mRNA_L-elsbetiae_contig833.17336.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig833.17336.1
Unique NamemRNA_L-elsbetiae_contig833.17336.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig833.17336.1 vs. uniprot
Match: A0A6H5KP54_9PHAE (CULT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP54_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 2.180e-23
Identity = 54/70 (77.14%), Postives = 60/70 (85.71%), Query Frame = 2 
Query:  338 PLPTAATHSYLGEAT--GSSLSRRDLEVGSTIDMPILSLPGVVLFPGESLPLRLHNPAYALLAESLLGSG 541
            PLPT ATH+YLGEAT   SSLSR+DLE GST+++PIL+LPGVVLFPGESLPLRLHNPAYA L  S LG G
Sbjct:  108 PLPTPATHAYLGEATTGSSSLSRKDLEEGSTVEIPILALPGVVLFPGESLPLRLHNPAYADLVGSFLGGG 177
[Close]
BLAST of mRNA_L-elsbetiae_contig833.17336.1 vs. uniprot
Match: D8LLP2_ECTSI (Protein cereblon n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLP2_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 1.200e-21
Identity = 51/65 (78.46%), Postives = 57/65 (87.69%), Query Frame = 2 
Query:  353 ATHSYLGEAT--GSSLSRRDLEVGSTIDMPILSLPGVVLFPGESLPLRLHNPAYALLAESLLGSG 541
            ATH+YLGEAT   SSLSR+DLE GST+++PIL+LPGVVLFPGESLPLRLHNPAYA L ES LG G
Sbjct:   54 ATHAYLGEATTGSSSLSRKDLEEGSTVEIPILALPGVVLFPGESLPLRLHNPAYADLVESFLGGG 118
[Close]
BLAST of mRNA_L-elsbetiae_contig833.17336.1 vs. uniprot
Match: D8TQU6_VOLCA (CULT domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TQU6_VOLCA)

HSP 1 Score: 54.7 bits (130), Expect = 1.690e-5
Identity = 30/62 (48.39%), Postives = 36/62 (58.06%), Query Frame = 2 
Query:  347 TAATHSYLGEATGSSLSRRDLEVGSTIDMPILSLPGVVLFPGESLPLRLHNPAYALLAESLL 532
            TAA H YLG+        R LE G+T  +P+  L GVVL PGE+LPL LH+P   L  E  L
Sbjct:  102 TAAQHRYLGDVDELGGGSRLLEEGATYTLPLFPLEGVVLLPGENLPLFLHSPQDVLKLERAL 163
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig833.17336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KP54_9PHAE2.180e-2377.14CULT domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LLP2_ECTSI1.200e-2178.46Protein cereblon n=1 Tax=Ectocarpus siliculosus Ta... [more]
D8TQU6_VOLCA1.690e-548.39CULT domain-containing protein n=1 Tax=Volvox cart... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig833contigL-elsbetiae_contig833:25423..25963 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.7
Seed ortholog evalue2.3e-19
Seed eggNOG ortholog2880.D8LLP2
Preferred nameCRBN
KEGG koko:K11793
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007275,GO:0007423,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009653,GO:0009790,GO:0009887,GO:0009888,GO:0009987,GO:0010498,GO:0016567,GO:0019538,GO:0019941,GO:0030163,GO:0031333,GO:0031461,GO:0031464,GO:0031974,GO:0031981,GO:0032092,GO:0032446,GO:0032459,GO:0032460,GO:0032462,GO:0032463,GO:0032501,GO:0032502,GO:0032879,GO:0032991,GO:0033333,GO:0033334,GO:0033339,GO:0034762,GO:0034763,GO:0034765,GO:0034766,GO:0035107,GO:0035113,GO:0035118,GO:0035138,GO:0035239,GO:0035295,GO:0036211,GO:0042471,GO:0042472,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043269,GO:0043271,GO:0043393,GO:0043412,GO:0043496,GO:0043583,GO:0043632,GO:0044087,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0048513,GO:0048519,GO:0048523,GO:0048562,GO:0048568,GO:0048598,GO:0048729,GO:0048731,GO:0048736,GO:0048839,GO:0048856,GO:0050789,GO:0050794,GO:0051049,GO:0051051,GO:0051098,GO:0051099,GO:0051128,GO:0051129,GO:0051603,GO:0060173,GO:0060429,GO:0060562,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0071599,GO:0071600,GO:0071704,GO:0080008,GO:0090073,GO:0090596,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
EggNOG free text desc.proteasome-mediated ubiquitin-dependent protein catabolic process
EggNOG OGsKOG1400@1,KOG1400@2759
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Exons1
Model size541
Cds size336
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816916.0108452-UTR-L-elsbetiae_contig833:25422..256271622816916.0108452-UTR-L-elsbetiae_contig833:25422..25627Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig833 25423..25627 +
1691683909.7337646-UTR-L-elsbetiae_contig833:25422..256271691683909.7337646-UTR-L-elsbetiae_contig833:25422..25627Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig833 25423..25627 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816916.0241666-CDS-L-elsbetiae_contig833:25627..259631622816916.0241666-CDS-L-elsbetiae_contig833:25627..25963Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig833 25628..25963 +
1691683909.7523673-CDS-L-elsbetiae_contig833:25627..259631691683909.7523673-CDS-L-elsbetiae_contig833:25627..25963Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig833 25628..25963 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig833.17336.1prot_L-elsbetiae_contig833.17336.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig833 25628..25963 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig833.17336.1

>prot_L-elsbetiae_contig833.17336.1 ID=prot_L-elsbetiae_contig833.17336.1|Name=mRNA_L-elsbetiae_contig833.17336.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
MDGWEEGANPPPPQANAQNSGSGSSGSSSGIFSVTSSTAAPALMPLPTAA
THSYLGEATGSSLSRRDLEVGSTIDMPILSLPGVVLFPGESLPLRLHNPA
YALLAESLLGSG
back to top

mRNA from alignment at L-elsbetiae_contig833:25423..25963+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig833.17336.1 ID=mRNA_L-elsbetiae_contig833.17336.1|Name=mRNA_L-elsbetiae_contig833.17336.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=541bp|location=Sequence derived from alignment at L-elsbetiae_contig833:25423..25963+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGAGGTTGCCGTTAGCACACCATCCACACGCACACACTCCAAATACA
AGGTTGAACTTGGTTGAACACAGCATTTTGGACCCTCTCCTAGTAGTCTT
CGACCACGTCGTGTCCCGATACTGCTGCTGTTCTACAATAGCTGCTCAGG
GAGAAGGAGAGGCTACTCCGGCAACGCAGTTGACGACGGTCAAGCCCGTG
GCAGGATGGATGGCTGGGAAGAAGGTGCGAATCCACCACCACCGCAGGCC
AACGCCCAAAATAGCGGCAGCGGCAGCAGCGGCAGCAGCAGCGGGATATT
CTCTGTGACATCGTCAACGGCAGCTCCAGCGTTGATGCCCTTGCCCACCG
CGGCGACGCACTCTTATCTCGGAGAGGCTACCGGTTCGTCTCTGTCGAGG
AGGGACTTGGAGGTGGGCTCGACGATTGACATGCCCATTCTGTCCCTTCC
AGGCGTGGTGCTATTTCCTGGCGAGTCGTTGCCATTGAGATTACACAATC
CAGCCTATGCTTTGCTGGCGGAATCTTTGCTTGGAAGCGGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig833:25423..25963+

>mRNA_L-elsbetiae_contig833.17336.1 ID=mRNA_L-elsbetiae_contig833.17336.1|Name=mRNA_L-elsbetiae_contig833.17336.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig833:25423..25963+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGATGGCTGGGAAGAAGGTGCGAATCCACCACCACCGCAGGCCAACGC
CCAAAATAGCGGCAGCGGCAGCAGCGGCAGCAGCAGCGGGATATTCTCTG
TGACATCGTCAACGGCAGCTCCAGCGTTGATGCCCTTGCCCACCGCGGCG
ACGCACTCTTATCTCGGAGAGGCTACCGGTTCGTCTCTGTCGAGGAGGGA
CTTGGAGGTGGGCTCGACGATTGACATGCCCATTCTGTCCCTTCCAGGCG
TGGTGCTATTTCCTGGCGAGTCGTTGCCATTGAGATTACACAATCCAGCC
TATGCTTTGCTGGCGGAATCTTTGCTTGGAAGCGGGATGGATGGCTGGGA
AGAAGGTGCGAATCCACCACCACCGCAGGCCAACGCCCAAAATAGCGGCA
GCGGCAGCAGCGGCAGCAGCAGCGGGATATTCTCTGTGACATCGTCAACG
GCAGCTCCAGCGTTGATGCCCTTGCCCACCGCGGCGACGCACTCTTATCT
CGGAGAGGCTACCGGTTCGTCTCTGTCGAGGAGGGACTTGGAGGTGGGCT
CGACGATTGACATGCCCATTCTGTCCCTTCCAGGCGTGGTGCTATTTCCT
GGCGAGTCGTTGCCATTGAGATTACACAATCCAGCCTATGCTTTGCTGGC
GGAATCTTTGCTTGGAAGCGGG
back to top