mRNA_L-elsbetiae_contig8339.17344.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8339.17344.1
Unique NamemRNA_L-elsbetiae_contig8339.17344.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8339.17344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8339contigL-elsbetiae_contig8339:3616..4305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size690
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8339.17344.1prot_L-elsbetiae_contig8339.17344.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8339 3627..4046 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816916.505843-UTR-L-elsbetiae_contig8339:3615..36261622816916.505843-UTR-L-elsbetiae_contig8339:3615..3626Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8339 3616..3626 +
1691683910.1233556-UTR-L-elsbetiae_contig8339:3615..36261691683910.1233556-UTR-L-elsbetiae_contig8339:3615..3626Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8339 3616..3626 +
1622816916.5291488-UTR-L-elsbetiae_contig8339:4046..43051622816916.5291488-UTR-L-elsbetiae_contig8339:4046..4305Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8339 4047..4305 +
1691683910.1468205-UTR-L-elsbetiae_contig8339:4046..43051691683910.1468205-UTR-L-elsbetiae_contig8339:4046..4305Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8339 4047..4305 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816916.5187223-CDS-L-elsbetiae_contig8339:3626..40461622816916.5187223-CDS-L-elsbetiae_contig8339:3626..4046Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8339 3627..4046 +
1691683910.1354427-CDS-L-elsbetiae_contig8339:3626..40461691683910.1354427-CDS-L-elsbetiae_contig8339:3626..4046Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8339 3627..4046 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8339.17344.1

>prot_L-elsbetiae_contig8339.17344.1 ID=prot_L-elsbetiae_contig8339.17344.1|Name=mRNA_L-elsbetiae_contig8339.17344.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=140bp
MVQPYRKSAGHPPARKEHAHLKTSPPPSRACAGHQYASPRSPACSVLEEI
NDSMYNLRCSYLVLVVQVLGPGSLCGRRIRAAFRHTLAAIGQASSSRRQQ
RELVLCANAGGVRAHLRTKMWNDGHEIGRHGDPATFTLN*
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mRNA from alignment at L-elsbetiae_contig8339:3616..4305+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8339.17344.1 ID=mRNA_L-elsbetiae_contig8339.17344.1|Name=mRNA_L-elsbetiae_contig8339.17344.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig8339:3616..4305+ (Laminarionema elsbetiae ELsaHSoW15)
AGTAGGTTCAGATGGTTCAGCCGTATCGCAAGTCCGCCGGGCACCCACCC
GCAAGAAAGGAACACGCGCATTTAAAGACCTCCCCCCCACCCTCTCGGGC
ATGCGCTGGCCACCAGTACGCCAGCCCTAGGAGCCCCGCATGCTCGGTAT
TGGAGGAAATAAATGACAGCATGTACAACCTCCGTTGCTCCTATCTGGTG
TTAGTGGTGCAGGTTTTAGGCCCTGGATCGCTCTGTGGGCGTCGAATCAG
AGCTGCCTTCCGACACACTTTAGCTGCGATCGGCCAGGCCAGCAGCAGCA
GACGGCAGCAGCGAGAGTTAGTGCTGTGCGCGAATGCTGGTGGCGTGAGG
GCACACCTAAGAACAAAGATGTGGAATGACGGTCACGAGATTGGCCGTCA
CGGGGATCCCGCCACCTTTACGCTAAACTAAAATTAGTGCGGAAATCTCG
TGGCCGACGGACAGCCACGAGCTCCAACTGCGGCCATTCCGCATCTTTGC
CTGAGAACCTACTATTGCCCATATGTGCAGTCTCCTGAGGGATCAAGAAG
CTCGGTCGGCGTAATAAATCGTGCTACAATCTGCTGCAATCTGTCTCTCA
ACTGGCTTTCTCTCTCTCTCTCTTCCCTATCCGAATTGCGCGATGCCAAG
AGTTAGGGCTGTGCGCAAACTACTATTGCCTATTTTTTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8339:3616..4305+

>mRNA_L-elsbetiae_contig8339.17344.1 ID=mRNA_L-elsbetiae_contig8339.17344.1|Name=mRNA_L-elsbetiae_contig8339.17344.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=840bp|location=Sequence derived from alignment at L-elsbetiae_contig8339:3616..4305+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTTCAGCCGTATCGCAAGTCCGCCGGGCACCCACCCGCAAGAAAGGA
ACACGCGCATTTAAAGACCTCCCCCCCACCCTCTCGGGCATGCGCTGGCC
ACCAGTACGCCAGCCCTAGGAGCCCCGCATGCTCGGTATTGGAGGAAATA
AATGACAGCATGTACAACCTCCGTTGCTCCTATCTGGTGTTAGTGGTGCA
GGTTTTAGGCCCTGGATCGCTCTGTGGGCGTCGAATCAGAGCTGCCTTCC
GACACACTTTAGCTGCGATCGGCCAGGCCAGCAGCAGCAGACGGCAGCAG
CGAGAGTTAGTGCTGTGCGCGAATGCTGGTGGCGTGAGGGCACACCTAAG
AACAAAGATGTGGAATGACGGTCACGAGATTGGCCGTCACGGGGATCCCG
CCACCTTTACGCTAAACTAAATGGTTCAGCCGTATCGCAAGTCCGCCGGG
CACCCACCCGCAAGAAAGGAACACGCGCATTTAAAGACCTCCCCCCCACC
CTCTCGGGCATGCGCTGGCCACCAGTACGCCAGCCCTAGGAGCCCCGCAT
GCTCGGTATTGGAGGAAATAAATGACAGCATGTACAACCTCCGTTGCTCC
TATCTGGTGTTAGTGGTGCAGGTTTTAGGCCCTGGATCGCTCTGTGGGCG
TCGAATCAGAGCTGCCTTCCGACACACTTTAGCTGCGATCGGCCAGGCCA
GCAGCAGCAGACGGCAGCAGCGAGAGTTAGTGCTGTGCGCGAATGCTGGT
GGCGTGAGGGCACACCTAAGAACAAAGATGTGGAATGACGGTCACGAGAT
TGGCCGTCACGGGGATCCCGCCACCTTTACGCTAAACTAA
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