mRNA_L-elsbetiae_contig8310.17316.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8310.17316.1
Unique NamemRNA_L-elsbetiae_contig8310.17316.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8310.17316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8310contigL-elsbetiae_contig8310:6676..7032 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size359
Cds size357
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816914.3510892-CDS-L-elsbetiae_contig8310:6675..70321622816914.3510892-CDS-L-elsbetiae_contig8310:6675..7032Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8310 6676..7032 +
1691683908.4541976-CDS-L-elsbetiae_contig8310:6675..70321691683908.4541976-CDS-L-elsbetiae_contig8310:6675..7032Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8310 6676..7032 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8310.17316.1prot_L-elsbetiae_contig8310.17316.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8310 6676..7032 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8310.17316.1

>prot_L-elsbetiae_contig8310.17316.1 ID=prot_L-elsbetiae_contig8310.17316.1|Name=mRNA_L-elsbetiae_contig8310.17316.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp
PAGAGVGVGTGLAAAPPAAAGAAPAADAAACFPTNLAAQHHRRCRRHRRG
RSPSRSSPGFARRRPWGSFSREVHFCRRGRDARCRLNSPLIPVCSPSQIY
LPLVLALVSKLHLRSKGG*
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mRNA from alignment at L-elsbetiae_contig8310:6676..7032+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8310.17316.1 ID=mRNA_L-elsbetiae_contig8310.17316.1|Name=mRNA_L-elsbetiae_contig8310.17316.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=357bp|location=Sequence derived from alignment at L-elsbetiae_contig8310:6676..7032+ (Laminarionema elsbetiae ELsaHSoW15)
CCTGCCGGTGCTGGTGTTGGTGTTGGTACTGGTTTGGCCGCCGCCCCACC
TGCAGCTGCCGGAGCTGCTCCCGCTGCTGATGCTGCTGCTTGCTTCCCCA
CCAATCTTGCTGCCCAGCACCACCGCCGCTGCCGCCGCCACCGCCGAGGG
CGTAGCCCCAGCCGCTCGTCGCCTGGTTTTGCGCGGAGGCGTCCCTGGGG
GAGCTTCTCGAGGGAGGTCCACTTCTGCCGGAGAGGGAGAGATGCCCGCT
GCCGGCTGAACTCACCCCTGATCCCGGTCTGTTCCCCAAGCCAGATTTAC
CTCCCTCTGGTCCTGGCACTCGTCTCCAAACTCCATCTCCGCTCGAAGGG
GGGTTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8310:6676..7032+

>mRNA_L-elsbetiae_contig8310.17316.1 ID=mRNA_L-elsbetiae_contig8310.17316.1|Name=mRNA_L-elsbetiae_contig8310.17316.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig8310:6676..7032+ (Laminarionema elsbetiae ELsaHSoW15)
CCTGCCGGTGCTGGTGTTGGTGTTGGTACTGGTTTGGCCGCCGCCCCACC
TGCAGCTGCCGGAGCTGCTCCCGCTGCTGATGCTGCTGCTTGCTTCCCCA
CCAATCTTGCTGCCCAGCACCACCGCCGCTGCCGCCGCCACCGCCGAGGG
CGTAGCCCCAGCCGCTCGTCGCCTGGTTTTGCGCGGAGGCGTCCCTGGGG
GAGCTTCTCGAGGGAGGTCCACTTCTGCCGGAGAGGGAGAGATGCCCGCT
GCCGGCTGAACTCACCCCTGATCCCGGTCTGTTCCCCAAGCCAGATTTAC
CTCCCTCTGGTCCTGGCACTCGTCTCCAAACTCCATCTCCGCTCGAAGGG
GGGTTAGCCTGCCGGTGCTGGTGTTGGTGTTGGTACTGGTTTGGCCGCCG
CCCCACCTGCAGCTGCCGGAGCTGCTCCCGCTGCTGATGCTGCTGCTTGC
TTCCCCACCAATCTTGCTGCCCAGCACCACCGCCGCTGCCGCCGCCACCG
CCGAGGGCGTAGCCCCAGCCGCTCGTCGCCTGGTTTTGCGCGGAGGCGTC
CCTGGGGGAGCTTCTCGAGGGAGGTCCACTTCTGCCGGAGAGGGAGAGAT
GCCCGCTGCCGGCTGAACTCACCCCTGATCCCGGTCTGTTCCCCAAGCCA
GATTTACCTCCCTCTGGTCCTGGCACTCGTCTCCAAACTCCATCTCCGCT
CGAAGGGGGGTTAG
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