mRNA_L-elsbetiae_contig8340.17347.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8340.17347.1
Unique NamemRNA_L-elsbetiae_contig8340.17347.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8340.17347.1 vs. uniprot
Match: D7FMW4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMW4_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 1.060e-16
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 3 
Query:    3 SAIKACLSPYYDLSEWEDRYITKSLGAEVEEFGSASHPPRSPLKEFFL 146
            SAI ACLSPYY+L EWEDRY+  SLG+EV+EFGSA HPPR PL+EF L
Sbjct:   35 SAINACLSPYYNLREWEDRYVVTSLGSEVQEFGSAGHPPRFPLEEFLL 82
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8340.17347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMW4_ECTSI1.060e-1675.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8340contigL-elsbetiae_contig8340:3687..4050 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size364
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816916.8598223-CDS-L-elsbetiae_contig8340:3686..40491622816916.8598223-CDS-L-elsbetiae_contig8340:3686..4049Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8340 3687..4049 +
1691683910.4262743-CDS-L-elsbetiae_contig8340:3686..40491691683910.4262743-CDS-L-elsbetiae_contig8340:3686..4049Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8340 3687..4049 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8340.17347.1prot_L-elsbetiae_contig8340.17347.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8340 3687..4049 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8340.17347.1

>prot_L-elsbetiae_contig8340.17347.1 ID=prot_L-elsbetiae_contig8340.17347.1|Name=mRNA_L-elsbetiae_contig8340.17347.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
SQRLRRVYRHTTTCPSGRIATSPSPLEQRWRSSAARAIHLAPRSRSFSYL
RTKKKTTTAAAAAAKMTAILPPPRTARISRTMPPISATLAVATTGTAAMS
VRAKRCERKRRTRRRKTRKTR
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mRNA from alignment at L-elsbetiae_contig8340:3687..4050+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8340.17347.1 ID=mRNA_L-elsbetiae_contig8340.17347.1|Name=mRNA_L-elsbetiae_contig8340.17347.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=364bp|location=Sequence derived from alignment at L-elsbetiae_contig8340:3687..4050+ (Laminarionema elsbetiae ELsaHSoW15)
AGTCAGCGATTAAGGCGTGTCTATCGCCATACTACGACCTGTCCGAGTGG
GAGGATCGCTACATCACCAAGTCCCTTGGAGCAGAGGTGGAGGAGTTCGG
CAGCGCGAGCCATCCACCTCGCTCCCCGCTCAAGGAGTTTTTCTTATCTT
CGGACGAAGAAGAAGACGACGACGGCGGCGGCGGCGGCGGCGAAGATGAC
GGCGATACTGCCGCCGCCGAGAACGGCACGAATATCGCGGACGATGCCGC
CGATCTCGGCCACGCTGGCGGTGGCAACGACGGGAACTGCGGCCATGTCG
GTGCGGGCGAAGAGATGCGAGAGGAAGAGGAGGACGAGGAGGAGGAAGAC
GAGGAAGACGCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8340:3687..4050+

>mRNA_L-elsbetiae_contig8340.17347.1 ID=mRNA_L-elsbetiae_contig8340.17347.1|Name=mRNA_L-elsbetiae_contig8340.17347.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig8340:3687..4050+ (Laminarionema elsbetiae ELsaHSoW15)
AGTCAGCGATTAAGGCGTGTCTATCGCCATACTACGACCTGTCCGAGTGG
GAGGATCGCTACATCACCAAGTCCCTTGGAGCAGAGGTGGAGGAGTTCGG
CAGCGCGAGCCATCCACCTCGCTCCCCGCTCAAGGAGTTTTTCTTATCTT
CGGACGAAGAAGAAGACGACGACGGCGGCGGCGGCGGCGGCGAAGATGAC
GGCGATACTGCCGCCGCCGAGAACGGCACGAATATCGCGGACGATGCCGC
CGATCTCGGCCACGCTGGCGGTGGCAACGACGGGAACTGCGGCCATGTCG
GTGCGGGCGAAGAGATGCGAGAGGAAGAGGAGGACGAGGAGGAGGAAGAC
GAGGAAGACGCGGAGTCAGCGATTAAGGCGTGTCTATCGCCATACTACGA
CCTGTCCGAGTGGGAGGATCGCTACATCACCAAGTCCCTTGGAGCAGAGG
TGGAGGAGTTCGGCAGCGCGAGCCATCCACCTCGCTCCCCGCTCAAGGAG
TTTTTCTTATCTTCGGACGAAGAAGAAGACGACGACGGCGGCGGCGGCGG
CGGCGAAGATGACGGCGATACTGCCGCCGCCGAGAACGGCACGAATATCG
CGGACGATGCCGCCGATCTCGGCCACGCTGGCGGTGGCAACGACGGGAAC
TGCGGCCATGTCGGTGCGGGCGAAGAGATGCGAGAGGAAGAGGAGGACGA
GGAGGAGGAAGACGAGGAAGACGCGG
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