mRNA_L-elsbetiae_contig8310.17315.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8310.17315.1
Unique NamemRNA_L-elsbetiae_contig8310.17315.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8310.17315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8310contigL-elsbetiae_contig8310:4670..5249 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size581
Cds size399
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816914.3112369-CDS-L-elsbetiae_contig8310:4669..50681622816914.3112369-CDS-L-elsbetiae_contig8310:4669..5068Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8310 4670..5068 +
1691683908.4354496-CDS-L-elsbetiae_contig8310:4669..50681691683908.4354496-CDS-L-elsbetiae_contig8310:4669..5068Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8310 4670..5068 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816914.3222733-UTR-L-elsbetiae_contig8310:5068..52491622816914.3222733-UTR-L-elsbetiae_contig8310:5068..5249Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8310 5069..5249 +
1691683908.4451447-UTR-L-elsbetiae_contig8310:5068..52491691683908.4451447-UTR-L-elsbetiae_contig8310:5068..5249Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8310 5069..5249 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8310.17315.1prot_L-elsbetiae_contig8310.17315.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8310 4670..5068 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8310.17315.1

>prot_L-elsbetiae_contig8310.17315.1 ID=prot_L-elsbetiae_contig8310.17315.1|Name=mRNA_L-elsbetiae_contig8310.17315.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=133bp
SPFLLLLLLLLLLLLLLLLLLLLGPRPSRLDEERDPVLRPIPRSTDLPGT
GRRPAHSSENAGASVLLPPPPPPSFPASSRPLFRYWCLVEGVCGGLPGGK
SETGVGSGLTPPPPLPRPPPLALVLLARLSLS*
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mRNA from alignment at L-elsbetiae_contig8310:4670..5249+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8310.17315.1 ID=mRNA_L-elsbetiae_contig8310.17315.1|Name=mRNA_L-elsbetiae_contig8310.17315.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=580bp|location=Sequence derived from alignment at L-elsbetiae_contig8310:4670..5249+ (Laminarionema elsbetiae ELsaHSoW15)
TCCCCGTTCCTGCTCCTGCTTTTGCTTCTGCTTCTGCTTCTGCTCCTGCT
CCTGCTCCTGCTGCTGCTGGGGCCGCGCCCTAGTCGTCTGGACGAGGAGC
GCGACCCCGTTCTCCGCCCCATCCCGCGCTCGACCGACCTGCCGGGCACG
GGGAGGAGGCCCGCCCACTCGTCGGAAAACGCGGGCGCATCGGTGTTGTT
GCCGCCACCGCCGCCGCCATCCTTTCCGGCCAGCTCCCGCCCGCTCTTCC
GGTACTGGTGCTTGGTGGAGGGCGTCTGCGGGGGCCTACCGGGGGGGAAG
TCCGAGACCGGCGTCGGTAGCGGCCTAACGCCGCCGCCGCCGCTGCCGAG
ACCACCACCCCTCGCGCTCGTGCTCCTTGCCAGGCTGTCGCTATCCTGAT
CCAGGCCGCGGGCGGCGGTGCCGCTGCTGCCGCTGCCACGGCTACCCCCA
CCAACAACGGCGATACCGCCTCCGCTGTTGCCCGGCGGCACAAGGGGCGT
CGCGGAGTCACCCACGGCGACGGCCGTTGTAGCGGGAGGCGCCGTTGGCT
TGGCGACCGCCACGTTGTCGCCACCGCCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8310:4670..5249+

>mRNA_L-elsbetiae_contig8310.17315.1 ID=mRNA_L-elsbetiae_contig8310.17315.1|Name=mRNA_L-elsbetiae_contig8310.17315.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=798bp|location=Sequence derived from alignment at L-elsbetiae_contig8310:4670..5249+ (Laminarionema elsbetiae ELsaHSoW15)
TCCCCGTTCCTGCTCCTGCTTTTGCTTCTGCTTCTGCTTCTGCTCCTGCT
CCTGCTCCTGCTGCTGCTGGGGCCGCGCCCTAGTCGTCTGGACGAGGAGC
GCGACCCCGTTCTCCGCCCCATCCCGCGCTCGACCGACCTGCCGGGCACG
GGGAGGAGGCCCGCCCACTCGTCGGAAAACGCGGGCGCATCGGTGTTGTT
GCCGCCACCGCCGCCGCCATCCTTTCCGGCCAGCTCCCGCCCGCTCTTCC
GGTACTGGTGCTTGGTGGAGGGCGTCTGCGGGGGCCTACCGGGGGGGAAG
TCCGAGACCGGCGTCGGTAGCGGCCTAACGCCGCCGCCGCCGCTGCCGAG
ACCACCACCCCTCGCGCTCGTGCTCCTTGCCAGGCTGTCGCTATCCTGAT
CCCCGTTCCTGCTCCTGCTTTTGCTTCTGCTTCTGCTTCTGCTCCTGCTC
CTGCTCCTGCTGCTGCTGGGGCCGCGCCCTAGTCGTCTGGACGAGGAGCG
CGACCCCGTTCTCCGCCCCATCCCGCGCTCGACCGACCTGCCGGGCACGG
GGAGGAGGCCCGCCCACTCGTCGGAAAACGCGGGCGCATCGGTGTTGTTG
CCGCCACCGCCGCCGCCATCCTTTCCGGCCAGCTCCCGCCCGCTCTTCCG
GTACTGGTGCTTGGTGGAGGGCGTCTGCGGGGGCCTACCGGGGGGGAAGT
CCGAGACCGGCGTCGGTAGCGGCCTAACGCCGCCGCCGCCGCTGCCGAGA
CCACCACCCCTCGCGCTCGTGCTCCTTGCCAGGCTGTCGCTATCCTGA
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