mRNA_L-elsbetiae_contig8323.17327.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8323.17327.1
Unique NamemRNA_L-elsbetiae_contig8323.17327.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8323.17327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8323contigL-elsbetiae_contig8323:3708..6560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size320
Cds size318
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8323.17327.1prot_L-elsbetiae_contig8323.17327.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8323 3708..6560 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816914.999335-CDS-L-elsbetiae_contig8323:3707..37871622816914.999335-CDS-L-elsbetiae_contig8323:3707..3787Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8323 3708..3787 -
1691683908.8818028-CDS-L-elsbetiae_contig8323:3707..37871691683908.8818028-CDS-L-elsbetiae_contig8323:3707..3787Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8323 3708..3787 -
1622816915.0095441-CDS-L-elsbetiae_contig8323:4851..49781622816915.0095441-CDS-L-elsbetiae_contig8323:4851..4978Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8323 4852..4978 -
1691683908.895885-CDS-L-elsbetiae_contig8323:4851..49781691683908.895885-CDS-L-elsbetiae_contig8323:4851..4978Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8323 4852..4978 -
1622816915.0199692-CDS-L-elsbetiae_contig8323:6449..65601622816915.0199692-CDS-L-elsbetiae_contig8323:6449..6560Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8323 6450..6560 -
1691683908.9059446-CDS-L-elsbetiae_contig8323:6449..65601691683908.9059446-CDS-L-elsbetiae_contig8323:6449..6560Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8323 6450..6560 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8323.17327.1

>prot_L-elsbetiae_contig8323.17327.1 ID=prot_L-elsbetiae_contig8323.17327.1|Name=mRNA_L-elsbetiae_contig8323.17327.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
MNSKHRKARNQPAVAREKREMAPGRTAAALGPGRSFESTHTRDITTKASD
SGFHKMRLAIPGKKVLTAILSCFIMATPEAVLPEPRPVAIPLLAIQLGRW
APAGSW
back to top

mRNA from alignment at L-elsbetiae_contig8323:3708..6560-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8323.17327.1 ID=mRNA_L-elsbetiae_contig8323.17327.1|Name=mRNA_L-elsbetiae_contig8323.17327.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2853bp|location=Sequence derived from alignment at L-elsbetiae_contig8323:3708..6560- (Laminarionema elsbetiae ELsaHSoW15)
ATGAACTCGAAGCATCGAAAGGCCCGCAACCAACCAGCGGTCGCGAGAGA
AAAACGCGAGATGGCTCCGGGCAGAACGGCAGCAGCACTAGGCCCCGGCC
GCTCTTTCGAGGTATGTGACCCTATGTGGTAGAGGTGTAGAGGGGAGAAA
GTTGCAGACTGCTGTATGTGCGTGGCGTGCTTCGGTTTTTTCGCTCCGCG
TCTCGCGGGCTCCGCGTCTCTGTCTGTGTGTATGTTTGTACAGATATATG
TAGACTTGCGACAGGCATATCGTGCGACCGGGTAAAGGAATGTGCGTGTG
ATCGATAGTGTGTGGCGTTACCGTGCATGCGTGTATTAAGCGGCAGGTCA
GGACAAGACCTACAGCAGTTTGTACCCAAAACCTACATCCCGATGGAAAA
GATAAAACGTGCTTTTTTGTTTTTGGCAGAAAATCAAAACGTGGGTACAC
GCATGATTCCCCGGAACCCCCTGAGTATTTGTTTTCTTTGTTTATCCTCC
CATCATTGGATTTTCCGCCGCCTGCCCTCTCCTCCAGTTCCACTAGCTAG
AACTAGCTAGACGACCCAACCGGGGTCACACAGGAGGGGGGAGATGGACC
CCCTCCTGCGGTCCCTGCCTGAGAGGCTTTTATCGCGAGCAGGGTTCAGC
ACTCCCCACTACCATGACCTGCGCAAATCAAATGATGTCGTCATTATTCT
GGTACAAGGACGGTGGTCACATCGTCCGCCACTAATGTACCCTGAAACCG
AGCAGTGAAAGGTGAAGGGACGGTACACAGCTGTGCTGATTGTATCTGTC
TTGGTAACTTACTGGCTTCGCCAAAGGAGATAGGCTCCGAGAGAGCGATT
TGGCGACGAAGGGGTGAGGATAGGTTGCCCCCCCCTGCGAGAAAAAAATC
ACAGACCTGCACCTTGAATGCAACGAAGGAGAAAACCTGGACACGGCCCA
TGGCCCGACCAGATTCTCCGCATTCATGGGACCCCGGGCTAATATGTATG
TCGCACGATGTGTCTTAGGATGCGTCGTTTGGATGTGCATTATAAGTAGC
TAATGGGACGACACACACACACACACACACACACACTCCCCACTCTCGTA
TTTACTATCGAGCTTTCCAGCTTTTATCGCTTTCAATTTTGCCAGGAAGA
GATGTGGGGAAAAAAGGCTCGCTTAGCCCGGATTCGAACCCTTGATCTGG
TGCATTAGAAGGTTGCTGGGATACCAACTAGACCACCGGGGTCGACCGGC
TATTGTTCACGGCTCGTTGACCTCTGGCGCTCATCGTACAGACCACGTAT
TGACACGAATCAACGGAGAGGACTTGCAACAGATGTAAACTTTGACCGCC
AGCAGTGTCTGTGCCGCGTGGCTTTGTTATGAAAATAAATAAATAAAAAA
CTGCTGTTTTGCCATGGCGCCCACAAAAAGTCCGGTCGGCGTTCGCCTCT
TGTTTTAAGGCAGCACAATTGCGCCGCATTCTGCGGACCCCGTATTTGTA
TTTTCCGACAACAAAAGCAGAAATAAAGTTTTGAAACGACTTTCTTGCGG
CTCAACGTTTGGCCAACCACGTGTCGCCAAAGAGCACACACACGCGCGAT
ATTACAACAAAAGCCAGCGATTCCGGGTTCCACAAGATGAGGTTAGCGAT
TCCGGGCAAGAAAGTCCTGACGGCGATCCTCAGCTGCTTCATCATGGCGA
CCCCTGAAGGTATGGTGGGGTCCAGTACCCCTATGATGGTCATAGGTGAA
GGTTGCGTACTCTGGTATGTCTTGTGGGCCGCGTGTCAGTTTTGTGCCGA
CGAGCTTTTTTGTTGGCGACCCCACACGTTCGTTAGCCTACCACAGGGAC
ATGCTGTCCCAGCAAAAAACCGCCCCATTTTCCTGGCCTCGATGCTAAGA
GATATGTCGTACCCCTTACGAAAGGATGATGATAGCCGCGGTCGAGGCAC
GAAATGGGCCTGTGTGGGTGGAGAAAGAGGTGTCAGCAACACCATCTCGG
CCGATTTGCCGCCTAAAAATAGCCGATCACCCGAGATTGCAGATGTCAAC
AGAGAGCACTCCCGACACACACACACCGACCCGAACAGAACCAAAACATG
ACCAGCTGTAGTCATGAAGCCTAGGTGACGTATGGACCCACAAGTAGTAG
CAGTGGTGCCCTATAGGTGACTTTTTTTTTTGAGGCCTGCTGCTGTAGGG
GTACACAGCTTTGCTGTTGATGCCCACACACCCTAATTGGGCATGCGCTA
GCGTCTCGCCTTCGACATTTCGAAACAAAGTTTCCGACCAAGAAAGATGC
CTCACATTATGAGCTTTCAGGAAACGTATTAAGATCGGGGCCATGGTAAC
GGGGCCATTTATTTTGCGGCAATGCCGCTTAACTACAAATGACCGCAAAA
CATGTCCCAGACCTCGTTTTGCTCTATTTCCAGTATATTTCGTGCCCGCC
GAGCACCACGGCGGCAGTGCAATTTGAGCGAGAGAAAAAGCATCTGCATC
CTGTTGATGAAGCCTTATCGTATTGAATAAGGTCTCAGCTACCACCTTGT
AATGTCAGGGCGGGAGAGCGTTGCTCGTGTGGTGTGAGCTGTGAGCTGAG
GTGCACTTATGATGAAATTACTATATTTTTCATATTGTGTCCAAAATGGG
TGTTTCTGATTGAGCACACGGGCAACCTCCTGCAGCACACGAACAACCTG
AGGCATGTGGTTGATATTTTTTTTCTGTTGCCTTCGTCGTATCTCGGCCG
TGCTGTTTGTGTATTTTCGGCAGCTGTGCTCCCCGAACCGCGACCAGTTG
CGATCCCCCTATTGGCGATTCAATTGGGGAGGTGGGCACCTGCCGGCAGC
TGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig8323:3708..6560-

>mRNA_L-elsbetiae_contig8323.17327.1 ID=mRNA_L-elsbetiae_contig8323.17327.1|Name=mRNA_L-elsbetiae_contig8323.17327.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig8323:3708..6560- (Laminarionema elsbetiae ELsaHSoW15)
ATGAACTCGAAGCATCGAAAGGCCCGCAACCAACCAGCGGTCGCGAGAGA
AAAACGCGAGATGGCTCCGGGCAGAACGGCAGCAGCACTAGGCCCCGGCC
GCTCTTTCGAGATGAACTCGAAGCATCGAAAGGCCCGCAACCAACCAGCG
GTCGCGAGAGAAAAACGCGAGATGGCTCCGGGCAGAACGGCAGCAGCACT
AGGCCCCGGCCGCTCTTTCGAGAGCACACACACGCGCGATATTACAACAA
AAGCCAGCGATTCCGGGTTCCACAAGATGAGGTTAGCGATTCCGGGCAAG
AAAGTCCTGACGGCGATCCTCAGCTGCTTCATCATGGCGACCCCTGAAGA
GCACACACACGCGCGATATTACAACAAAAGCCAGCGATTCCGGGTTCCAC
AAGATGAGGTTAGCGATTCCGGGCAAGAAAGTCCTGACGGCGATCCTCAG
CTGCTTCATCATGGCGACCCCTGAAGCTGTGCTCCCCGAACCGCGACCAG
TTGCGATCCCCCTATTGGCGATTCAATTGGGGAGGTGGGCACCTGCCGGC
AGCTGGCTGTGCTCCCCGAACCGCGACCAGTTGCGATCCCCCTATTGGCG
ATTCAATTGGGGAGGTGGGCACCTGCCGGCAGCTGG
back to top