mRNA_L-elsbetiae_contig831.17314.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig831.17314.1
Unique NamemRNA_L-elsbetiae_contig831.17314.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig831.17314.1 vs. uniprot
Match: D7G1A7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1A7_ECTSI)

HSP 1 Score: 558 bits (1437), Expect = 1.760e-194
Identity = 333/456 (73.03%), Postives = 356/456 (78.07%), Query Frame = 1
Query:    1 QAIDEMQAVGVTTVPARVSAPQRKSRLRNRSAA-NTGNPETAE-QHGSVAAARRPGGSXXXXXXXXHNPQQQMTEQDLEGVDRRGICEDVLAGGHVQTFVDFFYLTHRPVPAQDNTDPREGTTEIIVPKREMIFIRDNLVAAESARRRGDTAAVYKAYNSLAQYYQDMNDPKTGVYFHEKCLEISRLTADRGGEMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDIAEEQKEANKSLINVYRKFAEERESEGHYEGSIEYWAKSLEAARSAGDQAALGQACYRLGKAYTELEDPTRAVNYLEDFQNISTELDDLEGQGRAYEALAAVYQQSLGDDDRALTLLQSYLDVASKTQNLGAQATACSNLGVLHSRRGQHSKAKDMFERNFVISRKVVNARQGGATTAVVDMSRAFLGIAAGNEMAEDYMNAVVGDFGALLDWKSNRVRPAPASTAK 1362
            +AIDEMQAVGVTTVPAR S PQRKSRLRNRSAA + G+  T+    GS  A  R  G          N Q Q++EQDLEGVDRR ICED+L GGHVQTFVDFFYLTHRP P QD TDP EG+ E+ VPKREM+FIRDNLVAAESARRRGDTAAVYKAYNSLAQYYQ+MNDPKTGVYFHEKCLEISRLTADRGGEMS   XXXXXXXXXXXXXXXXXXXXXXXXX   VDI +EQKEANKSLINVYRKFAEERES G Y+ SIE+WAKSLEAARSAGDQAALGQACYRLGKAYTELEDPTRAVNYLEDFQ+ISTELDDLEGQG+AYE                                                 R QH+KAKDMFERNFVISRK+VNARQGGATTA+VDMSRAFLGIAAGNEMAEDYMNAVV D GALLDWKSNR+RP+PA+  +
Sbjct:   34 KAIDEMQAVGVTTVPARTSGPQRKSRLRNRSAAVSAGDTGTSGGSQGSAVAGTRLAGGSITSNRSSRNHQDQISEQDLEGVDRRAICEDILTGGHVQTFVDFFYLTHRPAPVQDATDPGEGSAEVNVPKREMLFIRDNLVAAESARRRGDTAAVYKAYNSLAQYYQEMNDPKTGVYFHEKCLEISRLTADRGGEMSANHXXXXXXXXXXXXXXXXXXXXXXXXXATAVDIPDEQKEANKSLINVYRKFAEERESGGLYKESIEFWAKSLEAARSAGDQAALGQACYRLGKAYTELEDPTRAVNYLEDFQSISTELDDLEGQGKAYEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR-QHAKAKDMFERNFVISRKMVNARQGGATTALVDMSRAFLGIAAGNEMAEDYMNAVVSDVGALLDWKSNRIRPSPAANKR 488          
BLAST of mRNA_L-elsbetiae_contig831.17314.1 vs. uniprot
Match: A0A6H5KCG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG2_9PHAE)

HSP 1 Score: 417 bits (1071), Expect = 5.620e-140
Identity = 281/476 (59.03%), Postives = 310/476 (65.13%), Query Frame = 1
Query:    1 QAIDEMQAVGVTTVPARVSAPQRKSRLRNRSAA-NTGNPETAE-QHGSVAAARRPGGSXXXXXXXXHNPQQQMTEQDLEGVDRRGICEDVLAGGHVQTFVDFFYLTHRPVPAQDNTDPREGTTEIIVPKREMIFIRDNLVAAESARRRGDTAAVYKAYN--------------------SLAQYYQDMNDPKTGVYFHEKCLEISRLTADRGGEMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDIAEEQKEANKSLINVYRKFAEERESEGHYEGSIEYWAKSLEAARSAGDQAALGQACYRLGKAYTELEDPTRAVNYLEDFQNISTELDDLEGQGRAYEALAAVYQQSLGDDDRALTLLQSYLDVASKTQNLGAQATACSNLGVLHSRRGQHSKAKDMFERNFVISRKVVNARQGGATTAVVDMSRAFLGIAAGNEMAEDYMNAVVGDFGALLDWKSNRVRPAPASTAK 1362
            +AIDEMQAVGVTTVPAR S PQRKSRLRNRS+A +TG+  T+    GS AA  R  G          N Q Q++E+DLEGVDRR ICED+L GGHVQTFVDFFYLTHRP PAQD TDP +G+ E+ V KREM+FIRDNLVAAESARRRGDTAAVYKAYN                    SLAQYYQ+MNDPKTGVYFHEKCLEISRLTADRGGEMS  XXXXXXXXXXXXXXXXXXXXXXXXXXX  V+I +EQKEANKSLINVYRKFAEERES G Y+ SIE+WAKSLEAARSAGD+AALGQACYRLGKAYTELEDPT                                                      S    + +    C                         +SR         +  A+VDMSRAFLGIAAGNEM+EDYMNAV  D GALLDWKSNR+RP+PA+  +
Sbjct:   34 KAIDEMQAVGVTTVPARTSGPQRKSRLRNRSSAVSTGDTGTSGVSQGSAAAGTRLAGGSITSSRSSRNHQDQISEEDLEGVDRRAICEDILTGGHVQTFVDFFYLTHRPAPAQDATDPGKGSAEVNVLKREMLFIRDNLVAAESARRRGDTAAVYKAYNRRTPVKLNRRTYGCTCNKTHSLAQYYQEMNDPKTGVYFHEKCLEISRLTADRGGEMSANXXXXXXXXXXXXXXXXXXXXXXXXXXXTAVNIPDEQKEANKSLINVYRKFAEERESGGFYKESIEFWAKSLEAARSAGDKAALGQACYRLGKAYTELEDPT------------------------------------------------------SLCLTISSLCFLC-------------------------VSRPP-------SPPALVDMSRAFLGIAAGNEMSEDYMNAVASDVGALLDWKSNRIRPSPAANKR 423          
BLAST of mRNA_L-elsbetiae_contig831.17314.1 vs. uniprot
Match: A0A7S1CI93_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CI93_9STRA)

HSP 1 Score: 236 bits (603), Expect = 5.510e-70
Identity = 172/368 (46.74%), Postives = 235/368 (63.86%), Query Frame = 1
Query:  235 VDRRGICEDVLAGGHVQTFVDFFYLTHRPVPAQDNTDPREGTTEIIVPKREMIFIRDNLVAAESARRRGDTAAVYKAYNSLAQYYQDMNDPKTGVYFHEKCLEISRLTADRGGEMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDIAEEQKEANKSLINVYRKFAEERESEGHYEGSIEYWAKSLEAARSAGDQAALGQACYRLGKAYTELEDPTRAVNYLEDFQNISTELDDL-EGQGRAYEALAAVYQQSLGDDDRALTLLQSYLDVASKTQNLGAQATACSNLGVLHSRRGQHSKAKDMFERNFVISRKVVNARQGGATTAVVDMSRAFLGIAAGNEMAEDYMNAVVGDFGALLDWKSNRV 1335
            VD+  +C DVL  G+VQ++VDFFYLTHRP P  D    ++   ++ V   +M FI++NL  AE+ARR+GDT +VY+AYN+LA YYQ   DPKTG+YF+EKCLEISR          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             L+ +YR+ AE  E+EG  + + E   + L AA++ GD+ A G A YR G+ Y  L +  + V +LE++  I+ E++   EGQG AY ALAA YQ SL   ++A+  L+ +L +A +T NL AQ+ ACSNLGV+ +RRG+  +A + F + + ++R  V++  G      +D +R  LG+A GN     YMN +  D  +LL WK+ R 
Sbjct:   32 VDKHVLCVDVLVSGYVQSYVDFFYLTHRPDPNPDAVGGKDAEIDVAV--EDMHFIKENLTRAEAARRKGDTTSVYEAYNNLALYYQGAADPKTGIYFYEKCLEISRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAELVKLYRRQAEALEAEGKLDAACELHMRCLVAAQACGDRLAEGLANYRAGRVYVLLGETLKGVPFLENYLEITKEVEGQDEGQGAAYAALAAAYQ-SLNQPEKAVDCLEQFLRIAEETGNLAAQSEACSNLGVIFNRRGEFDRAVEYFAKAYELTRTHVSS--GAGRRKELDAARVNLGMARGNAQMGAYMNVINFDVKSLLLWKNRRA 394          
BLAST of mRNA_L-elsbetiae_contig831.17314.1 vs. uniprot
Match: A0A836CHD2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHD2_9STRA)

HSP 1 Score: 232 bits (591), Expect = 5.120e-68
Identity = 154/449 (34.30%), Postives = 203/449 (45.21%), Query Frame = 1
Query:   16 MQAVGVTTVPARVSAPQRKSRLRNRSAANTGNPETAEQHGSVAAARRPGGSXXXXXXXXHNPQQQMTEQDLEGVDRRGICEDVLAGGHVQTFVDFFYLTHRPVPAQDNTDPREGT-TEIIVPKREMIFIRDNLVAAESARRRGDTAAVYKAYNSLAQYYQDMNDPKTGVYFHEKCLEISRLTADRGGEMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDIAEEQKEANKSLINVYRKFAEERESEGHYEGSIEYWAKSLEAARSAGDQAALGQACYRLGKAYTELEDPTRAVNYLEDFQNISTELDDLEGQGRAYEALAAVYQQSLGDDDRALTLLQSYLDVASKTQNLGAQATACSNLGVLHSRRGQHSKAKDMFERNFVISRKVVNARQGGATTAV------VDMSRAFLGIAAGNEMAEDYMNAVVGDFGALLDWKSNRVRP 1341
            MQAV    + AR + P RK++LRN++             GS  A +R                          +DRR +CE +L GGHVQ+F+DFFYLTHRP P QD T   +    EI+VP  EM F+R  L  AE  R+ GDTAA+Y  YN+LA+Y+QD  DP+TGVYF+EKCLE++R+T DR GEM+                                D   E + A   L+ VYRK AE +E+ G Y G+IE W KS++AAR+A D+ A GQACYRLG+ + EL +P +A+ +LEDF+                                                                              R + ++R V +A                D +R  +G+A  NEM E Y  AV GD  ALLDWK NRVRP
Sbjct:    1 MQAVATGAIAARPAMPPRKAKLRNKA-----------MRGSAHAQQR--------------------------LDRRSLCEAILVGGHVQSFIDFFYLTHRPAPVQDETASADAPPAEIVVPAEEMAFMRARLEGAEDGRQSGDTAAIYAGYNALAKYFQDSRDPRTGVYFYEKCLEVARVTHDRRGEMAANRSLGAAFDRMGDAAAAAAYHERHQELAAAEDGDAEARAAAAELVGVYRKCAEGKEASGDYRGAIELWQKSVQAARTAHDRRAEGQACYRLGRTWIELGEPLKALTHLEDFETAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR-YALARAVASAGXXXXXXXXXXXXESADAARCAVGVAQANEMLEAYTQAVTGDLKALLDWKCNRVRP 411          
BLAST of mRNA_L-elsbetiae_contig831.17314.1 vs. uniprot
Match: A0A6S8CZB0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8CZB0_9STRA)

HSP 1 Score: 181 bits (460), Expect = 1.470e-48
Identity = 132/394 (33.50%), Postives = 202/394 (51.27%), Query Frame = 1
Query:  238 DRRGICEDVLAGGHVQTFVDFFYLTHRPVPAQ---DNTDPREGTT-------EIIVPKREMIFIRDNLVAAESARRRGDTAAVYKAYNSLAQYYQDMN-DPKTGVYFHEKCLEISRLTADRGGEMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDIAEEQKEANKSLINVYRKFAEERESEGHYEGSIEYWAKSLEAARSAGDQA-------ALGQACYRLGKAYTELEDPTRAVNYLEDFQNISTELDDLEGQGRAYEALAAVYQQSLGD-DDRALTLLQSYLDVASKTQNLGAQATACSNLGVLHSRRGQHSKAKDMFERNFVISRKVVNARQGGATTAVVDMSRAFLGIAAGNEMAEDYMNAVVG--DFGALLDWKSNRVRPAPAST 1356
            DRR +CE++   G V ++VDFFYLTHRP P +   ++ + R+  +       EI V   EM F+R+ L  AE +RR+GD   VY AY +LA+Y+Q  + D +TG+YF+EKCLE++R T D  GE++                               +D  +E ++A + L++VY+K A +++        I +  K+ +AAR+AGD+        ALG+A   L +A    +  T  ++ L+  + I   + + +G+G A   L  ++     D    AL  LQ  LD+A    +L AQA A   L   HSR G  +KA    E+NF IS++++ +  G A + V+D +R  LG+A G    EDY  A+    +   LL WK  RV P P  T
Sbjct:   44 DRRQLCEEIFKEGFVHSYVDFFYLTHRPDPNKIVYEDDEKRDIQSSLSRRDDEIQVSSIEMNFLREKLTTAEMSRRKGDGRGVYGAYCALAEYFQSRSADERTGIYFYEKCLEMARYTGDFRGELAANHDLGLAFCLLDENIIAINYFERQLEMAKNIDDEQEIRKALRQLMSVYQKAAAQQKE------PIPFLHKAHDAARTAGDEIDEARTALALGEAL--LNEAPRTKKTSTEILSILQTAEQIYKRIGNSQGEGSACAILGQLWLHDEDDTQSNALHFLQRSLDIAINNDDLSAQAKASQGLAEYHSRHGNRNKAVTFLEQNFEISKQLLAS--GRADSTVLDKARVLLGVAIGKAKIEDYFQALTSPNNLSHLLAWKLARV-PLPNYT 426          
BLAST of mRNA_L-elsbetiae_contig831.17314.1 vs. uniprot
Match: A0A812TFA7_9DINO (TTC29 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812TFA7_9DINO)

HSP 1 Score: 180 bits (456), Expect = 1.630e-47
Identity = 115/402 (28.61%), Postives = 192/402 (47.76%), Query Frame = 1
Query:  241 RRGICEDVLAGGHVQTFVDFFYLTHRPVPAQDNTDPREGTTEIIVPKREMIFIRDNLVAAESARRRGDTAAVYKAYNSLAQYYQDMNDPKTGVYFHEKCLEISRLTADR----------------GGEMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDIAEEQKEANKSLINVYRKFAEERESEGHYEGSIEYWAKSLEAARSAGDQAALGQACYRLGKAYTELEDPTRAVNYLEDFQNISTELDDLEGQGR-------AYEALAAVYQQSLGDDDRALTLLQSYLDVASKTQNLGAQATACSNLGVLHSRRGQHSKAKDMFERNFVISRKVVNA-----------RQGGATTAV---VDMSRAFLGIAAGNEMAEDYMNAVVGDFGALLDWKSNRV 1335
            +   C D+L  GH+  FVDFFYL+HR  P  D  +      ++ + + +M F+R  L AAE +RR G   AV  +Y  LA++Y D  D +T VYF+EKCLE+++   D                  G+                                 +    E + AN +L+  Y + A+  ++ G  +G++E   ++L AA + GD AA     + +G+ Y     P + + +L+ + ++S++    EG G        A+  LAA +  ++G  ++A   LQ +L V+ +  +L +QA AC++LG +H+RRGQ  +A   FE+++ + R +V A              GA  +V   V+ ++  LG+A GN     Y+N ++ D  ALL WK+ R 
Sbjct:   79 KESTCIDILTSGHINAFVDFFYLSHRADPTADRREGDGPPADVRLSQDDMAFLRTTLCAAEDSRRSGQVPAVLDSYAGLAEHYADRKDSRTAVYFYEKCLEVAQGVGDAVAELHTLHNLGTVHEGSGDTEHAIAYFEAHRDAAAAHQEAAGGVDGATSVAALPFQAEVRRANTALVRAYGQRAKALDTAGDAQGALETRLQALAAASATGDAAAEAATSFHVGRTYVANAQPEQGIKHLQRYLDLSSDPVTAEGAGALGAQRAAAFAGLAAAFH-AMGVTEKATACLQDFLAVSEEGGDLASQAHACASLGDIHNRRGQFKEAVKCFEKSYKLYRSLVLAGTSTRHASGEQADAGAPVSVHREVEHAKVHLGMARGNAAMGSYVNTIITDVSALLKWKNRRT 479          
BLAST of mRNA_L-elsbetiae_contig831.17314.1 vs. uniprot
Match: A0A6V1TCY9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TCY9_HETAK)

HSP 1 Score: 175 bits (444), Expect = 5.920e-46
Identity = 120/372 (32.26%), Postives = 170/372 (45.70%), Query Frame = 1
Query:  238 DRRGICEDVLAGGHVQTFVDFFYLTHRPVP--AQDNTDPREGTT--EIIVPKREMIFIRDNLVAAESARRRGDTAAVYKAYNSLAQYYQDMNDPKTGVYFHEKCLEISRLTADRGGEMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDIAEEQKEANKSLINVYRKFAEERESEGHYEGSIEYWAKSLEAARSAGDQAALGQACYRLGKAYTELEDPTRAVNYLEDFQNISTELDDLEGQGRAYEALAAVYQQSLGDDDRALTLLQSYLDVASKTQNLGAQATACSNLGVLHSRRGQHSKAKDMFERNFVISRKVVNARQGGATTAVVDMSRAFLGIAAGNEMAEDYMNAVVGDFGALLDWKSNRVRP 1341
            +RR +CE +LA G+VQ+FVDFFYLTHRP P  A   T   +     EI V  +EM+F+  +L  AE ARR GDT  VY+++N LAQY+Q + DPKTGVYF+EKCLEI+RLT DRG EM                                  + EEQ+ AN  L+ +Y KFAE++E+    + +++++ K L+AAR+AGD+A+ G A ++LG+A+     P +A                                                                                            R +VNA QG   T +VD++R +LG+A  N +   Y +A+  D G LL+WK+ R  P
Sbjct:  103 ERRQLCEQILANGYVQSFVDFFYLTHRPDPKAALQATGAADAAAPGEIDVSPQEMVFLSKHLTTAEKARRLGDTNVVYQSFNVLAQYFQQLEDPKTGVYFYEKCLEIARLTNDRGAEMLAHHCLGAAHEGMGELLPAAAYHERHRDLAAEDALEEEQRTANAELVKIYWKFAEQKEAARDGDLAVQFYEKCLQAARAAGDRASEGVAAFKLGRAFAREGQPQQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXETCRSLVNAGQGA--TPLVDLARTYLGLARANALLGRYYHALRCDLGELLEWKTRRKEP 471          
BLAST of mRNA_L-elsbetiae_contig831.17314.1 vs. uniprot
Match: A0A1V9YM78_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YM78_9STRA)

HSP 1 Score: 172 bits (435), Expect = 7.630e-45
Identity = 113/367 (30.79%), Postives = 179/367 (48.77%), Query Frame = 1
Query:  235 VDRRGICEDVLAGGHVQTFVDFFYLTHRPVPAQDNTDPREGTTEIIVPKREMIFIRDNLVAAESARRRGDTAAVYKAYNSLAQYYQDMNDPKTGVYFHEKCLEISRLTADRGGEMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDIAEEQKEANKSLINVYRKFAEERESEGHYEGSIEYWAKSLEAARSAGDQAALGQACYRLGKAYTELEDPTRAVNYLEDFQNISTELDDLEGQGRAYEALAAVYQQSLGDDDRALTLLQSYLDVASKTQNLGAQATACSNLGVLHSRRGQHSKAKDMFERNFVISRKVVNARQGGATTAVVDMSRAFLGIAAGNEMAEDYMNAVVGDFGALLDWKSNRV 1335
            VD+R +C  VL  G VQ+FVD FYL HR V      D  +    + V   +M F+RDNL  AE ARR+GD   V+++Y  LA ++    D +TGV+FHEKCLEI+R+  ++  E++                               +    ++  A   L  VY + A + E  G ++ +I    K L+ AR A D  ++    +R+G  +  ++  T A+ YL+D+  +   L D++G+ +AY ALA  ++ +LG                       AQA AC  LG+L+S+  +   A +M ERNF + R   N++   + T ++D +R  LG+  G+     +++ V GD  A L WK+ R 
Sbjct:   92 VDKREVCAQVLRSGLVQSFVDLFYLVHR-VDTHVGPDGTDKKLPVDVSSAQMSFLRDNLTTAEQARRQGDVIQVFESYERLASHFIAAADLRTGVFFHEKCLEIARIARNQDFEIAALENLGNAYYGLKEFAKAQENHELHVQLVRLLRPEADKVVALVELCKVYEQVAAQLERAGDFDRAIGIHIKYLDCARDANDMQSVAAGQFRIGCCHNAMQQATDALLYLKDYLVLCKNLGDVDGECKAYAALATTFE-ALGHTQXXXXXXXXXXXXXXXXXXXVAQAEACRRLGLLYSKTREFGLALEMMERNFELIRN--NSK---SDTRLLDTARTSLGVIRGHHKFNAFVDFVTGDVNAFLAWKATRT 451          
BLAST of mRNA_L-elsbetiae_contig831.17314.1 vs. uniprot
Match: A0A067CVD9_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CVD9_SAPPC)

HSP 1 Score: 169 bits (429), Expect = 5.850e-44
Identity = 117/369 (31.71%), Postives = 181/369 (49.05%), Query Frame = 1
Query:  235 VDRRGICEDVLAGGHVQTFVDFFYLTHRPVPAQDNTDPREGTTEIIVPKREMIFIRDNLVAAESARRRGDTAAVYKAYNSLAQYYQDMNDPKTGVYFHEKCLEISRLTADRGGEMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDIAEEQKEANKSLINVYRKFAEERESEGHYEGSIEYWAKSLEAARSAGD--QAALGQACYRLGKAYTELEDPTRAVNYLEDFQNISTELDDLEGQGRAYEALAAVYQQSLGDDDRALTLLQSYLDVASKTQNLGAQATACSNLGVLHSRRGQHSKAKDMFERNFVISRKVVNARQGGATTAVVDMSRAFLGIAAGNEMAEDYMNAVVGDFGALLDWKSNRV 1335
            VD+R +C  VL  G VQ+FVD FYL HR V  Q   D  +    I V   +M F+RDNL  AE+ARR+GD   V+++Y  LA ++    D +TGV+F+EKCLEI+R+  ++  E+                                +    E+  A + L  VY + A  +E  G Y+ +I    K L+ AR A D    ALGQ  YR+G  +  +   T A+ YL+D+  +   L D++G+ +AY ALA  ++ +LG                         A AC  LG+L+S+  + + A +M ERNF + R   N+++    T ++D++R  LG+  G+     +++ V  D    L WK++R 
Sbjct:   94 VDKREVCAQVLKSGLVQSFVDLFYLVHR-VDTQIGPDGADKKLPIGVSPAQMSFLRDNLTTAETARRQGDVIQVFESYERLATHFTAARDLRTGVFFYEKCLEIARIARNQDFEIVALENLGNAYYGLQEFKKAQDNHELHVQLVRLMRPEAEKIRALRELCKVYEQVASIQERAGAYDQAIHIHIKFLDCARDANDLPSVALGQ--YRIGCCHNAMSQATDALLYLKDYLVLCKNLGDVDGECKAYAALATTFE-ALGHTXXXXXXXXXXXXXXXXXXXXXXXAEACRRLGLLYSKTREFALALEMMERNFELIRN--NSKRD---TRLLDVARTSLGVIRGHHQFNAFVDFVTSDVPTFLKWKASRA 453          
BLAST of mRNA_L-elsbetiae_contig831.17314.1 vs. uniprot
Match: A0A024U1C7_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U1C7_9STRA)

HSP 1 Score: 166 bits (421), Expect = 3.220e-43
Identity = 115/374 (30.75%), Postives = 181/374 (48.40%), Query Frame = 1
Query:  235 VDRRGICEDVLAGGHVQTFVDFFYLTHRPVPAQDNTDPREGTTEIIVPKREMIFIRDNLVAAESARRRGDTAAVYKAYNSLAQYYQDMNDPKTGVYFHEKCLEISRLTADRGGEMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDIAEEQKEANKS-------LINVYRKFAEERESEGHYEGSIEYWAKSLEAARSAGDQAALGQACYRLGKAYTELEDPTRAVNYLEDFQNISTELDDLEGQGRAYEALAAVYQQSLGDDDRALTLLQSYLDVASKTQNLGAQATACSNLGVLHSRRGQHSKAKDMFERNFVISRKVVNARQGGATTAVVDMSRAFLGIAAGNEMAEDYMNAVVGDFGALLDWKSNRV 1335
            VD+R +C  VL  G VQ+FVD FYL HR V      D +E    + +   ++ F+RD+L AAE ARR+GD   V+++Y  LA Y+ D  D +TGV+FHEKCLEI+R++ ++  E++                               +  A    E+N++       L  VY + A + E++  Y+ +I   AK L+ A+ A D   +    YR+G  +  +  PT A+ YL+D+  +   L D +G+  AY ALA                            N+ AQA AC  LG+L+S     + A +M ERNF +   + NA +  + TA++D +R  LG+   ++    +++ V  D    L WK++R 
Sbjct:   42 VDKREVCAAVLREGLVQSFVDLFYLVHR-VDTHVTADGQEMKEPVAISPAQIKFLRDHLTAAEKARRQGDVIHVFESYEKLAVYFMDQQDLRTGVFFHEKCLEIARISRNQDFELAALENLGNAYYGLKEFHKAKENHELHLALVTQMRAAGAH-ESNRAEAAAMAQLSKVYEEVARQHETKREYDQAIAIHAKFLQCAQEAKDLTNVAAGHYRIGCCFNAMNQPTDALVYLKDYLVMCKNLGDTDGECNAYAALATTXXXXXXXXXXXXXXXXXXXXXXXXX-NVVAQAEACRRLGLLYSAAKDFNLAAEMMERNFDL---IKNATK--SDTALLDQARISLGVIRAHQKFHLFVDFVTSDLDGFLKWKASRT 407          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig831.17314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1A7_ECTSI1.760e-19473.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KCG2_9PHAE5.620e-14059.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1CI93_9STRA5.510e-7046.74Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A836CHD2_9STRA5.120e-6834.30Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6S8CZB0_9STRA1.470e-4833.50Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A812TFA7_9DINO1.630e-4728.61TTC29 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A6V1TCY9_HETAK5.920e-4632.26Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1V9YM78_9STRA7.630e-4530.79Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A067CVD9_SAPPC5.850e-4431.71Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A024U1C7_9STRA3.220e-4330.75Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig831contigL-elsbetiae_contig831:24756..30322 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score558.1
Seed ortholog evalue3.7e-156
Seed eggNOG ortholog2880.D7G1A7
Preferred nameTTC29
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Tetratricopeptide repeat
EggNOG OGs2CDDH@1,2QQ2U@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-12_005200.1
Exons9
Model size1371
Cds size1356
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig831.17314.1prot_L-elsbetiae_contig831.17314.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig831 24756..30307 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816914.1665184-CDS-L-elsbetiae_contig831:24755..249131622816914.1665184-CDS-L-elsbetiae_contig831:24755..24913Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig831 24756..24913 -
1691683908.334451-CDS-L-elsbetiae_contig831:24755..249131691683908.334451-CDS-L-elsbetiae_contig831:24755..24913Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig831 24756..24913 -
1622816914.1804082-CDS-L-elsbetiae_contig831:25454..255831622816914.1804082-CDS-L-elsbetiae_contig831:25454..25583Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig831 25455..25583 -
1691683908.3471618-CDS-L-elsbetiae_contig831:25454..255831691683908.3471618-CDS-L-elsbetiae_contig831:25454..25583Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig831 25455..25583 -
1622816914.1927788-CDS-L-elsbetiae_contig831:25898..259891622816914.1927788-CDS-L-elsbetiae_contig831:25898..25989Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig831 25899..25989 -
1691683908.3563101-CDS-L-elsbetiae_contig831:25898..259891691683908.3563101-CDS-L-elsbetiae_contig831:25898..25989Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig831 25899..25989 -
1622816914.2036898-CDS-L-elsbetiae_contig831:26532..266321622816914.2036898-CDS-L-elsbetiae_contig831:26532..26632Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig831 26533..26632 -
1691683908.3651383-CDS-L-elsbetiae_contig831:26532..266321691683908.3651383-CDS-L-elsbetiae_contig831:26532..26632Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig831 26533..26632 -
1622816914.2144485-CDS-L-elsbetiae_contig831:26932..271021622816914.2144485-CDS-L-elsbetiae_contig831:26932..27102Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig831 26933..27102 -
1691683908.3738687-CDS-L-elsbetiae_contig831:26932..271021691683908.3738687-CDS-L-elsbetiae_contig831:26932..27102Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig831 26933..27102 -
1622816914.2262912-CDS-L-elsbetiae_contig831:27574..276791622816914.2262912-CDS-L-elsbetiae_contig831:27574..27679Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig831 27575..27679 -
1691683908.3826318-CDS-L-elsbetiae_contig831:27574..276791691683908.3826318-CDS-L-elsbetiae_contig831:27574..27679Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig831 27575..27679 -
1622816914.23717-CDS-L-elsbetiae_contig831:28265..284101622816914.23717-CDS-L-elsbetiae_contig831:28265..28410Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig831 28266..28410 -
1691683908.3965616-CDS-L-elsbetiae_contig831:28265..284101691683908.3965616-CDS-L-elsbetiae_contig831:28265..28410Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig831 28266..28410 -
1622816914.2494147-CDS-L-elsbetiae_contig831:29339..294781622816914.2494147-CDS-L-elsbetiae_contig831:29339..29478Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig831 29340..29478 -
1691683908.4077168-CDS-L-elsbetiae_contig831:29339..294781691683908.4077168-CDS-L-elsbetiae_contig831:29339..29478Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig831 29340..29478 -
1622816914.2600875-CDS-L-elsbetiae_contig831:29988..303071622816914.2600875-CDS-L-elsbetiae_contig831:29988..30307Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig831 29989..30307 -
1691683908.417016-CDS-L-elsbetiae_contig831:29988..303071691683908.417016-CDS-L-elsbetiae_contig831:29988..30307Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig831 29989..30307 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816914.2730906-UTR-L-elsbetiae_contig831:30307..303221622816914.2730906-UTR-L-elsbetiae_contig831:30307..30322Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig831 30308..30322 -
1691683908.426129-UTR-L-elsbetiae_contig831:30307..303221691683908.426129-UTR-L-elsbetiae_contig831:30307..30322Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig831 30308..30322 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig831.17314.1

>prot_L-elsbetiae_contig831.17314.1 ID=prot_L-elsbetiae_contig831.17314.1|Name=mRNA_L-elsbetiae_contig831.17314.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=452bp
MQAVGVTTVPARVSAPQRKSRLRNRSAANTGNPETAEQHGSVAAARRPGG
STSTSKSSSHNPQQQMTEQDLEGVDRRGICEDVLAGGHVQTFVDFFYLTH
RPVPAQDNTDPREGTTEIIVPKREMIFIRDNLVAAESARRRGDTAAVYKA
YNSLAQYYQDMNDPKTGVYFHEKCLEISRLTADRGGEMSANHRLGMAYEK
MGDVVTATNFHERHQELATAVDIAEEQKEANKSLINVYRKFAEERESEGH
YEGSIEYWAKSLEAARSAGDQAALGQACYRLGKAYTELEDPTRAVNYLED
FQNISTELDDLEGQGRAYEALAAVYQQSLGDDDRALTLLQSYLDVASKTQ
NLGAQATACSNLGVLHSRRGQHSKAKDMFERNFVISRKVVNARQGGATTA
VVDMSRAFLGIAAGNEMAEDYMNAVVGDFGALLDWKSNRVRPAPASTAKK
H*
back to top

mRNA from alignment at L-elsbetiae_contig831:24756..30322-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig831.17314.1 ID=mRNA_L-elsbetiae_contig831.17314.1|Name=mRNA_L-elsbetiae_contig831.17314.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5567bp|location=Sequence derived from alignment at L-elsbetiae_contig831:24756..30322- (Laminarionema elsbetiae ELsaHSoW15)
CAGGCTATTGACGAGATGCAGGCAGTCGGTGTCACCACCGTGCCAGCTCG CGTCAGCGCGCCGCAGCGCAAGTCTCGGCTGCGCAACCGTTCAGCCGCCA ACACGGGGAACCCGGAGACGGCCGAACAGCACGGCTCGGTGGCTGCGGCG CGCCGTCCGGGCGGAAGCACCAGCACCAGCAAAAGCAGCAGCCACAACCC TCAACAGCAGATGACAGAGCAGGATCTTGAGGGCGTGGACCGGAGAGGAA TTTGCGAGGACGTCTTGGCGGGGGGACACGTGCAGACATTCGTGGACTTC TTCTACCTCACGCACAGGCCGGTCCCCGCTCAAGGTGAGGCTTCGTGAGA ACGTCTTGCCTTTATAATATCCCAGCAGCGCGGCGTCTTCTTCCGGGACG TCATTGTGCTTCGTAGTTAACTTGTGCAGGGTCGGCATTGAATATTGTTG CTTCGTGCTTGTCCTTGTACGAGTATTACTGCCTGTGCAGATGGTCTCTA CTTGCCATGCTCTGCCGCAGCAAGAGGTTCCTGTGTATTGCATGATATAC ACAGGCAGTAATTTTGAAGGTTAATGAAAGTTGAAGACACAAACGCGTGT GCCGCCATCTGCACGCGTCCGTTCGTTGTCCAGCCCTTGTGCAATACCTT CTTCCGATCAGACCTACGTTGACTCAAAGCTGGACGCAGGTAAACAGATC GATCCTTTGAAGTGTGTGTGCAACTTTGTCGCACAGCGACCATACCCATC CCTCAGCCCCTATGTGGTGCTGTTCCTTGTCGACTTGCGGTAAAATAACC AACTCGCTGGCGTGTTCTCCTCTAACTAAAATTACCGTTTGCAGACAACA CCGATCCGCGGGAAGGTACTACGGAAATCATCGTGCCGAAGAGAGAGATG ATTTTCATCAGGGACAATTTGGTCGCGGCTGAGAGCGCGCGACGGCGAGG GGACACTGCCGCTGTGTACAAGGCTTACAACAGGTGGGTTGATAATACAA AAAGTAGAATAGCCATGTAGCAAATATCGTTCGATGAAGCATCATCTCCT CCAACGCGTTGCTACAAGTCTTGTCCTCGTAAAGGTTATAGAAAATCACG AACAAGGGGACAACGGATTCTTTAAACTTTGGTGGGTAGCAATAACCGCC CCGTGATGCGGTGCTGGATATATATCCTGTGAACCGCAGAGGCACGACAA CGAACAAAGCGCAGGACTGGTGTTGGATTCATTTTTCGGGGGGCGGGGGG GGGGGGGTCAGCCGGACCAGCAAAGGCATTTTTCCCCTTGGGCCTGTTGA GTCTTTTTTGCCGCAAAGGTATTCGAAACCACTTCGAGTGCAAAGATAAA ACTTATCATTTTCGCTTTTGTATATTGTAGAGAGCTCGCGGTGCTGTTTC ATCGGTTTGCGATGTTTCAGCCCAAGCGCGTTGAAACCCTCTTCGACTGT TCGCCGTACGGTGTCCATCCACACGTTGGTGTCACGGCTGCCAATGTAGG AGGCCGACGCACACACAAACCATACCTCGAAGCATGTTTACGGTAAGCAC ACACTATCGGTATCAGCCACTCTCTGGTCGGGATCTTTCTCCACGCTCAA GTCGTTCCGTCTGAGCCTTCGTCTTTTACATTCGTTTGTACACTCTCTCC TCGTCGGTCGCTTTCTCTCTCTCTCTCTCTCTCTCTCTCCTACTCGCCCT CCGCCCGGCGTGATCGTTTCGACTCTTCTGGTGCGTACGTGAAAACGGCG TACCCGACCCACATCAAACGACGCACGAACCTCACTCGCTGCACGACATA TATCCGAAACACGGCGTGAAAAAAAAACGGACATGAAAAAACGCAAACGA AAAAAACACTTCTGTCTTGTGTGGCGAAAACGGCACGGAACGTTTCTCCG GTGAAAAATCAGCCTGGCGCAGTACTACCAGGATATGAACGACCCCAAGA CAGGCGTGTACTTTCACGAGAAGTGCCTCGAGATTAGCCGCCTGACCGCA GACAGGGGGGGCGAGATGAGTGCCAACCATCGACTGGGAATGGCCTACGA AAAAATGGTGAGTAACATATGCTGAACGAATAGGAGCATACAGGTCTAGG GGGGGGGTTGTTGATCTAAGGCTGCGAAATAGCCTCTTGCGAGCTGGATC GACTCGGAAAATGAACGTACAGGAGTACGACCAGCCCAGGCCAAGAAGGA ATGATTCTCGACGTATAAAATACAGTAGGTGCTGCTGTCTTGGTCGTTTT CTGCTGGCCAAGAATGTTCGGAAGATCCCCTTCAGCCACCCACCAGCGGT GTGGTTACGCTACACAACGTTTTCTTTCGGGGCGCTTCAAAACGTGCACC AAATAAAAAGCAGCTGCGACACGGTTAACCCACGATGATACGTGCAGGTA AGGAGGCATCTAGGCCACGGCGAAGCCCATTTCGATTCTCCCAAACTCTA CACAAACTCCCTCATGTTTTCTTTTGCTGTACTACTGTATGTACACTATA TGTTATGAAGGAAAACACACACACACACATCAATGTTTGTTTCATCAGTT CCACGCATCAGCAACCACAACAACAACCCAAAACACCACAATAGCGACTT GGAACCTGTCCTTCACCCGCGCCAATTATTTTGGATTCGCAAGGGGGATG TGGTGACGGCGACGAACTTCCACGAGAGGCACCAAGAGCTGGCTACGGCG GTTGACATCGCGGAAGAACAGAAGGAAGCCAACAAGTCGCTTATCAACGT GAGCGACTGAGGGCTCACACGGGACCTTCGCCTTCCGCGAAACCCTTGCT GCAGAGCTACGTGCATCATTCATATCTACACATACAGAGCGCGCCATCAC TCAAGAACCTCCTATTATTTTGAGGCGAGGCTCGGATTCCCGTTTCTCTA TTGTACACATGTGGGGAAACCAATTGCCTCCATTTCGCCTTTATATGGGT TTTAGTGAGAGGTTCTTATCCGGATGTCTCAGATACGCCTGAAGTTCTTA TGTTTGGATTTTGTTTTAGGCTGGGTTTCTTAATTCCCAAGTTCTTAAGC GGTGCCGCGTTCTGTATTCACTGGCGGACACCGGGAAAATCAGCTGCCAT CAGTCGATGCAGACTGAGCTGCTTCGCCACATACTTCGCGGCCGCAGCTC GCCACCACAGGGCACCCCTCCCCCCCCCCGCCCCTACCCAGTCAGCTTCC CTCTTGTTCTGTGCTTGCAGGTATACAGAAAGTTCGCGGAGGAGCGCGAG TCAGAGGGGCACTACGAGGGGTCCATCGAGTACTGGGCCAAGAGCCTGGA GGCGGCGAGATCGGCGGGGGACCAGGCCGCTCTGGGACAGGCCTGCTACC GTCTCGGCAAGGCTTACACGGAGCTCGAGGATCCCACGAGGTACGCGATG ACGGTAAAATTGAATCCCCCCCCCCCCCCCCATGGATCCAAACGACCTCG TCTTACCCGCATGCTGCGTGGATCCAACGATCTTGTCCTACCCGCCTGTA CATCGCAGAACGGCTGTTGTATTTCTGCCCCCGCCGCTCACTATATTTGA GTAGGAGTAAATAACACATGCGAGAGTTTTTGTGAACATGTATGCAGCCG CGTCCACGGCCAAGGTTGGATCCAAAGTTCGAGCACCTGCTGGTGACGCC CATCTATCTTATCTGCCTCTCCCCTACCGTGACTTCCCAGAGCGGTCAAC TACTTAGAGGACTTCCAGAACATCTCGACGGAGCTCGACGATCTCGAGGG GCAGGGGAGGGCGTACGAAGCCCTGGCGGCGGTGTACCAAGTAAGAAGAG AGGGAGAATGGAGGGGGCGAAGGTAAATATGATCGAGTGTCTTGTTGCGC CCACGATTACCCCAAAGCACGAGAAGAACTGAGGAGGAAATAGTCAACGG TGGGGCGCGGGTGTCGAGCTACGTAGCTTTCTACGGCAGTGTAGTACATA TGTAGAAGCAAATATGAGTCGCGTTCGAGGGGCACACGCAATTCTCCATT TAATATGCCATCGACTCCTGTTGCGTTTGGGTTCTTCTCCACTCATCTGC CCTCAAAATTCCACCCCACCCACCCACCCACCCACCCACCCACCCACCCA CCCTGCCATGTGCCAGGGTTGGACTCACTACTGCACCATAGACTACTCGA GATGGAACTAAAAGACAGCGTATCGACTCGATCTCCCACATGCAAAATAT ATCTAATCTACACTCCACTTTAGCGGGCGCATGTGCTGCAAAGCACCCGC CCGCCCGCCCACGATGTGTCGACGTGGCCTTACATATTTATTTGCACGCG TATTGAATTGGCTCCTCGGGTCTGATTCGAGAGCAGAGCCTGGGCGACGA CGACAGGGCGCTCACTCTGCTTCAAAGCTACCTCGACGTCGCCAGCAAGA CGCAAAACCTAGGAGCCCAGGCGAGTTGTTGCGACCTGTTGCAGCTGCTC CTTCTGCGAATAGCAGGCAAAGGACAGCCTACATGCACACGCAAGGCTGT ATTTTGCCTGTTGCTGTTCGCAGCTGGCACTGTCGGCTACATAGTGTAGC TCGACCAGTCGGTGGGTGAAGATAGGACGGGGAGGGGAGGGCAGGAAAGT AGAGGGTGAGGTTGGTTGCTGATTTTGCTTTACTCAAATGTAGCTACATA TGCAGAGTTGATTTGAGAGGAGAAACCGCAACTAACTGCCACCGGCGTCC GTTCCGATTCACGCTCGCGCGCGATCGTTCCACAGGAAGCGGCTTGCAGC AACCTTGGGGTACTGCACAGCAGGCGTGGACAGCACTCCAAGGCCAAGGA CATGTTCGAGCGGAATTTTGTCATCAGCCGCAAGGTGGTCAACGCCCGCC AGGGGGGGGCGACAACAGGTAGCCTACATAGTCTAGGCACATCTTGTATT CTAGTACTGGATAACTAGTGGATGCCCCCCACATGCACCTCTTGCCCCAC CTCATCCGCCACCCCCCCCACGCAACAAGAAATACGGAACATTATATTAT GAATTTTGACGTTAGAACGCGTTGACCACTCCTGCCACCCGGGCCTAGCA GCCTAGACTCTTGTGAGCCACTCGAACGGGGCGCCGTACAATACATCCAT GTGGTGCGTGCCACCCTTTCCTCGGTCGCTGCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCCCCCGCGACGCCCTCCCCGCCCCCCCCCCCACCCACCCA CCCCCACNNNNNNNNNNGGGGGGCCCCACACAACACCCTTGTGGGGTTTG CCCCCCTTTTCCCGTTGGGCGCCCCCCCCCCCCCCCCCAGCGCCATACGG GCTAAAGGCCGTATTTGCCGTACACCACACAGAGCATCCACTTCACACAA TATTTTCGCCTCGCCCCTGCCACCGGCGCCCCGCAATCTATGATGCCTCT GACGCACAGCCGTTGTGGATATGTCCCGCGCCTTCTTGGGGATCGCCGCG GGCAACGAGATGGCGGAAGACTACATGAACGCGGTTGTGGGCGACTTCGG TGCTCTGCTCGACTGGAAGAGCAATCGGGTTAGGCCCGCCCCTGCTTCCA CCGCTAAGAAACACTAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig831:24756..30322-

>mRNA_L-elsbetiae_contig831.17314.1 ID=mRNA_L-elsbetiae_contig831.17314.1|Name=mRNA_L-elsbetiae_contig831.17314.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2712bp|location=Sequence derived from alignment at L-elsbetiae_contig831:24756..30322- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGGCAGTCGGTGTCACCACCGTGCCAGCTCGCGTCAGCGCGCCGCA
GCGCAAGTCTCGGCTGCGCAACCGTTCAGCCGCCAACACGGGGAACCCGG
AGACGGCCGAACAGCACGGCTCGGTGGCTGCGGCGCGCCGTCCGGGCGGA
AGCACCAGCACCAGCAAAAGCAGCAGCCACAACCCTCAACAGCAGATGAC
AGAGCAGGATCTTGAGGGCGTGGACCGGAGAGGAATTTGCGAGGACGTCT
TGGCGGGGGGACACGTGCAGACATTCGTGGACTTCTTCTACCTCACGCAC
AGGCCGGTCCCCGCTCAAGATGCAGGCAGTCGGTGTCACCACCGTGCCAG
CTCGCGTCAGCGCGCCGCAGCGCAAGTCTCGGCTGCGCAACCGTTCAGCC
GCCAACACGGGGAACCCGGAGACGGCCGAACAGCACGGCTCGGTGGCTGC
GGCGCGCCGTCCGGGCGGAAGCACCAGCACCAGCAAAAGCAGCAGCCACA
ACCCTCAACAGCAGATGACAGAGCAGGATCTTGAGGGCGTGGACCGGAGA
GGAATTTGCGAGGACGTCTTGGCGGGGGGACACGTGCAGACATTCGTGGA
CTTCTTCTACCTCACGCACAGGCCGGTCCCCGCTCAAGACAACACCGATC
CGCGGGAAGGTACTACGGAAATCATCGTGCCGAAGAGAGAGATGATTTTC
ATCAGGGACAATTTGGTCGCGGCTGAGAGCGCGCGACGGCGAGGGGACAC
TGCCGCTGTGTACAAGGCTTACAACAGACAACACCGATCCGCGGGAAGGT
ACTACGGAAATCATCGTGCCGAAGAGAGAGATGATTTTCATCAGGGACAA
TTTGGTCGCGGCTGAGAGCGCGCGACGGCGAGGGGACACTGCCGCTGTGT
ACAAGGCTTACAACAGCCTGGCGCAGTACTACCAGGATATGAACGACCCC
AAGACAGGCGTGTACTTTCACGAGAAGTGCCTCGAGATTAGCCGCCTGAC
CGCAGACAGGGGGGGCGAGATGAGTGCCAACCATCGACTGGGAATGGCCT
ACGAAAAAATGCCTGGCGCAGTACTACCAGGATATGAACGACCCCAAGAC
AGGCGTGTACTTTCACGAGAAGTGCCTCGAGATTAGCCGCCTGACCGCAG
ACAGGGGGGGCGAGATGAGTGCCAACCATCGACTGGGAATGGCCTACGAA
AAAATGGGGGATGTGGTGACGGCGACGAACTTCCACGAGAGGCACCAAGA
GCTGGCTACGGCGGTTGACATCGCGGAAGAACAGAAGGAAGCCAACAAGT
CGCTTATCAACGGGGATGTGGTGACGGCGACGAACTTCCACGAGAGGCAC
CAAGAGCTGGCTACGGCGGTTGACATCGCGGAAGAACAGAAGGAAGCCAA
CAAGTCGCTTATCAACGTATACAGAAAGTTCGCGGAGGAGCGCGAGTCAG
AGGGGCACTACGAGGGGTCCATCGAGTACTGGGCCAAGAGCCTGGAGGCG
GCGAGATCGGCGGGGGACCAGGCCGCTCTGGGACAGGCCTGCTACCGTCT
CGGCAAGGCTTACACGGAGCTCGAGGATCCCACGAGGTATACAGAAAGTT
CGCGGAGGAGCGCGAGTCAGAGGGGCACTACGAGGGGTCCATCGAGTACT
GGGCCAAGAGCCTGGAGGCGGCGAGATCGGCGGGGGACCAGGCCGCTCTG
GGACAGGCCTGCTACCGTCTCGGCAAGGCTTACACGGAGCTCGAGGATCC
CACGAGAGCGGTCAACTACTTAGAGGACTTCCAGAACATCTCGACGGAGC
TCGACGATCTCGAGGGGCAGGGGAGGGCGTACGAAGCCCTGGCGGCGGTG
TACCAAAGCGGTCAACTACTTAGAGGACTTCCAGAACATCTCGACGGAGC
TCGACGATCTCGAGGGGCAGGGGAGGGCGTACGAAGCCCTGGCGGCGGTG
TACCAACAGAGCCTGGGCGACGACGACAGGGCGCTCACTCTGCTTCAAAG
CTACCTCGACGTCGCCAGCAAGACGCAAAACCTAGGAGCCCAGGCGACAG
AGCCTGGGCGACGACGACAGGGCGCTCACTCTGCTTCAAAGCTACCTCGA
CGTCGCCAGCAAGACGCAAAACCTAGGAGCCCAGGCGACGGCTTGCAGCA
ACCTTGGGGTACTGCACAGCAGGCGTGGACAGCACTCCAAGGCCAAGGAC
ATGTTCGAGCGGAATTTTGTCATCAGCCGCAAGGTGGTCAACGCCCGCCA
GGGGGGGGCGACAACAGCGGCTTGCAGCAACCTTGGGGTACTGCACAGCA
GGCGTGGACAGCACTCCAAGGCCAAGGACATGTTCGAGCGGAATTTTGTC
ATCAGCCGCAAGGTGGTCAACGCCCGCCAGGGGGGGGCGACAACAGCCGT
TGTGGATATGTCCCGCGCCTTCTTGGGGATCGCCGCGGGCAACGAGATGG
CGGAAGACTACATGAACGCGGTTGTGGGCGACTTCGGTGCTCTGCTCGAC
TGGAAGAGCAATCGGGTTAGGCCCGCCCCTGCTTCCACCGCTAAGAAACA
CTAACCGTTGTGGATATGTCCCGCGCCTTCTTGGGGATCGCCGCGGGCAA
CGAGATGGCGGAAGACTACATGAACGCGGTTGTGGGCGACTTCGGTGCTC
TGCTCGACTGGAAGAGCAATCGGGTTAGGCCCGCCCCTGCTTCCACCGCT
AAGAAACACTAA
back to top