mRNA_L-elsbetiae_contig8332.17340.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8332.17340.1
Unique NamemRNA_L-elsbetiae_contig8332.17340.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig8332.17340.1 vs. uniprot
Match: D7FQI7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQI7_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 7.120e-14
Identity = 33/41 (80.49%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:  181 DNVRDVFRAIRRENLADVKRFLDEGGDIETIGGRFHSTLLT 303
            ++VRD+FRAIRR NLA+VKRFLDEGG++ET+GGRFHSTLLT
Sbjct:   10 EDVRDIFRAIRRGNLAEVKRFLDEGGNVETVGGRFHSTLLT 50
[Close]
BLAST of mRNA_L-elsbetiae_contig8332.17340.1 vs. uniprot
Match: A0A6H5JVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVF4_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.860e-10
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:  172 STDDNVRDVFRAIRRENLADVKRFLDEGGDIETIGGRFHSTLLT 303
            S   N  +  RAIRR NLA+VKRFLDEGG++ET+GGRFHSTLLT
Sbjct:   10 SASVNATERTRAIRRGNLAEVKRFLDEGGNVETVGGRFHSTLLT 53
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8332.17340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQI7_ECTSI7.120e-1480.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JVF4_9PHAE1.860e-1070.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8332contigL-elsbetiae_contig8332:7654..8164 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.3
Seed ortholog evalue3.6e-11
Seed eggNOG ortholog2880.D7FQI7
Preferred nameANKRD42
KEGG koko:K06694,ko:K10329,ko:K17593
Hectar predicted targeting categoryother localisation
EggNOG free text desc.proteasome regulatory particle assembly
EggNOG OGsCOG0666@1,KOG4412@2759
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-01_008830.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03051,ko04121
Exons2
Model size305
Cds size303
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816916.1954205-CDS-L-elsbetiae_contig8332:7653..78561622816916.1954205-CDS-L-elsbetiae_contig8332:7653..7856Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8332 7654..7856 +
1691683909.8758717-CDS-L-elsbetiae_contig8332:7653..78561691683909.8758717-CDS-L-elsbetiae_contig8332:7653..7856Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8332 7654..7856 +
1622816916.2059834-CDS-L-elsbetiae_contig8332:8064..81641622816916.2059834-CDS-L-elsbetiae_contig8332:8064..8164Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8332 8065..8164 +
1691683909.888136-CDS-L-elsbetiae_contig8332:8064..81641691683909.888136-CDS-L-elsbetiae_contig8332:8064..8164Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8332 8065..8164 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8332.17340.1prot_L-elsbetiae_contig8332.17340.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8332 7654..8164 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8332.17340.1

>prot_L-elsbetiae_contig8332.17340.1 ID=prot_L-elsbetiae_contig8332.17340.1|Name=mRNA_L-elsbetiae_contig8332.17340.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
MAAFQTAIYFPPSRRLDLPLHLSDPPSLADARERTGGAGTHLVCSMSRPR
TGNAEAKSTDDNVRDVFRAIRRENLADVKRFLDEGGDIETIGGRFHSTLL
T
back to top

mRNA from alignment at L-elsbetiae_contig8332:7654..8164+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8332.17340.1 ID=mRNA_L-elsbetiae_contig8332.17340.1|Name=mRNA_L-elsbetiae_contig8332.17340.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=511bp|location=Sequence derived from alignment at L-elsbetiae_contig8332:7654..8164+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCAGCCTTCCAAACGGCAATATATTTCCCACCTTCTCGGCGTCTTGA
TCTCCCACTCCACCTGTCTGACCCTCCATCGCTCGCTGATGCAAGAGAGA
GAACAGGAGGGGCTGGTACTCATCTAGTCTGCTCAATGTCTAGACCTCGC
ACCGGTAACGCTGAGGCGAAATCGACAGATGATAATGTTCGGGATGTTTT
CAGGTGTGCCCACAGAGCGTGTACACCAGGTGTACACAGCCCACAGCGCG
TACACTGCCTGTCTGCACGTGAGATAACCGTACATGGATGGTAGATGGGG
ACGGGGTAATATACCGAAGCCTGGCTGCAAGGAAATTCAATTTGTTAGTT
TCCTGAAGACGAGATGCTGTCAGGTATCGTGCCCACACTCCGCGCTCTAT
ACATGCCCCAGGGCGATACGGAGGGAGAATCTCGCTGACGTGAAGCGTTT
TCTCGACGAGGGCGGTGACATCGAAACAATCGGTGGTCGGTTCCATTCGA
CCCTGCTAACG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig8332:7654..8164+

>mRNA_L-elsbetiae_contig8332.17340.1 ID=mRNA_L-elsbetiae_contig8332.17340.1|Name=mRNA_L-elsbetiae_contig8332.17340.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig8332:7654..8164+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCAGCCTTCCAAACGGCAATATATTTCCCACCTTCTCGGCGTCTTGA
TCTCCCACTCCACCTGTCTGACCCTCCATCGCTCGCTGATGCAAGAGAGA
GAACAGGAGGGGCTGGTACTCATCTAGTCTGCTCAATGTCTAGACCTCGC
ACCGGTAACGCTGAGGCGAAATCGACAGATGATAATGTTCGGGATGTTTT
CAGATGGCAGCCTTCCAAACGGCAATATATTTCCCACCTTCTCGGCGTCT
TGATCTCCCACTCCACCTGTCTGACCCTCCATCGCTCGCTGATGCAAGAG
AGAGAACAGGAGGGGCTGGTACTCATCTAGTCTGCTCAATGTCTAGACCT
CGCACCGGTAACGCTGAGGCGAAATCGACAGATGATAATGTTCGGGATGT
TTTCAGGGCGATACGGAGGGAGAATCTCGCTGACGTGAAGCGTTTTCTCG
ACGAGGGCGGTGACATCGAAACAATCGGTGGTCGGTTCCATTCGACCCTG
CTAACGGGCGATACGGAGGGAGAATCTCGCTGACGTGAAGCGTTTTCTCG
ACGAGGGCGGTGACATCGAAACAATCGGTGGTCGGTTCCATTCGACCCTG
CTAACG
back to top