mRNA_L-elsbetiae_contig8323.17326.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8323.17326.1
Unique NamemRNA_L-elsbetiae_contig8323.17326.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8323.17326.1 vs. uniprot
Match: A0A6H5J7P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P3_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 2.620e-9
Identity = 29/41 (70.73%), Postives = 32/41 (78.05%), Query Frame = 3 
Query:   12 IGAKGVGNQADRGKCMERAISMFAGKGMEGVPRDVVLALMR 134
            IGA G GNQ  RG C  RA+ MF GKGMEG+PRDVVLAL+R
Sbjct:  182 IGASGQGNQCRRGDCFARAMGMFFGKGMEGIPRDVVLALLR 222
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8323.17326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J7P3_9PHAE2.620e-970.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8323contigL-elsbetiae_contig8323:1760..2063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size304
Cds size132
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8323.17326.1prot_L-elsbetiae_contig8323.17326.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8323 1768..1899 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816915.1109648-UTR-L-elsbetiae_contig8323:1759..17671622816915.1109648-UTR-L-elsbetiae_contig8323:1759..1767Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8323 1760..1767 +
1691683908.9489553-UTR-L-elsbetiae_contig8323:1759..17671691683908.9489553-UTR-L-elsbetiae_contig8323:1759..1767Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8323 1760..1767 +
1622816915.1374245-UTR-L-elsbetiae_contig8323:1899..20631622816915.1374245-UTR-L-elsbetiae_contig8323:1899..2063Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8323 1900..2063 +
1691683908.9784288-UTR-L-elsbetiae_contig8323:1899..20631691683908.9784288-UTR-L-elsbetiae_contig8323:1899..2063Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8323 1900..2063 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816915.1241586-CDS-L-elsbetiae_contig8323:1767..18991622816915.1241586-CDS-L-elsbetiae_contig8323:1767..1899Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8323 1768..1899 +
1691683908.9611406-CDS-L-elsbetiae_contig8323:1767..18991691683908.9611406-CDS-L-elsbetiae_contig8323:1767..1899Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8323 1768..1899 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8323.17326.1

>prot_L-elsbetiae_contig8323.17326.1 ID=prot_L-elsbetiae_contig8323.17326.1|Name=mRNA_L-elsbetiae_contig8323.17326.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=44bp
MIGAKGVGNQADRGKCMERAISMFAGKGMEGVPRDVVLALMRG*
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mRNA from alignment at L-elsbetiae_contig8323:1760..2063+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8323.17326.1 ID=mRNA_L-elsbetiae_contig8323.17326.1|Name=mRNA_L-elsbetiae_contig8323.17326.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=304bp|location=Sequence derived from alignment at L-elsbetiae_contig8323:1760..2063+ (Laminarionema elsbetiae ELsaHSoW15)
CGTCAATAATGATTGGAGCAAAGGGTGTCGGTAACCAGGCGGATCGCGGG
AAGTGCATGGAACGGGCTATTAGCATGTTTGCGGGGAAGGGAATGGAAGG
GGTTCCTCGTGATGTGGTTTTGGCTTTGATGAGGGGCTGAAGCAATGCAC
TTTAGAGAGCGTTCAAATATGTCAGTCCTGTGCTGCAGGTAGTTGTGCTT
TGTGAGATGAATTCTTCAAATCGTGACAAGTATTTGACGCTGCAAATGAC
CGAGGGAGCTGTGCATTGATTGTTTTGCGTTATCCTATGATATGTCTCGT
TCGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8323:1760..2063+

>mRNA_L-elsbetiae_contig8323.17326.1 ID=mRNA_L-elsbetiae_contig8323.17326.1|Name=mRNA_L-elsbetiae_contig8323.17326.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=264bp|location=Sequence derived from alignment at L-elsbetiae_contig8323:1760..2063+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATTGGAGCAAAGGGTGTCGGTAACCAGGCGGATCGCGGGAAGTGCAT
GGAACGGGCTATTAGCATGTTTGCGGGGAAGGGAATGGAAGGGGTTCCTC
GTGATGTGGTTTTGGCTTTGATGAGGGGCTGAATGATTGGAGCAAAGGGT
GTCGGTAACCAGGCGGATCGCGGGAAGTGCATGGAACGGGCTATTAGCAT
GTTTGCGGGGAAGGGAATGGAAGGGGTTCCTCGTGATGTGGTTTTGGCTT
TGATGAGGGGCTGA
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