLDEQSRKG KGRIAGRG  M  T+ +I C +C+EPGH R++CP++K +   +KKTKP GA KW S H T SHSDEECY  G KRPE +  ++KAFTAC  CTHCS   N   +  EV         + ++FT D + FD GFMFAT    SGR+F  S TG  LL+DTGA+ETM D++LI
Sbjct:    5 ENPDDFFNEIHRLRSHLAKIGETISGRRFKDICVQGFSEDYKDIKMMVFRDPSFDEQQMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASNIICHSCYEPGHIRRNCPKIKNRA--KKKTKPAGATKWYSKHNTLSHSDEECYQQGRKRPEDTKDSSKAFTACFNCTHCSSASNKNDSNNEV---------AVVNFTPDENAFDSGFMFATCFRISGRNFAASSTGVGLLVDTGASETMFDNRLI 240          
BLAST of mRNA_L-elsbetiae_contig8349.17351.1 vs. uniprot
Match: A0A6H5KJB9_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJB9_9PHAE)

HSP 1 Score: 275 bits (704), Expect = 4.890e-84
Identity = 150/282 (53.19%), Postives = 190/282 (67.38%), Query Frame = 1
Query:    1 MEELQNTHMNSGENPDDYFNQKHLLRLKAEKMGETVSDRWFKDICVSGFNDEYKDVKMTVYRDSTFDVAQMQTTMRNMFLDEQSRKGSKGRIAGRGIVMTATSEDINCFACHEPGHSRKDCPQVKAKTVTRKKTKPKGAAKWCSIHYTTSHSDEECY--GAKRPERSGATAKAFTACTQCTHCSGTP---NGASTAKEVTAAVTSTTKSAIDFTMDAD-FDEGFMF----ATASGRDFTPSQTGATLLIDTGATETMIDSKLIPGVRIGMKDYKHLSTPKTI 816
            +++L+ T M  GENPDD+FN+KH LR + EKMGET+SDR FKDICV GF+++YKD+KM V+RD +FDV QMQ TMRN+FLDEQ RK +KG+IAGRG  M   +    CF C+EPGH R++CP  + +    KKTKP GA KWCS+H TT+HSDEECY  GAKRPER+G   KAF+ACT C HCS      +   T  E       T K+ IDF+ D D F  GFM+    +  SGR FT + TG + L+D+GA+ETM D +LIP  R+     +   TPK I
Sbjct:  136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPERTG---KAFSACTHCVHCSTQSRDTHAKPTTTETPTETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDDRLIPNGRL----EEERPTPKII 410          
BLAST of mRNA_L-elsbetiae_contig8349.17351.1 vs. uniprot
Match: A0A6H5JKH7_9PHAE (gag_pre-integrs domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKH7_9PHAE)

HSP 1 Score: 275 bits (704), Expect = 1.680e-83
Identity = 151/261 (57.85%), Postives = 183/261 (70.11%), Query Frame = 1
Query:    1 MEELQNTHMNSGENPDDYFNQKHLLRLKAEKMGETVSDRWFKDICVSGFNDEYKDVKMTVYRDSTFDVAQMQTTMRNMFLDEQSRKGSKGRIAGRGIVMTATSEDINCFACHEPGHSRKDCPQVKAKTVTRKKTKPKGAAKWCSIHYTTSHSDEECY--GAKRPERSGATAKAFTACTQCTHCSGTPNGASTAKEVTAAVTSTTKSAIDFTMDAD-FDEGFMFATASG---RDFTPSQTGATLLIDTGATETMIDSKLIPG 765
            MEEL+N  MN GENPDDYFNQKHLLR + +KMGE +SDR FKDICV GF+DEYKDVK+ V+RD TF V  MQ+TMRN+FLDEQSRKG KGRIAGRG  M  T+ DI C+   EPGH R++CP++K +   +KKTKP GA KWCS H TTSHSDEECY  G KRPE +  ++KAFTAC+ CT          +  EV         + +DFT D D FD GFMFAT S    R+   + TG  LL+DTG +ET++D++LI G
Sbjct:    1 MEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFSVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIICY---EPGHIRRNCPKIKNRA--KKKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDTKDSSKAFTACSDCTXXXXXXXKNDSNNEV---------AVVDFTRDEDAFDSGFMFATCSRISKRNLAATSTGVGLLVDTGVSETILDNRLIAG 247          
BLAST of mRNA_L-elsbetiae_contig8349.17351.1 vs. uniprot
Match: A0A6H5KW66_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW66_9PHAE)

HSP 1 Score: 275 bits (703), Expect = 2.860e-83
Identity = 159/319 (49.84%), Postives = 199/319 (62.38%), Query Frame = 1
Query:    1 MEELQNTHMNSGENPDDYFNQKHLLRLKAEKMGETVSDRWFKDICVSGFNDEYKDVKMTVYRDSTFDVAQMQTTMRNMFLDEQSRKGSKGRIAGRGIVMTAT-SEDINCFACHEPGHSRKDCPQVKAKTVTRKKTKPKGAAKWCSIHYTTSHSDEECY--GAKRPERSGATAKAFTACTQCTHCSGTPNGASTAKEVTAAVTSTTKSAIDFTMDADFDEGFMFATA-SGRDFTPSQTGAT------------------------------------------LLIDTGATETMIDSKLIPGVRIGMKDYKHLSTPKTIT 819
            MEEL NT M   +NPDDYFNQKHLLR KAEKMGET+SD +F D CV+GF +EYKDVKM +YRD  F+V +MQTTMR+MFLDEQSR G KG IAGRG  MTAT SE+  CF C E GH  ++C + + K   +KKTKP GAAKWCS+H+TT HSDEEC+  GA RP++S  T KA +AC  CTHC  T N   T   +T    S+T++ IDF+ + + +EGFM+A    G D  P  TGAT                                          LLIDTGA+E M+D  LIPG++  M+++K L+ PK ++
Sbjct:  116 MEELINTPMEPRQNPDDYFNQKHLLRHKAEKMGETISDCYFNDECVTGFTNEYKDVKMIMYRDPDFNVDKMQTTMRHMFLDEQSRNGPKGSIAGRGFAMTATTSEEPTCFDCGEKGHIWRNCSEKRGKG--KKKTKPAGAAKWCSVHFTTRHSDEECFEQGATRPKKSSNTGKALSACASCTHCFSTSN--KTELAMTKQEASSTQAEIDFSAEGESEEGFMYAIVHKGEDLKPMATGATPLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLIDTGASENMLDDCLIPGLKEIMREHKELAKPKVVS 430          
BLAST of mRNA_L-elsbetiae_contig8349.17351.1 vs. uniprot
Match: A0A6H5JF66_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF66_9PHAE)

HSP 1 Score: 262 bits (670), Expect = 5.190e-83
Identity = 140/235 (59.57%), Postives = 167/235 (71.06%), Query Frame = 1
Query:    1 MEELQNTHMNSGENPDDYFNQKHLLRLKAEKMGETVSDRWFKDICVSGFNDEYKDVKMTVYRDSTFDVAQMQTTMRNMFLDEQSRKGSKGRIAGRGIVMTATSEDINCFACHEPGHSRKDCPQVKAKTVTRKKTKPKGAAKWCSIHYTTSHSDEECY--GAKRPERSGATAKAFTACTQCTHCSGTPNGASTAKEVTAAVTSTTKSAIDFTMDAD-FDEGFMFATASGRDFTPSQ 696
            MEEL+N  MN GENPD+YFNQKHLLR + +KMGE +SDR FKDICV GF+DEYKDVK+ V+RD TF+V  MQ+TMRN+FLDEQSRKG KGRIAGRG  M  T+ DI C +C+EPGH R++CP++K +   +KKTKP GA KWCS H TTSHSDEECY  G KRPE +  ++KAFTAC+ CT      N   +  EV         + +DFT D D FD GFMFAT S      SQ
Sbjct:  138 MEELENNPMNPGENPDNYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRA--KKKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDTKDSSKAFTACSNCTXXXXXXNKHDSNDEV---------AVVDFTRDEDAFDSGFMFATCSRSQDATSQ 361          
BLAST of mRNA_L-elsbetiae_contig8349.17351.1 vs. uniprot
Match: A0A6H5K0G3_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G3_9PHAE)

HSP 1 Score: 276 bits (706), Expect = 1.640e-82
Identity = 148/258 (57.36%), Postives = 181/258 (70.16%), Query Frame = 1
Query:    1 MEELQNTHMNSGENPDDYFNQKHLLRLKAEKMGETVSDRWFKDICVSGFNDEYKDVKMTVYRDSTFDVAQMQTTMRNMFLDEQSRKGSKGRIAGRGIVMTATSEDINCFACHEPGHSRKDCPQVKAKTVTRKKTKPKGAAKWCSIHYTTSHSDEECY--GAKRPERSGATAKAFTACTQCTHCSGTPNGASTAKEVTAAVTSTTKSAIDFTMDAD-FDEGFMFATAS---GRDFTPSQTGATLLIDTGATETMIDSKL 756
            MEEL+N  MN GE+PDDY NQKHLLR + + MGE +SDR FKDICV G +DE+KDVK+ V+RD TF+V  MQ+TMRN+FLDEQSRKG KG IAGRG  M  T+ DI C +C+EPGH R++CP +K +   +KKTKP GA  WCS H TTSHSDEECY  G KRPE +  ++KAFTAC+ CTH     N   +  EV         + +DFT D D FD GF+F T S   GR+F  S TG  LL+DTGA+ETM D++L
Sbjct:   74 MEELENNPMNPGEDPDDYCNQKHLLRTQLDTMGEPISDRRFKDICVQGISDEHKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGCIAGRGFAMATTASDIICHSCYEPGHIRRNCPMIKNRA--KKKTKPAGATTWCSKHNTTSHSDEECYQQGGKRPEDTKDSSKAFTACSNCTHXXSASNKHDSNNEV---------AVVDFTRDEDAFDSGFIFGTCSRISGRNFAASSTGVGLLVDTGASETMFDNRL 320          
BLAST of mRNA_L-elsbetiae_contig8349.17351.1 vs. uniprot
Match: A0A6H5JUN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN9_9PHAE)

HSP 1 Score: 276 bits (707), Expect = 1.890e-82
Identity = 150/282 (53.19%), Postives = 192/282 (68.09%), Query Frame = 1
Query:    1 MEELQNTHMNSGENPDDYFNQKHLLRLKAEKMGETVSDRWFKDICVSGFNDEYKDVKMTVYRDSTFDVAQMQTTMRNMFLDEQSRKGSKGRIAGRGIVMTATSEDINCFACHEPGHSRKDCPQVKAKTVTRKKTKPKGAAKWCSIHYTTSHSDEECY--GAKRPERSGATAKAFTACTQCTHCSGTP---NGASTAKEVTAAVTSTTKSAIDFTMDAD-FDEGFMF----ATASGRDFTPSQTGATLLIDTGATETMIDSKLIPGVRIGMKDYKHLSTPKTI 816
            +++L+ T M  GENPDD+FN+KH LR + EKMGET+SDR FKDICV GF+++YKD+KM V+RD +FDV QMQ TMRN+FLDEQ RK +KG+IAGRG  M   +    CF C+EPGH R++CP  + +    KKTKP GA KWCS+H TT+HSDEECY  GAKRPER+G   KAF+ACT C HCS      +   T  E+      T K+ IDF+ D D F  GFM+    +  SGR FT + TG + L+D+GA+ETM D++LIP  R+     +   TPK I
Sbjct:  155 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPERTG---KAFSACTHCVHCSTQSRDIHAKPTTTEIPKETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPNGRL----EEERPTPKII 429          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8349.17351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZ53_9PHAE4.000e-9456.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L580_9PHAE5.560e-9357.19CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KXR7_9PHAE4.100e-9155.56CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JQ58_9PHAE4.870e-8456.68CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KJB9_9PHAE4.890e-8453.19Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
A0A6H5JKH7_9PHAE1.680e-8357.85gag_pre-integrs domain-containing protein n=1 Tax=... [more]
A0A6H5KW66_9PHAE2.860e-8349.84CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JF66_9PHAE5.190e-8359.57CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5K0G3_9PHAE1.640e-8257.36CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JUN9_9PHAE1.890e-8253.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8349contigL-elsbetiae_contig8349:3666..4490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size827
Cds size825
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816917.2188444-CDS-L-elsbetiae_contig8349:3665..44901622816917.2188444-CDS-L-elsbetiae_contig8349:3665..4490Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8349 3666..4490 -
1691683910.7316847-CDS-L-elsbetiae_contig8349:3665..44901691683910.7316847-CDS-L-elsbetiae_contig8349:3665..4490Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8349 3666..4490 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8349.17351.1prot_L-elsbetiae_contig8349.17351.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8349 3666..4490 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8349.17351.1

>prot_L-elsbetiae_contig8349.17351.1 ID=prot_L-elsbetiae_contig8349.17351.1|Name=mRNA_L-elsbetiae_contig8349.17351.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=275bp
MEELQNTHMNSGENPDDYFNQKHLLRLKAEKMGETVSDRWFKDICVSGFN
DEYKDVKMTVYRDSTFDVAQMQTTMRNMFLDEQSRKGSKGRIAGRGIVMT
ATSEDINCFACHEPGHSRKDCPQVKAKTVTRKKTKPKGAAKWCSIHYTTS
HSDEECYGAKRPERSGATAKAFTACTQCTHCSGTPNGASTAKEVTAAVTS
TTKSAIDFTMDADFDEGFMFATASGRDFTPSQTGATLLIDTGATETMIDS
KLIPGVRIGMKDYKHLSTPKTITGA
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mRNA from alignment at L-elsbetiae_contig8349:3666..4490-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8349.17351.1 ID=mRNA_L-elsbetiae_contig8349.17351.1|Name=mRNA_L-elsbetiae_contig8349.17351.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=825bp|location=Sequence derived from alignment at L-elsbetiae_contig8349:3666..4490- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGAGCTACAAAACACGCACATGAACTCCGGGGAGAATCCAGACGA CTACTTCAACCAGAAACACCTCCTTCGTCTGAAAGCTGAGAAAATGGGAG AGACGGTATCCGACCGGTGGTTCAAGGACATCTGCGTTTCCGGATTCAAC GACGAGTACAAGGACGTGAAAATGACGGTATACCGTGACTCGACCTTCGA CGTCGCCCAGATGCAAACTACCATGCGCAATATGTTCCTTGACGAGCAAT CACGCAAGGGATCGAAGGGCCGCATCGCCGGCCGCGGCATCGTCATGACT GCCACTTCAGAGGACATCAACTGCTTCGCCTGCCACGAACCCGGGCACTC AAGGAAGGACTGCCCCCAGGTGAAGGCAAAGACCGTTACGAGGAAGAAGA CCAAGCCCAAGGGAGCAGCTAAGTGGTGCTCCATCCACTACACGACATCC CACTCCGACGAAGAATGCTACGGCGCTAAACGCCCGGAACGGTCCGGCGC GACCGCCAAGGCATTCACCGCCTGCACTCAGTGCACCCACTGCTCTGGCA CTCCCAACGGGGCCAGCACCGCGAAGGAGGTCACAGCCGCGGTAACTAGC ACCACTAAGTCGGCGATCGACTTCACCATGGACGCGGACTTCGACGAAGG ATTCATGTTCGCCACAGCAAGTGGAAGAGACTTCACTCCCAGCCAAACAG GAGCTACGCTACTGATCGACACCGGCGCCACGGAAACCATGATTGACTCC AAGCTCATCCCAGGCGTCAGGATTGGAATGAAGGACTACAAGCACCTCAG TACCCCGAAGACCATCACGGGTGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8349:3666..4490-

>mRNA_L-elsbetiae_contig8349.17351.1 ID=mRNA_L-elsbetiae_contig8349.17351.1|Name=mRNA_L-elsbetiae_contig8349.17351.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1650bp|location=Sequence derived from alignment at L-elsbetiae_contig8349:3666..4490- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGAGCTACAAAACACGCACATGAACTCCGGGGAGAATCCAGACGA
CTACTTCAACCAGAAACACCTCCTTCGTCTGAAAGCTGAGAAAATGGGAG
AGACGGTATCCGACCGGTGGTTCAAGGACATCTGCGTTTCCGGATTCAAC
GACGAGTACAAGGACGTGAAAATGACGGTATACCGTGACTCGACCTTCGA
CGTCGCCCAGATGCAAACTACCATGCGCAATATGTTCCTTGACGAGCAAT
CACGCAAGGGATCGAAGGGCCGCATCGCCGGCCGCGGCATCGTCATGACT
GCCACTTCAGAGGACATCAACTGCTTCGCCTGCCACGAACCCGGGCACTC
AAGGAAGGACTGCCCCCAGGTGAAGGCAAAGACCGTTACGAGGAAGAAGA
CCAAGCCCAAGGGAGCAGCTAAGTGGTGCTCCATCCACTACACGACATCC
CACTCCGACGAAGAATGCTACGGCGCTAAACGCCCGGAACGGTCCGGCGC
GACCGCCAAGGCATTCACCGCCTGCACTCAGTGCACCCACTGCTCTGGCA
CTCCCAACGGGGCCAGCACCGCGAAGGAGGTCACAGCCGCGGTAACTAGC
ACCACTAAGTCGGCGATCGACTTCACCATGGACGCGGACTTCGACGAAGG
ATTCATGTTCGCCACAGCAAGTGGAAGAGACTTCACTCCCAGCCAAACAG
GAGCTACGCTACTGATCGACACCGGCGCCACGGAAACCATGATTGACTCC
AAGCTCATCCCAGGCGTCAGGATTGGAATGAAGGACTACAAGCACCTCAG
TACCCCGAAGACCATCACGGGTGCCATGGAGGAGCTACAAAACACGCACA
TGAACTCCGGGGAGAATCCAGACGACTACTTCAACCAGAAACACCTCCTT
CGTCTGAAAGCTGAGAAAATGGGAGAGACGGTATCCGACCGGTGGTTCAA
GGACATCTGCGTTTCCGGATTCAACGACGAGTACAAGGACGTGAAAATGA
CGGTATACCGTGACTCGACCTTCGACGTCGCCCAGATGCAAACTACCATG
CGCAATATGTTCCTTGACGAGCAATCACGCAAGGGATCGAAGGGCCGCAT
CGCCGGCCGCGGCATCGTCATGACTGCCACTTCAGAGGACATCAACTGCT
TCGCCTGCCACGAACCCGGGCACTCAAGGAAGGACTGCCCCCAGGTGAAG
GCAAAGACCGTTACGAGGAAGAAGACCAAGCCCAAGGGAGCAGCTAAGTG
GTGCTCCATCCACTACACGACATCCCACTCCGACGAAGAATGCTACGGCG
CTAAACGCCCGGAACGGTCCGGCGCGACCGCCAAGGCATTCACCGCCTGC
ACTCAGTGCACCCACTGCTCTGGCACTCCCAACGGGGCCAGCACCGCGAA
GGAGGTCACAGCCGCGGTAACTAGCACCACTAAGTCGGCGATCGACTTCA
CCATGGACGCGGACTTCGACGAAGGATTCATGTTCGCCACAGCAAGTGGA
AGAGACTTCACTCCCAGCCAAACAGGAGCTACGCTACTGATCGACACCGG
CGCCACGGAAACCATGATTGACTCCAAGCTCATCCCAGGCGTCAGGATTG
GAATGAAGGACTACAAGCACCTCAGTACCCCGAAGACCATCACGGGTGCC
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