mRNA_L-elsbetiae_contig8315.17320.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8315.17320.1
Unique NamemRNA_L-elsbetiae_contig8315.17320.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8315.17320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8315contigL-elsbetiae_contig8315:824..1280 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size457
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8315.17320.1prot_L-elsbetiae_contig8315.17320.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8315 861..1163 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816914.605557-UTR-L-elsbetiae_contig8315:823..8601622816914.605557-UTR-L-elsbetiae_contig8315:823..860Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8315 824..860 +
1691683908.6121817-UTR-L-elsbetiae_contig8315:823..8601691683908.6121817-UTR-L-elsbetiae_contig8315:823..860Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8315 824..860 +
1622816914.6351533-UTR-L-elsbetiae_contig8315:1163..12801622816914.6351533-UTR-L-elsbetiae_contig8315:1163..1280Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8315 1164..1280 +
1691683908.6321127-UTR-L-elsbetiae_contig8315:1163..12801691683908.6321127-UTR-L-elsbetiae_contig8315:1163..1280Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8315 1164..1280 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816914.6189861-CDS-L-elsbetiae_contig8315:860..11631622816914.6189861-CDS-L-elsbetiae_contig8315:860..1163Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8315 861..1163 +
1691683908.62254-CDS-L-elsbetiae_contig8315:860..11631691683908.62254-CDS-L-elsbetiae_contig8315:860..1163Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8315 861..1163 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8315.17320.1

>prot_L-elsbetiae_contig8315.17320.1 ID=prot_L-elsbetiae_contig8315.17320.1|Name=mRNA_L-elsbetiae_contig8315.17320.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
MCPKSLPSTQVHFSLHTGACSETRKYRQTPCLQAQLVTESFFLFGHLRRF
LSGNNRVCMYICCARLLVSSDCCVARRSPLVLLARVSPRPPPRACCTSGM
*
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mRNA from alignment at L-elsbetiae_contig8315:824..1280+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8315.17320.1 ID=mRNA_L-elsbetiae_contig8315.17320.1|Name=mRNA_L-elsbetiae_contig8315.17320.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=457bp|location=Sequence derived from alignment at L-elsbetiae_contig8315:824..1280+ (Laminarionema elsbetiae ELsaHSoW15)
GATTTGAGTTGGGTGTAGGTATGGTCCGTGCGCAACAATGTGTCCTAAAA
GTTTACCCAGCACCCAGGTACACTTTTCTCTGCACACAGGTGCTTGTTCC
GAAACCCGAAAGTACCGGCAAACGCCCTGTCTACAGGCGCAGCTCGTGAC
GGAGAGTTTTTTTTTGTTTGGTCATCTTCGACGTTTTTTATCAGGGAATA
ACCGGGTATGTATGTACATATGTTGTGCTCGTTTGCTTGTTTCGTCTGAC
TGCTGCGTCGCTCGACGCTCTCCCCTCGTCTTGCTCGCTCGCGTCTCCCC
CCGCCCGCCGCCTCGTGCTTGCTGCACCTCTGGCATGTGAATGAATGCCC
TTTTTCCCTTTTGTTCTGGTGCTGTTCGTTTTTTTTGTCTTCCGCAGCAC
ATGACGGAAGGGTTGCTGAGCATGGTTAGGAACGCCGACGCGCAGGGTGA
CAGCCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8315:824..1280+

>mRNA_L-elsbetiae_contig8315.17320.1 ID=mRNA_L-elsbetiae_contig8315.17320.1|Name=mRNA_L-elsbetiae_contig8315.17320.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig8315:824..1280+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGTCCTAAAAGTTTACCCAGCACCCAGGTACACTTTTCTCTGCACAC
AGGTGCTTGTTCCGAAACCCGAAAGTACCGGCAAACGCCCTGTCTACAGG
CGCAGCTCGTGACGGAGAGTTTTTTTTTGTTTGGTCATCTTCGACGTTTT
TTATCAGGGAATAACCGGGTATGTATGTACATATGTTGTGCTCGTTTGCT
TGTTTCGTCTGACTGCTGCGTCGCTCGACGCTCTCCCCTCGTCTTGCTCG
CTCGCGTCTCCCCCCGCCCGCCGCCTCGTGCTTGCTGCACCTCTGGCATG
TGAATGTGTCCTAAAAGTTTACCCAGCACCCAGGTACACTTTTCTCTGCA
CACAGGTGCTTGTTCCGAAACCCGAAAGTACCGGCAAACGCCCTGTCTAC
AGGCGCAGCTCGTGACGGAGAGTTTTTTTTTGTTTGGTCATCTTCGACGT
TTTTTATCAGGGAATAACCGGGTATGTATGTACATATGTTGTGCTCGTTT
GCTTGTTTCGTCTGACTGCTGCGTCGCTCGACGCTCTCCCCTCGTCTTGC
TCGCTCGCGTCTCCCCCCGCCCGCCGCCTCGTGCTTGCTGCACCTCTGGC
ATGTGA
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