mRNA_L-elsbetiae_contig8329.17332.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8329.17332.1
Unique NamemRNA_L-elsbetiae_contig8329.17332.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8329.17332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8329contigL-elsbetiae_contig8329:2761..3411 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size308
Cds size234
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8329.17332.1prot_L-elsbetiae_contig8329.17332.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8329 2761..3339 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816915.4949555-CDS-L-elsbetiae_contig8329:2760..29381622816915.4949555-CDS-L-elsbetiae_contig8329:2760..2938Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8329 2761..2938 +
1691683909.2232141-CDS-L-elsbetiae_contig8329:2760..29381691683909.2232141-CDS-L-elsbetiae_contig8329:2760..2938Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8329 2761..2938 +
1622816915.5051641-CDS-L-elsbetiae_contig8329:3283..33391622816915.5051641-CDS-L-elsbetiae_contig8329:3283..3339Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8329 3284..3339 +
1691683909.2333736-CDS-L-elsbetiae_contig8329:3283..33391691683909.2333736-CDS-L-elsbetiae_contig8329:3283..3339Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8329 3284..3339 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816915.5149448-UTR-L-elsbetiae_contig8329:3339..34111622816915.5149448-UTR-L-elsbetiae_contig8329:3339..3411Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8329 3340..3411 +
1691683909.2430763-UTR-L-elsbetiae_contig8329:3339..34111691683909.2430763-UTR-L-elsbetiae_contig8329:3339..3411Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8329 3340..3411 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8329.17332.1

>prot_L-elsbetiae_contig8329.17332.1 ID=prot_L-elsbetiae_contig8329.17332.1|Name=mRNA_L-elsbetiae_contig8329.17332.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=78bp
KAESEAERREATQVKSGKGTGLSSPFDYREGDIIHPWDRVDCRANNRDPV
ISRERKNKTGFSCTRTAAAVAAAGAKL*
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mRNA from alignment at L-elsbetiae_contig8329:2761..3411+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8329.17332.1 ID=mRNA_L-elsbetiae_contig8329.17332.1|Name=mRNA_L-elsbetiae_contig8329.17332.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=651bp|location=Sequence derived from alignment at L-elsbetiae_contig8329:2761..3411+ (Laminarionema elsbetiae ELsaHSoW15)
AAAGCGGAAAGCGAAGCCGAGAGAAGGGAGGCAACACAGGTCAAGTCAGG
GAAGGGGACAGGTCTCTCGTCGCCCTTTGACTACAGAGAAGGAGATATCA
TTCACCCCTGGGATCGGGTGGATTGTCGAGCAAACAACAGAGATCCGGTA
ATCTCTCGCGAAAGAAAAAATAAGACAGGTGTGATTGAGCAACTTGGTGT
GAGAGGGGTGAAATCAGGTTCAGTCAAAAAAGCCGATGGCTAGATGACGA
GCGAGACACCTGCACCTGCACGTTTTTCATGTCGAGTATGCTGGTCTTGA
TCCCTCCCCCAGCCAGCTCCCGCCATCGACCGGATCTCCGTATTTAACTG
CTGCAATCCCGTCGCGCGCGCGGTCTTGTGTGTATTTTGCTGTCCGTGAC
AACATAGCTCTGGACACACACAACGAACGCTTGGCTGGATCCCTTTTCTT
TCGCAACCTGCCACAGATAAGACCCACATGTGACATATATACAAACACAC
CGCCGTTCGTACCTCTCGCGCAGGCTTTTCTTGCACACGCACAGCAGCAG
CAGTAGCAGCAGCAGGAGCTAAGCTATGACAGATTTCTCTTCTTCCAGCG
GCGTGACGACGGCGACTTACCACGAGCCGAGCCCGGCGGGCGGCGGCGGC
G
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8329:2761..3411+

>mRNA_L-elsbetiae_contig8329.17332.1 ID=mRNA_L-elsbetiae_contig8329.17332.1|Name=mRNA_L-elsbetiae_contig8329.17332.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=468bp|location=Sequence derived from alignment at L-elsbetiae_contig8329:2761..3411+ (Laminarionema elsbetiae ELsaHSoW15)
AAAGCGGAAAGCGAAGCCGAGAGAAGGGAGGCAACACAGGTCAAGTCAGG
GAAGGGGACAGGTCTCTCGTCGCCCTTTGACTACAGAGAAGGAGATATCA
TTCACCCCTGGGATCGGGTGGATTGTCGAGCAAACAACAGAGATCCGGTA
ATCTCTCGCGAAAGAAAAAATAAGACAGAAAGCGGAAAGCGAAGCCGAGA
GAAGGGAGGCAACACAGGTCAAGTCAGGGAAGGGGACAGGTCTCTCGTCG
CCCTTTGACTACAGAGAAGGAGATATCATTCACCCCTGGGATCGGGTGGA
TTGTCGAGCAAACAACAGAGATCCGGTAATCTCTCGCGAAAGAAAAAATA
AGACAGGCTTTTCTTGCACACGCACAGCAGCAGCAGTAGCAGCAGCAGGA
GCTAAGCTATGAGCTTTTCTTGCACACGCACAGCAGCAGCAGTAGCAGCA
GCAGGAGCTAAGCTATGA
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