mRNA_L-elsbetiae_contig8323.17325.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8323.17325.1
Unique NamemRNA_L-elsbetiae_contig8323.17325.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8323.17325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8323contigL-elsbetiae_contig8323:540..1192 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size653
Cds size462
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8323.17325.1prot_L-elsbetiae_contig8323.17325.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8323 609..1070 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816915.0539138-UTR-L-elsbetiae_contig8323:539..6081622816915.0539138-UTR-L-elsbetiae_contig8323:539..608Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8323 540..608 +
1691683908.9154449-UTR-L-elsbetiae_contig8323:539..6081691683908.9154449-UTR-L-elsbetiae_contig8323:539..608Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8323 540..608 +
1622816915.0804803-UTR-L-elsbetiae_contig8323:1070..11921622816915.0804803-UTR-L-elsbetiae_contig8323:1070..1192Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8323 1071..1192 +
1691683908.9382625-UTR-L-elsbetiae_contig8323:1070..11921691683908.9382625-UTR-L-elsbetiae_contig8323:1070..1192Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8323 1071..1192 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816915.0675023-CDS-L-elsbetiae_contig8323:608..10701622816915.0675023-CDS-L-elsbetiae_contig8323:608..1070Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8323 609..1070 +
1691683908.9279592-CDS-L-elsbetiae_contig8323:608..10701691683908.9279592-CDS-L-elsbetiae_contig8323:608..1070Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8323 609..1070 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8323.17325.1

>prot_L-elsbetiae_contig8323.17325.1 ID=prot_L-elsbetiae_contig8323.17325.1|Name=mRNA_L-elsbetiae_contig8323.17325.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=154bp
MSDDEATHDSKRARVSDAQGDSVSPSSGDENVDTRPRCDSDVSDGSAASS
TRMTPEEEFGDMALLLGELVVCANPPAAALELKRGVEEDPSAVRENIRSQ
AIALAGSCSCTTPMGKWTKKRPHETPTCGLRQADLVAAVDMEVCVHPKVE
EGK*
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mRNA from alignment at L-elsbetiae_contig8323:540..1192+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8323.17325.1 ID=mRNA_L-elsbetiae_contig8323.17325.1|Name=mRNA_L-elsbetiae_contig8323.17325.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=653bp|location=Sequence derived from alignment at L-elsbetiae_contig8323:540..1192+ (Laminarionema elsbetiae ELsaHSoW15)
CACACGAACACCTCCAAAGCTCCTACACAAGACAGCAACTGGGGTGGCTG
CCAGCAACTTCCGTGTAGCATGTCCGATGATGAGGCTACCCACGACAGCA
AACGGGCGCGTGTGAGCGATGCTCAGGGTGATTCAGTTTCACCCTCCTCT
GGTGACGAAAACGTAGACACGCGGCCTCGCTGCGACAGCGACGTCTCAGA
CGGTTCAGCTGCTAGCTCCACACGCATGACACCGGAGGAGGAGTTCGGGG
ATATGGCCCTCCTCCTTGGTGAACTCGTGGTGTGTGCGAACCCACCAGCG
GCCGCCCTCGAGCTCAAGAGGGGAGTGGAAGAAGACCCGTCTGCTGTGCG
TGAGAACATTCGCTCTCAAGCAATCGCTCTCGCTGGGAGCTGCTCGTGCA
CGACCCCCATGGGCAAGTGGACCAAGAAGCGACCCCACGAGACACCCACA
TGCGGCCTCCGACAGGCAGACCTCGTGGCTGCCGTGGACATGGAGGTATG
TGTACATCCTAAAGTTGAAGAGGGAAAGTAGCAACGAGAGACTGCTGCAC
GCACCCACGATGAAACATTTCAAGTCAGTGTTTTTGTCCGCTAGTTTACA
GCAGTAGCAGCAGTAGCAGCAGTAATAGGACACACCTCGCTGCTCGTTTA
CAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8323:540..1192+

>mRNA_L-elsbetiae_contig8323.17325.1 ID=mRNA_L-elsbetiae_contig8323.17325.1|Name=mRNA_L-elsbetiae_contig8323.17325.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=924bp|location=Sequence derived from alignment at L-elsbetiae_contig8323:540..1192+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCGATGATGAGGCTACCCACGACAGCAAACGGGCGCGTGTGAGCGA
TGCTCAGGGTGATTCAGTTTCACCCTCCTCTGGTGACGAAAACGTAGACA
CGCGGCCTCGCTGCGACAGCGACGTCTCAGACGGTTCAGCTGCTAGCTCC
ACACGCATGACACCGGAGGAGGAGTTCGGGGATATGGCCCTCCTCCTTGG
TGAACTCGTGGTGTGTGCGAACCCACCAGCGGCCGCCCTCGAGCTCAAGA
GGGGAGTGGAAGAAGACCCGTCTGCTGTGCGTGAGAACATTCGCTCTCAA
GCAATCGCTCTCGCTGGGAGCTGCTCGTGCACGACCCCCATGGGCAAGTG
GACCAAGAAGCGACCCCACGAGACACCCACATGCGGCCTCCGACAGGCAG
ACCTCGTGGCTGCCGTGGACATGGAGGTATGTGTACATCCTAAAGTTGAA
GAGGGAAAGTAGATGTCCGATGATGAGGCTACCCACGACAGCAAACGGGC
GCGTGTGAGCGATGCTCAGGGTGATTCAGTTTCACCCTCCTCTGGTGACG
AAAACGTAGACACGCGGCCTCGCTGCGACAGCGACGTCTCAGACGGTTCA
GCTGCTAGCTCCACACGCATGACACCGGAGGAGGAGTTCGGGGATATGGC
CCTCCTCCTTGGTGAACTCGTGGTGTGTGCGAACCCACCAGCGGCCGCCC
TCGAGCTCAAGAGGGGAGTGGAAGAAGACCCGTCTGCTGTGCGTGAGAAC
ATTCGCTCTCAAGCAATCGCTCTCGCTGGGAGCTGCTCGTGCACGACCCC
CATGGGCAAGTGGACCAAGAAGCGACCCCACGAGACACCCACATGCGGCC
TCCGACAGGCAGACCTCGTGGCTGCCGTGGACATGGAGGTATGTGTACAT
CCTAAAGTTGAAGAGGGAAAGTAG
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