mRNA_L-elsbetiae_contig833.17335.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig833.17335.1
Unique NamemRNA_L-elsbetiae_contig833.17335.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig833.17335.1 vs. uniprot
Match: D8LLP4_ECTSI (Leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP4_ECTSI)

HSP 1 Score: 374 bits (959), Expect = 5.830e-121
Identity = 236/296 (79.73%), Postives = 243/296 (82.09%), Query Frame = 2
Query:  455 MGNKGSSHSSTLSRGQGATSDIRDALASLPGGAPTNKTGRTVTAQKMKTAGATGVLALQEHGLKEVPEGLFLLVKLRTLNMSSNXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSALSSLTDLSAGGNRLTGAGALGALPACLTKLVLRENSLGEVPLAVLGGLPALQVLDLSANSIEGLPPFAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSARSNRIAAVDPFSGQQAISRRLFADSTVESLELAGNVMDKTDLMRMEGVDAFLARREKNKNKNLQGGGMLTLSVCGLD 1342
            MGNK SSHSST SRGQGATSD RDAL SLPG AP NKTGR VTAQKMKTAGATGVLALQEHGLKE+PEGLF LVKLRTLNM+S XXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSALSSLTD+SAG N+L GAGALGALPACL KLVLR+N LGEVP AVL GLPALQVLDLSAN IEGLPPF A                               S RSNRIAAVDPFSGQQ+ISR LFADS VESLELAGN +DKTDLMRMEGVD FLARREKNKNKNLQGGGMLTLSVCGLD
Sbjct:    1 MGNKESSHSSTFSRGQGATSDFRDALTSLPGSAPKNKTGRKVTAQKMKTAGATGVLALQEHGLKEIPEGLFTLVKLRTLNMASXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSALSSLTDVSAGSNQLAGAGALGALPACLKKLVLRDNRLGEVPAAVLDGLPALQVLDLSANGIEGLPPFGATLPALEELILDENSLRALGDELVGLSKLKKLSVRSNRIAAVDPFSGQQSISRGLFADSAVESLELAGNALDKTDLMRMEGVDDFLARREKNKNKNLQGGGMLTLSVCGLD 296          
BLAST of mRNA_L-elsbetiae_contig833.17335.1 vs. uniprot
Match: A0A225UJM0_9STRA (Putative LRR protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UJM0_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.350e-23
Identity = 143/271 (52.77%), Postives = 170/271 (62.73%), Query Frame = 2
Query:  563 KTGRTVTAQKMKTAGATGVLALQEHGLKEVPEGLFLLVKLRTLNMSSNXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSALSSLTDLSAGGNRLTGAGALGALPACLTKLVLRENSLGEVPLAVLGGLPALQVLDL------------SANSIEGLPPFAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSARSNRIAAVDPFSGQQAISRRLFADSTVESLELAGNVMDKTDLMRMEGVDAFLARREKNKNKNLQGGGMLTLSVCGL 1339
            K  R+V  QK+K+A ATGVLAL    LK++P+ L+ L  LR+L++S  XXXXXXXXXXXXXXXXXXXXXXXX   +PDLS L +LT L   GN L       ALP  L KL L+ N L  VP ++L  L  LQ LDL            S N+++ LP        XXXXXXXXXXXXXXXXXXXXXXXXXXXSAR N +      +  Q I+ +L  DS V+ + L GN M K DL  M+G DAFL RR K KNK + GG    LS+CGL
Sbjct:   20 KNSRSVQQQKLKSAKATGVLALPNSKLKKLPDELWQLSTLRSLDLSXXXXXXXXXXXXXXXXXXXXXXXXXXLAALPDLSPLQALTTLVLDGNVLEDLPL--ALPPNLIKLSLKGNKLRAVPRSILS-LVHLQELDLIXXXXXXXXXXXSDNALDLLPANLGEMQEXXXXXXXXXXXXXXXXXXXXXXXXXXXSARRNSLVGKSAGAKTQPIAAQLLQDSAVQVMNLDGNPMTKEDLQAMDGFDAFLTRRTKLKNKEIHGGLNSDLSLCGL 287          
BLAST of mRNA_L-elsbetiae_contig833.17335.1 vs. uniprot
Match: A0A5D6XNJ4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XNJ4_9STRA)

HSP 1 Score: 106 bits (264), Expect = 8.830e-22
Identity = 117/285 (41.05%), Postives = 144/285 (50.53%), Query Frame = 2
Query:  497 GQGATS--DIRDALASLPGGAPTNKTGRTVTAQKMKTAGATGVLALQEHGLKEVPEGLFLLVKLRTLNMSSNXXXXXXXXXXXXXXXXXXXXXXXXXXX-IPDLSALSSLTDLSAGGNRLTGAGALGALPACLTKLVLRENSLGEVPLAVLGGLPALQVLDLSANSIEGLPPFAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSARSNRIAAVDPFSGQQAISRRLFADSTVESLELAGNVMDKTDLMRMEGVDAFLARREKNKNKNLQGGGMLTLSVCGLD 1342
            GQ AT   + R A  S P      K  R+V  QK+K+A ATGVLAL +H LK++P  L  L  LR+L++SSN                            +PDLSAL+                   ALP  LTKL L+ N L E+PL+V   L  LQ LD+S N +  LP           XXXXXXXXXXXXXXXXXXXXXXXX     R+       G   I+R +  DS V  + L GN M K DL  M+G + FL RR + KNK + GG    +S+CGLD
Sbjct:    2 GQAATKAQEARAAAKSRP------KQTRSVLQQKLKSAAATGVLALPDHKLKQLPRELLELANLRSLDVSSNRLAELPRDFAAALPQLRTLKLAGNALTALPDLSALTXXXXXXXXXXXXXXXXE--ALPPNLTKLSLKNNRLRELPLSVTR-LAQLQELDVSGNELAALPEHVGALASLVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRL-------GPHGIAREVLTDSGVHIMNLEGNPMSKFDLEAMDGFERFLERRTQAKNKEIHGGLSADVSLCGLD 270          
BLAST of mRNA_L-elsbetiae_contig833.17335.1 vs. uniprot
Match: H3GRI1_PHYRM (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=H3GRI1_PHYRM)

HSP 1 Score: 100 bits (250), Expect = 7.170e-20
Identity = 135/261 (51.72%), Postives = 159/261 (60.92%), Query Frame = 2
Query:  563 KTGRTVTAQKMKTAGATGVLALQEHGLKEVPEGLFLLVKLRTLNMSSNXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSALSSLTDLSAGGNRLTGAGALGALPACLTKLVLRENSLGEVPLAVLGGLPALQVLDLSANSIEGLPPFAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSARSNRIAAVDPFSGQQAISRRLFAD-STVESLELAGNVMDKTDLMRMEGVDAFLARREKNKNKNLQGGGMLTLSVCGLD 1342
            K  R+V  QK+++A ATGVLAL    LK++PE L  L  LRTL++   XXXXXXXXXXXXXXXXXXXXXXX    +PDLSAL +LT L   GN L    +  ALP  LTKL L+ N L  VP +VL  L  LQ                 XXXXXXXXXXXXXXXXXXXXXXXXXX     SAR N +      +  Q I+  L  + S V+ + L GN + K DL  M+G DAFL RR K KNK + GG    LS+CGL+
Sbjct:   20 KNNRSVQQQKLRSAKATGVLALPNSKLKKLPEELLELSTLRTLDLXXXXXXXXXXXXXXXXXXXXXXXXXXVLVTLPDLSALEALTTLVLDGNLLEDIPS--ALPPNLTKLSLKGNRLRAVPRSVLE-LAQLQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLKVLSARRNTLVGRSAGAKVQPIAAELLGEGSAVQVMNLEGNPLTKEDLQGMDGFDAFLTRRTKLKNKEIHGGLNSDLSLCGLE 277          
BLAST of mRNA_L-elsbetiae_contig833.17335.1 vs. uniprot
Match: A0A6G0WCG6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WCG6_9STRA)

HSP 1 Score: 100 bits (249), Expect = 7.300e-20
Identity = 110/259 (42.47%), Postives = 144/259 (55.60%), Query Frame = 2
Query:  566 TGRTVTAQKMKTAGATGVLALQEHGLKEVPEGLFLLVKLRTLNMSSNXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSALSSLTDLSAGGNRLTGAGALGALPACLTKLVLRENSLGEVPLAVLGGLPALQVLDLSANSIEGLPPFAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSARSNRIAAVDPFSGQQAISRRLFADSTVESLELAGNVMDKTDLMRMEGVDAFLARREKNKNKNLQGGGMLTLSVCGLD 1342
            T ++V AQK++ A ATG+L+L+   LK++P  +F +  L TL++S N                           +PDLSAL  LT L+A  N LT    +GAL   LTKL LR N L  +P +V   L AL+ LD++            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AR N +       G Q+ +      S V  ++L GN + K DL  M+G  AF+ RR+  K+K + GG    +S+CGLD
Sbjct:   16 TKKSVQAQKIERARATGILSLKGCKLKQIPADVFAIPTLHTLDLSQNAITELPPQITELTALKTLKVDGNQLVELPDLSALVKLTTLAADNNTLTR---IGALAPNLTKLTLRGNKLTTLPESVCT-LTALETLDVAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFARHNEL-------GPQSFAPEFLHGSAVNVMQLEGNPLTKLDLEAMDGAQAFMERRKILKDKEIHGGLSTDVSLCGLD 263          
BLAST of mRNA_L-elsbetiae_contig833.17335.1 vs. uniprot
Match: A0A662XQF7_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XQF7_9STRA)

HSP 1 Score: 100 bits (250), Expect = 8.880e-20
Identity = 143/268 (53.36%), Postives = 166/268 (61.94%), Query Frame = 2
Query:  563 KTGRTVTAQKMKTAGATGVLALQEHGLKEVPEGLFLLVKLRTLNMSSNXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSALSSLTD-------LSAGGNRLTGAGALGALPACLTKLVLRENSLGEVPLAVLGGLPALQVLDLSANSIEGLPPFAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSARSNRIAAVDPFSGQQAISRRLFAD-STVESLELAGNVMDKTDLMRMEGVDAFLARREKNKNKNLQGGGMLTLSVCGLD 1342
            K  R V  QK++TA ATGVLAL +  LK++P+ LF L  LR+L+    XXXXXXXXXXXXXXXXXXXXXXXX   +PDLSAL++LT        L   GN L       ALP  LTKL L+ N L  VP +++  L  L+                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAR N +        +Q I+  L  D STV+ L L GN M K DL  MEG DAFL RR + KNK + GG    LS+CGLD
Sbjct:   24 KNSRGVQQQKLRTARATGVLALPDSKLKKLPDELFTLSALRSLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXIATLPDLSALTALTTVRVLCLKLVLDGNALEDLP--NALPPNLTKLSLKGNRLRTVPHSIVA-LTQLREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSARRNTLVGRSAGGSEQPIAAELLGDGSTVQVLNLEGNPMTKEDLQTMEGFDAFLTRRTQLKNKEIHGGLNSDLSLCGLD 288          
BLAST of mRNA_L-elsbetiae_contig833.17335.1 vs. uniprot
Match: A0A6A3UTM1_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3UTM1_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.310e-19
Identity = 142/261 (54.41%), Postives = 164/261 (62.84%), Query Frame = 2
Query:  563 KTGRTVTAQKMKTAGATGVLALQEHGLKEVPEGLFLLVKLRTLNMSSNXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSALSSLTDLSAGGNRLTGAGALGALPACLTKLVLRENSLGEVPLAVLGGLPALQVLDLSANSIEGLPPFAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSARSNRIAAVDPFSGQQAISRRLFA-DSTVESLELAGNVMDKTDLMRMEGVDAFLARREKNKNKNLQGGGMLTLSVCGLD 1342
            KTGR+V  QK+K+A ATGVLAL    LK++PE L  L  +RT      XXXXXXXXXXXXXXXXXXXXXXXXX  +PDLS L +LT L    N L       ALP  LTKL ++ N L  VP +VL  L  LQ                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAR N +      +  Q+I+  L   DS+V+ + L GN M K DL  M+G DAFL RR K KNK + GG    LS+CGL+
Sbjct:   20 KTGRSVQQQKLKSAKATGVLALPNSKLKKLPEELLELSAMRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSLPDLSGLEALTTLVLDCNMLEDIP--NALPPNLTKLSIKGNKLRAVPRSVLE-LAQLQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSARRNTLVGRSAGAKVQSIAAELLGEDSSVQVMNLEGNPMTKEDLQGMDGFDAFLTRRTKLKNKEIHGGLNSDLSLCGLE 277          
BLAST of mRNA_L-elsbetiae_contig833.17335.1 vs. uniprot
Match: K3X5X7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X5X7_GLOUD)

HSP 1 Score: 99.4 bits (246), Expect = 2.410e-19
Identity = 138/261 (52.87%), Postives = 168/261 (64.37%), Query Frame = 2
Query:  563 KTGRTVTAQKMKTAGATGVLALQEHGLKEVPEGLFLLVKLRTLNMSSNXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSALSSLTDLSAGGNRLTGAGALGALPACLTKLVLRENSLGEVPLAVLGGLPALQVLDLSANSIEGLPPFAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSARSNRIAAVDPFS-GQQAISRRLFADSTVESLELAGNVMDKTDLMRMEGVDAFLARREKNKNKNLQGGGMLTLSVCGLD 1342
            K  ++V  QK+K+A ATG+LAL +H LK+VP  +  +  LRTL+    XXXXXXXXXXXXXXXXXXXXXXXXXX +PDLS L  LT L   GN L    +  ALP  LTKL L  N L E+P+AV   L  L+ L               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AR+N++   +  +   Q+I+  L + S V  + L GN M K DL  M+G D F ARR ++KNK + GG    +S+CGLD
Sbjct:   20 KQSKSVMQQKIKSAQATGMLALSDHKLKKVPPEVVAMPLLRTLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLPDLSGLVGLTTLVLDGNALECIPS--ALPPNLTKLSLMGNKLREIPVAVTN-LKLLKELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARANKLTGKEAAAPAPQSIAAELLSASNVHIMNLEGNPMTKFDLEDMDGFDKFFARRTESKNKEIHGGLNADVSLCGLD 277          
BLAST of mRNA_L-elsbetiae_contig833.17335.1 vs. uniprot
Match: A0A7S2EAS0_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EAS0_TRICV)

HSP 1 Score: 99.0 bits (245), Expect = 2.780e-19
Identity = 84/269 (31.23%), Postives = 112/269 (41.64%), Query Frame = 2
Query:  587 QKMKTAGATGVLALQEHGLKEVPEGLFLLVKLRTLNMSSNXXXXXXXXXXXXXXXXXXXXXXXXXXX--IPDLSALSSLTDLSAGGNRLTGAGA-----------LGALPACLTKLVLRENSLGEVPLAVLG-GLPALQVLDLSANSIEGLPPFAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSARSNRI---AAVDPFSGQQAISRRLFADSTVESLELAGNVMDKTDLMRMEGVDAFLARREKNKNKNLQGGGMLTLSVCGLD 1342
            QK++TA  TG+L+L+EH L +VP+ ++ L  LRTL++S N                             +  +S LS L  LSAGGNRL                L +LP  L +L L  N    VP  +    L  L+ LDLS N +  +P   A                               S R+N I   + V      Q I   LF ++ V  L L GN M  T L   +G   FL RR K KNKN+ GG +  L+VCGL+
Sbjct:    1 QKIETAQKTGILSLREHKLDDVPDSVYELSNLRTLDLSKNNLTVLGRNLVNLANLKSLNCDSNKLQPGSLAPVSRLSKLQTLSAGGNRLGEPSRTEGPSQPQPEPLPSLPVSLKQLKLDTNFFSSVPPQICNPSLVKLEKLDLSFNFLATIPAGIAYLTSLVDINLDSNSIVSLPEEIGQLKKLKALSLRNNHIQVHSTVFSEKNPQPIPESLFTNTLVIDLNLHGNKMTNTQLNDFQGFHFFLERRTKVKNKNVYGGALTDLNVCGLE 269          
BLAST of mRNA_L-elsbetiae_contig833.17335.1 vs. uniprot
Match: A0A067D9M8_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067D9M8_SAPPC)

HSP 1 Score: 97.1 bits (240), Expect = 1.150e-18
Identity = 135/259 (52.12%), Postives = 169/259 (65.25%), Query Frame = 2
Query:  566 TGRTVTAQKMKTAGATGVLALQEHGLKEVPEGLFLLVKLRTLNMSSNXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSALSSLTDLSAGGNRLTGAGALGALPACLTKLVLRENSLGEVPLAVLGGLPALQVLDLSANSIEGLPPFAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSARSNRIAAVDPFSGQQAISRRLFADSTVESLELAGNVMDKTDLMRMEGVDAFLARREKNKNKNLQGGGMLTLSVCGLD 1342
            T ++V A K++ A ATG+L+L    LK +P+ +F + KL TL++S+N  XXXXXXXXXXXXXXXXXXXXXXXXX+PDLSAL+ LT+L    N+L     L ALP  LTKL  R N L  +P   L  L  L+ +D+S            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      +       G Q+I+  + A S V  ++L GN M K DL  M+GVDAFL RR++ K+K L GG    +++CGLD
Sbjct:   17 TKKSVQATKIERAKATGILSLHGCKLKRIPDDVFGIEKLNTLDLSNNELXXXXXXXXXXXXXXXXXXXXXXXXXLPDLSALTKLTNLVLDNNKLA---TLQALPMGLTKLSARNNQLLALP-PTLCCLSQLESVDVSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL-------GPQSIAASILAASAVHIMQLEGNPMSKFDLEAMDGVDAFLLRRKELKDKELHGGLNTDVTLCGLD 264          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig833.17335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLP4_ECTSI5.830e-12179.73Leucine rich repeat protein n=2 Tax=Ectocarpus Tax... [more]
A0A225UJM0_9STRA1.350e-2352.77Putative LRR protein n=1 Tax=Phytophthora megakary... [more]
A0A5D6XNJ4_9STRA8.830e-2241.05Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
H3GRI1_PHYRM7.170e-2051.72Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A6G0WCG6_9STRA7.300e-2042.47Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A662XQF7_9STRA8.880e-2053.36Uncharacterized protein (Fragment) n=2 Tax=Nothoph... [more]
A0A6A3UTM1_9STRA1.310e-1954.41Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
K3X5X7_GLOUD2.410e-1952.87Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S2EAS0_TRICV2.780e-1931.23Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A067D9M8_SAPPC1.150e-1852.12Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig833contigL-elsbetiae_contig833:17965..21892 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score376.3
Seed ortholog evalue1.3e-101
Seed eggNOG ortholog2880.D8LLP4
Preferred nameLRRC57
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionLeucine rich repeat protein
Ec32 orthologEc-04_004990.1
Exons6
Model size2271
Cds size891
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig833.17335.1prot_L-elsbetiae_contig833.17335.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig833 18419..20966 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816915.8952384-UTR-L-elsbetiae_contig833:17964..184181622816915.8952384-UTR-L-elsbetiae_contig833:17964..18418Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig833 17965..18418 +
1691683909.6281323-UTR-L-elsbetiae_contig833:17964..184181691683909.6281323-UTR-L-elsbetiae_contig833:17964..18418Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig833 17965..18418 +
1622816915.9798307-UTR-L-elsbetiae_contig833:20966..218921622816915.9798307-UTR-L-elsbetiae_contig833:20966..21892Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig833 20967..21892 +
1691683909.718604-UTR-L-elsbetiae_contig833:20966..218921691683909.718604-UTR-L-elsbetiae_contig833:20966..21892Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig833 20967..21892 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816915.9058552-CDS-L-elsbetiae_contig833:18418..185371622816915.9058552-CDS-L-elsbetiae_contig833:18418..18537Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig833 18419..18537 +
1691683909.6416502-CDS-L-elsbetiae_contig833:18418..185371691683909.6416502-CDS-L-elsbetiae_contig833:18418..18537Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig833 18419..18537 +
1622816915.9161658-CDS-L-elsbetiae_contig833:18789..189011622816915.9161658-CDS-L-elsbetiae_contig833:18789..18901Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig833 18790..18901 +
1691683909.653916-CDS-L-elsbetiae_contig833:18789..189011691683909.653916-CDS-L-elsbetiae_contig833:18789..18901Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig833 18790..18901 +
1622816915.9341874-CDS-L-elsbetiae_contig833:19316..194151622816915.9341874-CDS-L-elsbetiae_contig833:19316..19415Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig833 19317..19415 +
1691683909.6650574-CDS-L-elsbetiae_contig833:19316..194151691683909.6650574-CDS-L-elsbetiae_contig833:19316..19415Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig833 19317..19415 +
1622816915.9458177-CDS-L-elsbetiae_contig833:19571..197481622816915.9458177-CDS-L-elsbetiae_contig833:19571..19748Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig833 19572..19748 +
1691683909.6767626-CDS-L-elsbetiae_contig833:19571..197481691683909.6767626-CDS-L-elsbetiae_contig833:19571..19748Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig833 19572..19748 +
1622816915.9597535-CDS-L-elsbetiae_contig833:20275..204701622816915.9597535-CDS-L-elsbetiae_contig833:20275..20470Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig833 20276..20470 +
1691683909.6889615-CDS-L-elsbetiae_contig833:20275..204701691683909.6889615-CDS-L-elsbetiae_contig833:20275..20470Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig833 20276..20470 +
1622816915.9699254-CDS-L-elsbetiae_contig833:20777..209661622816915.9699254-CDS-L-elsbetiae_contig833:20777..20966Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig833 20778..20966 +
1691683909.7043855-CDS-L-elsbetiae_contig833:20777..209661691683909.7043855-CDS-L-elsbetiae_contig833:20777..20966Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig833 20778..20966 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig833.17335.1

>prot_L-elsbetiae_contig833.17335.1 ID=prot_L-elsbetiae_contig833.17335.1|Name=mRNA_L-elsbetiae_contig833.17335.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=297bp
MGNKGSSHSSTLSRGQGATSDIRDALASLPGGAPTNKTGRTVTAQKMKTA
GATGVLALQEHGLKEVPEGLFLLVKLRTLNMSSNSLKLLPSTINTLTKLK
TLRLDANRLEAIPDLSALSSLTDLSAGGNRLTGAGALGALPACLTKLVLR
ENSLGEVPLAVLGGLPALQVLDLSANSIEGLPPFAAGLPALVELILDENS
LRALGDELVGLSKLKKLSARSNRIAAVDPFSGQQAISRRLFADSTVESLE
LAGNVMDKTDLMRMEGVDAFLARREKNKNKNLQGGGMLTLSVCGLD*
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mRNA from alignment at L-elsbetiae_contig833:17965..21892+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig833.17335.1 ID=mRNA_L-elsbetiae_contig833.17335.1|Name=mRNA_L-elsbetiae_contig833.17335.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3928bp|location=Sequence derived from alignment at L-elsbetiae_contig833:17965..21892+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGTTTCAGAGAACCTTCCACGCTTTGGGATTCTGCATTGAATTTGTGC AGGAGATACCCCGTGGCCAAGGGCGGGGTACAGCACTCGTTGAGTTTGGG GTGCCTCCCCCCCAAAAAAAGCTGAACCTGGTATCCTCGACCCAGCGTGG AGTGTACCCGAAAATGGCTTCTCCGACTCCGGAAAATTGACCAAAACGGG TACTCCTCGTCCCTATTGCGCCGCTTAAAGTAGCTATTACATAGCTCCGC CTCCGAGCAAGGCGAGAGCAGGGATACAGGCCACAAACAGGACCAGAAGG CTCGACAACTGTATCTTGGGTTTCACCTTTGCAGAAGTTCACGATCGGAT TGGCGAGGCAAACACGCGCGAACACAACAGACTCACCGACTTGAACTTTG GTCAGCGGAGAAGGTTGCGTGCAACAGCAGCAGTACTCGCGACGATCAAG CAGCATGGGCAATAAAGGGTCGTCACATTCTTCCACCTTGTCAAGGGGCC AGGGCGCAACATCCGATATTCGGGATGCGTTGGCGAGCTTGCCTGGTGGC GCACCTACGAACAAGACCGGCAGGTATATATCTGATGTACGCAACAACTG GCACGGCGGTGTTCCGTTCGCAGCAGCCCAGCAGTTGTGCAGGAGAGAGA GAGAAGGAGGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGAGAGAGAGAGAGAGAACTCCTGTATACCTATCTACACATACAAC AATAGTAATCCTCCGAGTCCATGATAAAATCGAAGACACCTATGTATGTA CCTACGCTTTGCATTCGATCGGTAGGACGGTGACGGCCCAAAAGATGAAG ACGGCGGGAGCCACGGGCGTGTTGGCGCTGCAAGAGCATGGCCTCAAGGA GGTCCCCGAGGGTTTGTTTCTGCTCGTCAAGCTTCGGGTGAGAGGGACGG GGGAGAGACTGCATGCAGTGAGCAACGCGTGTTTGTGAAAACCATGAAGG TGGCCGGGGCCTTGTTGTGACAACGGTAAAGGAGGCATGCGTAAAGTACA TGGAGGAATATCTACACCTTCTGCACACGCATGTGGGCAGCCACACCCCA AATGACCGTGCCGACTTTGAGAGCGCTTGGTTTGACGCCGACGTCTAATA GAAGATGTACCAGTTTCAATCACTACGTCTGTTTCTACGCGAGTTGCCAC ACTCGGCGGCTTTATACCAGAAACGCTGCACCAGTGTGTCGGAGTTCAAA CCCCCTCCTTAATCGCGGCACCCACGGGCTGGCTGCCGCTGCTGCTGCTG CTGCTGCTGCTGCTGCTGTTTCTGATACATGTGGATTATCGCTCTTTCGC AGACGTTAAACATGTCGTCGAACTCTCTGAAGCTCTTGCCATCGACGATC AACACTCTGACCAAGCTCAAGACACTGCGGCTCGATGCCAACAGACTCGA GGTGCGGGCAAAGTGCTCGTTTTTTTGTTTTTTCTCCTAGATTTGTTGTG TAAGTTTCGACACGACCCAGGTGTACTTATCTACATAACAAACTCCGCTG AAAAATGGCGGCGATGAGCGCCCTGACGCCTGATCTCTGCGCGCCCGTAC GCCTCAGGCAATTCCTGACCTGAGCGCGCTGTCTTCCCTGACGGACCTCT CCGCGGGGGGGAACCGTCTCACGGGGGCCGGCGCGCTTGGCGCACTGCCT GCGTGCTTGACCAAGTTAGTACTGAGAGAAAACAGCCTGGGGGAGGTGCC GCTAGCGGTGCTCGGAGGTCTACCCGCTCTGCAGGTGTGTGGGTGGGGTG TTGCCCGTTTGCTGCCGCTATATGCCTGCGGTGTTTTGTGTGCCGCTTGG ATGCCCTAGATTCCGTGCCTGGACCTCACCGGACGGAGAAGACCGTGTGT AGTCGCAAATCTTCAGGACTACGCCCCACTGAATATTTCCGGCCGCGTGG CGTGCCTCAAGTATCAGGCTTGTTCGAAGTGCCTTACCGTGGTCGTGTGC ACATGCGCACAGTAGTGAAAGGGCCGTATTGTGTATCCCAGGGTGTTGAC TATATGTTGTTCTGGGGATGTGTCGTTTTGCGGAGCTATTTACACCAGGT TGTCATGTCACACAAGGATTCCACAAGACCTGTGCGGCGGCGGAAACCGC CAACACCACTTTCTGCCGCCCGAATTGGAGTGCCCCGAACAGCTCCCGAC GCTTGCAGTTTCTGGCACTCCGAGATACCAGCAGCAACAACAGCAGTTTC TTCGCGAGTGGAGTTTGACATTTTTTTCGCGCTGCAATATTTTGTTGTTT TCTTTTCTCAGGTGCTTGACCTGTCAGCGAACTCGATCGAGGGCCTTCCG CCCTTCGCAGCCGGTTTGCCGGCCTTGGTGGAGCTTATCCTCGACGAGAA CTCCTTGCGAGCGTTGGGGGACGAGCTGGTGGGTCTGTCGAAGCTCAAGA AACTCTCGGCGAGGTCTAACCGTATCGCGGCGGTTGACCCTTTCAGCGGG CAGCAGGTATGTATGTCTTTTGAGTTTTGTAGTTGCTGCACTAAAGCATT GATAACGGCAGGCGTATTTCAAAGAGTACGTGTAGACGGACATCAACTTG GTCCAAACAGCGTCCCCGCACTCAGCTTCTCTTTCTCGGAGCACTTCACT GCTTGGGTGGTTGGTTTCGGGCGAGTTCACCTGGGGAACATAGTACCAGA GCAGGAGTATCGCCCCCATCACGGCCTTAACACAAGTATACTTCAGGCAA TCCAACGCCACAAAACCACGTGTGCCGTTTTGCATGTCTTGAAATCTCAC GGTAAAAAAATAGGCAATCTCTCGAAGGCTGTTTGCCGATTCTACGGTGG AGTCCCTGGAGCTCGCAGGCAACGTCATGGACAAGACGGACCTGATGCGG ATGGAAGGGGTGGACGCTTTCCTGGCTCGCAGAGAAAAAAACAAGAACAA GAACCTGCAGGGCGGCGGGATGCTGACGCTCTCCGTCTGCGGCCTTGACT GATTTTGTCCGCCTGTTTTAACGCTGTACATTTCGAGGAGAAGACCTCGA AGGGTGTTTTGACGCTTTCTAACTTTGCAGCCTCGTTATGTATGTACAAA TGCTTTGTATACGTCCAAGCCCTTTTACCTAGAACCAGGGCCTAGTGGAA ACCACCGGTCTCTCCTTTTTCTTCTTTCACTCCTGCACCAAGACAGGCTG TTCTCCTGGACGCCTTTTGGGTAAATGTTCCATGCTGCACGCAAATTCAT GTGAAGCATCTTTGGTGGCCACGAGTTTTTTTTGGTGTGCGGCACATATT CGGCGGGCGACACAGCAGTCGCTGTTGTCAAGGTCCAGGGTTTTGACGCT TTTTTTGTACGGAAGCCGCAAGCGACACCCTATGTGACGTTCCTCTCTCC CCAACCTAGTTGCAACTCTAACCTTCGAGTCCGTGGTTTTCTCGGTTTAC AAGAGCTGGGGTTTGGTACGAGCGTCTTTTGCGCTTCCACCCCACACTCA GGCCCTTTATCCTGCCCGTGTTTCTTGGGGCCCTACCACTGCATGTACGA CTTGAAATATCGCGATTTGGCGTGGAATGCACTACTGTAGAGTTGGTGCC ATTTCTGGGCACACTCGCTAGATCTGAAGGCACTTTTGGCGTGGACCATC CCTGCGTTAGGTTTCCGAGCAGCAGATTGTCGTTTGTGCAGGGTTAAAAG ATGCGCGCGCGTTGGCTCCTTCCTCCTACATGCAGGCGGTACACTTCCTG TTCGTGTGTTCGCCATCTCTAGTGTACTCGCCATCTCCGGAGCGCACCCT GCTCGTGTGGACAAGACCCATGGCAGGTTTAAGCGTGCACCGGATCCACG GCCGTGTTGAGTTTTCTTGAAAGCGAAACGCCACTGAACGCTTTCTTGAG CAAACAAAGTTTCACTGTCGGGGAGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig833:17965..21892+

>mRNA_L-elsbetiae_contig833.17335.1 ID=mRNA_L-elsbetiae_contig833.17335.1|Name=mRNA_L-elsbetiae_contig833.17335.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1782bp|location=Sequence derived from alignment at L-elsbetiae_contig833:17965..21892+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCAATAAAGGGTCGTCACATTCTTCCACCTTGTCAAGGGGCCAGGG
CGCAACATCCGATATTCGGGATGCGTTGGCGAGCTTGCCTGGTGGCGCAC
CTACGAACAAGACCGGCAGATGGGCAATAAAGGGTCGTCACATTCTTCCA
CCTTGTCAAGGGGCCAGGGCGCAACATCCGATATTCGGGATGCGTTGGCG
AGCTTGCCTGGTGGCGCACCTACGAACAAGACCGGCAGGACGGTGACGGC
CCAAAAGATGAAGACGGCGGGAGCCACGGGCGTGTTGGCGCTGCAAGAGC
ATGGCCTCAAGGAGGTCCCCGAGGGTTTGTTTCTGCTCGTCAAGCTTCGG
GACGGTGACGGCCCAAAAGATGAAGACGGCGGGAGCCACGGGCGTGTTGG
CGCTGCAAGAGCATGGCCTCAAGGAGGTCCCCGAGGGTTTGTTTCTGCTC
GTCAAGCTTCGGACGTTAAACATGTCGTCGAACTCTCTGAAGCTCTTGCC
ATCGACGATCAACACTCTGACCAAGCTCAAGACACTGCGGCTCGATGCCA
ACAGACTCGAGACGTTAAACATGTCGTCGAACTCTCTGAAGCTCTTGCCA
TCGACGATCAACACTCTGACCAAGCTCAAGACACTGCGGCTCGATGCCAA
CAGACTCGAGGCAATTCCTGACCTGAGCGCGCTGTCTTCCCTGACGGACC
TCTCCGCGGGGGGGAACCGTCTCACGGGGGCCGGCGCGCTTGGCGCACTG
CCTGCGTGCTTGACCAAGTTAGTACTGAGAGAAAACAGCCTGGGGGAGGT
GCCGCTAGCGGTGCTCGGAGGTCTACCCGCTCTGCAGGCAATTCCTGACC
TGAGCGCGCTGTCTTCCCTGACGGACCTCTCCGCGGGGGGGAACCGTCTC
ACGGGGGCCGGCGCGCTTGGCGCACTGCCTGCGTGCTTGACCAAGTTAGT
ACTGAGAGAAAACAGCCTGGGGGAGGTGCCGCTAGCGGTGCTCGGAGGTC
TACCCGCTCTGCAGGTGCTTGACCTGTCAGCGAACTCGATCGAGGGCCTT
CCGCCCTTCGCAGCCGGTTTGCCGGCCTTGGTGGAGCTTATCCTCGACGA
GAACTCCTTGCGAGCGTTGGGGGACGAGCTGGTGGGTCTGTCGAAGCTCA
AGAAACTCTCGGCGAGGTCTAACCGTATCGCGGCGGTTGACCCTTTCAGC
GGGCAGCAGGTGCTTGACCTGTCAGCGAACTCGATCGAGGGCCTTCCGCC
CTTCGCAGCCGGTTTGCCGGCCTTGGTGGAGCTTATCCTCGACGAGAACT
CCTTGCGAGCGTTGGGGGACGAGCTGGTGGGTCTGTCGAAGCTCAAGAAA
CTCTCGGCGAGGTCTAACCGTATCGCGGCGGTTGACCCTTTCAGCGGGCA
GCAGGCAATCTCTCGAAGGCTGTTTGCCGATTCTACGGTGGAGTCCCTGG
AGCTCGCAGGCAACGTCATGGACAAGACGGACCTGATGCGGATGGAAGGG
GTGGACGCTTTCCTGGCTCGCAGAGAAAAAAACAAGAACAAGAACCTGCA
GGGCGGCGGGATGCTGACGCTCTCCGTCTGCGGCCTTGACTGAGCAATCT
CTCGAAGGCTGTTTGCCGATTCTACGGTGGAGTCCCTGGAGCTCGCAGGC
AACGTCATGGACAAGACGGACCTGATGCGGATGGAAGGGGTGGACGCTTT
CCTGGCTCGCAGAGAAAAAAACAAGAACAAGAACCTGCAGGGCGGCGGGA
TGCTGACGCTCTCCGTCTGCGGCCTTGACTGA
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