mRNA_L-elsbetiae_contig831.17313.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig831.17313.1
Unique NamemRNA_L-elsbetiae_contig831.17313.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig831.17313.1 vs. uniprot
Match: D7G1A8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1A8_ECTSI)

HSP 1 Score: 232 bits (591), Expect = 3.250e-74
Identity = 144/192 (75.00%), Postives = 148/192 (77.08%), Query Frame = 1 
Query:   94 AAGISSLFKKKRGKK---TKGSNLNNDSGLPKTEEKPKIEKLQEILGGPDPADDDGWADVVEKKSVVATGGKQVSDLINMTALMTEDESTAVKLEKQDIKQAFHDARTVKEAEKKEDAPEPEKKEEAKVEEAPKSKGLSGDIFGGXXXXXXXXXXXXXXXXRMEERELKQRQEELSVENTSAFPSLKDAMSA 660
            AAGISSLF KK+GKK   TKGSNLN DSG+PKTEEKPKIEKLQEILGGP PA+DDGW DVVEKKSVVATGGK VSDLI+MTALMTEDESTA KLEKQDIKQAFHDARTVKEAEKKE               A K KGLSGDIFGG                RMEERELKQRQE LSV NTSAFPSLKDAMSA
Sbjct:    8 AAGISSLFAKKKGKKGKKTKGSNLNLDSGIPKTEEKPKIEKLQEILGGPGPAEDDGWDDVVEKKSVVATGGKHVSDLIDMTALMTEDESTAAKLEKQDIKQAFHDARTVKEAEKKEXXX---XXXXXXXXTATKPKGLSGDIFGGGAARSAGGLGGGWKQ-RMEERELKQRQEALSVNNTSAFPSLKDAMSA 195
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig831.17313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1A8_ECTSI3.250e-7475.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig831contigL-elsbetiae_contig831:14247..18990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_005190.1
Exons4
Model size665
Cds size663
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig831.17313.1prot_L-elsbetiae_contig831.17313.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig831 14247..18990 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816914.0988646-CDS-L-elsbetiae_contig831:14246..144311622816914.0988646-CDS-L-elsbetiae_contig831:14246..14431Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig831 14247..14431 +
1691683908.2864552-CDS-L-elsbetiae_contig831:14246..144311691683908.2864552-CDS-L-elsbetiae_contig831:14246..14431Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig831 14247..14431 +
1622816914.1104305-CDS-L-elsbetiae_contig831:16610..167421622816914.1104305-CDS-L-elsbetiae_contig831:16610..16742Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig831 16611..16742 +
1691683908.2963285-CDS-L-elsbetiae_contig831:16610..167421691683908.2963285-CDS-L-elsbetiae_contig831:16610..16742Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig831 16611..16742 +
1622816914.1219492-CDS-L-elsbetiae_contig831:17606..176721622816914.1219492-CDS-L-elsbetiae_contig831:17606..17672Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig831 17607..17672 +
1691683908.306902-CDS-L-elsbetiae_contig831:17606..176721691683908.306902-CDS-L-elsbetiae_contig831:17606..17672Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig831 17607..17672 +
1622816914.1337008-CDS-L-elsbetiae_contig831:18710..189901622816914.1337008-CDS-L-elsbetiae_contig831:18710..18990Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig831 18711..18990 +
1691683908.3197966-CDS-L-elsbetiae_contig831:18710..189901691683908.3197966-CDS-L-elsbetiae_contig831:18710..18990Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig831 18711..18990 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig831.17313.1

>prot_L-elsbetiae_contig831.17313.1 ID=prot_L-elsbetiae_contig831.17313.1|Name=mRNA_L-elsbetiae_contig831.17313.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=221bp
YALHGRSSCGIDISSPCLSQQGIMTSEAPPPAAGISSLFKKKRGKKTKGS
NLNNDSGLPKTEEKPKIEKLQEILGGPDPADDDGWADVVEKKSVVATGGK
QVSDLINMTALMTEDESTAVKLEKQDIKQAFHDARTVKEAEKKEDAPEPE
KKEEAKVEEAPKSKGLSGDIFGGGAARSGGGGLGGGWKKRMEERELKQRQ
EELSVENTSAFPSLKDAMSA*
back to top

mRNA from alignment at L-elsbetiae_contig831:14247..18990+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig831.17313.1 ID=mRNA_L-elsbetiae_contig831.17313.1|Name=mRNA_L-elsbetiae_contig831.17313.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4744bp|location=Sequence derived from alignment at L-elsbetiae_contig831:14247..18990+ (Laminarionema elsbetiae ELsaHSoW15)
TACGCACTACACGGGCGATCATCGTGCGGCATCGATATCTCTTCTCCTTG
TCTCTCACAGCAGGGGATCATGACGTCCGAGGCACCTCCTCCTGCCGCGG
GCATTTCCTCACTTTTCAAAAAGAAGAGGGGCAAGAAAACCAAAGGCTCC
AACCTGAACAACGACTCGGGCTTGCCGAAGACAGAGTGAGTGCGCGTGTG
AAGTGTGAAGTGAAGTTGACTCTCCACAGAACTCGCGGCCCTATGAGTGG
TCGTGGGGAGAGAATGGTTCCAGCCATCGAAACCTATGGATTGAGGTGGT
GTATGTCTTGGAAATGTTGGTTCCTCTCACCCCTACCGCAGGATTCAATT
GACAGCATAAGCACACACACACGCACACACACCAGGCCCGCACGGCTTCC
CTCGCAAACTACGATGCCCGTTCCGATGTATTATTGTACGTTTAGAGTGT
CTTCTCTGGAGCAAAGAAAAATAAATTATGCTTTGATTTCCACCCGCCTC
TACTCCGCTCTCAAAAACACCAAGAGCGCCCACGAGTAAATGTGAATATG
CGCGCACAGATACACACTGGTAGGTGCCCGAGGAGTTAGCTTCGGTGTGC
CTAGCAGCATTCGTATCTCTTCGCGAACAAAATATAAACTACTGGCACGC
TATATGGTACATGGGAACTCAATAGTAACAGGTATATGTGTAGTGTATTA
GGCTACGCGAGGCAACGAAAGAGTGACTAAATACCAATGACGGTTACCGC
AGGTTATGCTTACAATAAAAAAATCAATAACGCGTTTCAAGACAAGTAGG
TTCTCATGTTACGAAGGCTATTGATGTGTTCATGTATTTCTGAGCTTGTG
TTTGTTTGTTGCCAATGCGCCCCAGCGACACCTTCTCGCATCCACTCTCA
TATCCGAGTGCAGCAGCAGCAGCAGTCGTACACATTTCTTCACACAACAG
CGTCGCCGGCTTTTATGACTTTTCAAAAATCCCGATGAAGTAATAGATAG
TAGGCTCTTTTTTCTTTTTTCGGCCAGTGCTTGCCACTTGGCAGTGCACG
GTTGGCGACGCGGAAATAACCTGCGTCGTATGTAGTTACCTACACCTTTC
CCTCTGGGTCCTCCTCGAGAGTGCAGCTGAAAGAATGAGCGAAATCGATG
CTCTTGCCACGGACGGAGTACGGTGATTTGTTTCACAGTTCGCAGGGGCC
CCGGGGCAGGAGAGACCCCCCCCCCCAACCTCAAGCTCCCCGCCCTCTTT
CCCGGAAGGCGCTATGTACGGAGACCCCTTTGCAACCCGGGTGCAAGGGG
CTGCACTCAGCGCAACAGCCTATGTATTAAGGGGCTCATGTTCTGCACCC
CAGACGAAGCAAACCACAGGGTGCGATCTACTGCTCAAGCTTTGTAGCGC
GTTGGTGCGGAATTTAGACCCTGAATCGCCCTGTGAGCGTCACAAGCCAG
AGAACTATTTTTTTATGCCTTCCAACACACTTTGAAAGCCTTGGCCATTC
CAGCAGAGAGCGCAGAAGCTGTAGTTAGGTGTCCAGCACGACCGTTTCAG
ATGTTGAGAGGGTGTTCTGCACACCTGGGGCTCCTCGACGTGACGCGTGA
GTCTCCCCGTGGATTTCACCCTTTTAGTACTGGAAGCCCGTTTGGAGAAA
AATATGGTGACACCTAGAATTTGCCCACTGTTCTCGACCTAGACTTGCAA
TGATGGTAGTCTTTGGAACCCATAAAACGGCCTGGGGGCACCCCGCCGAG
GGGTATGGACACCTACCTGCCCTACTTCCCTGTACACAGCTCCACAACAG
GTGCTGGAGACACAACTGAGTTGTCGCGGGTATCTAAAAATCTCGGGAAC
AAAATCGCCTCGATTTGTACCATCCGCGGCACCCCCGGCGGTTCAGCCGT
TTGAGCCGCACAGCACACACACCGCTCTGCTGTCACTCTTGAGAATCACC
GTCTGCTGAGCTTCGAGCGGGTTGCGTGGCCCGCCATGCTCTATTGTGTG
TTGTGAGGGCTGCTTCGTGTGTTTACACACGAAGCAGCTCAGGGTTCACG
TCATGCCTCTACAGCAGAGAAATCTGTATTGTCTAGTACGCTAATACAGT
TTGTACTGCGTTTCAGTATACTTTTTTTCTCCAAATGATGTCGGGGCTTC
GCAGCTGCAAAATGGAGAGACTGTTGTTTCTCGGCCAATCAGTGGGCACC
CAGAAGGCGCGAAAACGTTTCGGCGATAATTTTGTTTTTCAGAGGGCTGG
CGTACTGAAAGCGTTAAGAACAATGATAGCGTGTGCGCCTATGTACAATA
ACAAAGCGTGCGATGAACATACATACTTACATACAGTACATTTTTATGTG
TCACACACACACAGGGAGAAACCGAAGATCGAGAAGCTCCAGGAGATCTT
GGGCGGTCCCGACCCCGCGGACGACGATGGGTGGGCGGACGTGGTGGAGA
AGAAGAGCGTCGTGGCAACCGGAGGCAAGCAGGTGTCCGACCTCATGTGA
GTTTGCAGTGCGTGTCGGTGTCGATGCCGATGTCGATGTCGTGTCCCGTC
GTAAGTGTGTATTTATGTGTCACACGTGTTTCGTGGCCCATGTGGCGGTG
TGGCTTACATGTTTTTCTTGGGCTTTGGTTGTGGTTTTAGTTTTGGTTTT
GGTTTTGGTTCGTGCTGGTGTCTGTTTCTTTCTCTTGAGTGTGTGTTGGT
TGGGGTTCAGGTTCGAGGGCTTTTGAGGCGCCTCCCGTTGGCGCTTCAGA
AGCCGAAAATCAAACCATTAGATGGACCCCTTAACTCGGCGCTGACTGGC
CGGGCTAATTGTTTTTATTTCGGCTGATAAAGGCGCCCATTGGAAAGTGT
GTGCCACTTGGTATGTAGTTGAGATTTTTATGTAGCTCAACAATTCTGTG
GCTGCCGTGTGCAGCAAGCACTGCTCGCTCCGATGGTAGTGTGTCGTGGC
ATCACTTCTGTGTGGATCGAAGCACCTGATTTGCCTCTTCTTGTACATAC
CGCTCGGTATGCGTGCGTGACACGTGGTTTGTTTTTTATTTTATTTTTTT
GCGTTTTTTGGTTGGCTGGGTGCGACGCGAGCATTCTCTTTCTGTTGGCG
TGCCTCGCGCCTTTTTTCATCTTGAATATGGATACACCCACCTTCCTTTT
GGTCGAATTAGTACACATGGACAGAGGAAGGTGCACGACTATACTGATTG
GAGAGATCGAAGCGGTTGCAATGTGATGACAACAACAGCATGTTTGTCGA
ACCCTTCACACCGCCTATGTTTTGGTTTTGGTTTTGGTTTTGATCCCACT
CGCTCTTTGACCTGCTTTTTTCTGCCCGCCGCGCGCGAAAAACCCGGACC
CGGGCATCAGCAACATGACGGCTCTGATGACGGAGGATGAGTCGACAGCC
GTCAAGCTCGAGAAGCAGGACATCAAGTGAGGACAGACAGACAGATAAAA
ATACCGCGTTGACGACTTCCAAGTGAATGTGTTTGTGTTGTGCGGCGGCA
GCCTGGAGCTTTGACTCTGGTCGATCGATCTTGTTTTGATTTGGCTTGTT
TCCGCGATATTTATGTACATACATGTGCTGTGCCGCGCGTGAAGAAGCAG
TGATTTTTCTCGTCGGCGTTAAGAGTAAATTATGCCTTCTGTGTCCCATC
TATATATCTCAATTTTGAAAAATCCTCCTACGATACACATGCCGCATGCT
TTCGTGAGCATTTGCTTCTTTCACCACATATAAAGAAGCGTGTGTTTCCT
CTCATATTTAGGCGTGTGTAGAGTGAACGCCTCCTGCGTTGAATATATCT
GGGAAATTTCGACGGGTCCCCCCCCCCCCCCCCCCCGCCGCCTTTTTTTG
CCCCGCTTTACCCCCCCCAGGGCCCCCCCCCCCCCCCTTGACCCCCCCAA
TAGGGCTGGGCTCGNNNNNNNNNNTTCCCCTCATTTTTGGGGGTGTGAAG
AGGGACCCCCCCCCGCGTTGAATTTATTGGGGAATTTTCGCCGGGCCCCC
CCCCCCCCCCGTGTCTGCTTGTTTTTGCTCGGCTTACACGGCACAAGTGC
CTCTCCGCTCCACTTTGCACGTACAATTATGTATGGTATGTATTTATTTT
GTGCATTCATGGACAACCCGTGGCTACACGTCATAGACCGTGAAACAAGA
CAACAGGAGGGGGGGGGGGTTGGTTGAGAGGCTTGCCGCTCGTCCAGCCT
CTCGATGCCCAAAGTTAGGGTACACTGATCCTTCTGTAGCGCCACGCCAA
AGGGCGTGCGAGCGAGACTTCTGCTGAAGCACGTGACTCCGAACCATCTC
CCGCACATGGAAAGCCTAAGCCTCCCACCAACCAACCAACCAAAACCAAC
CCGTCGTCTCACCTGCCGCTACATACATACCCCTACAACTCGACGCGCAC
GCGCACACCCACACCCTTGCGCATCTACGGTGCCCCCGTCCTTCTTGTCC
CCCCCTCCCTGCAGGCAAGCCTTCCACGACGCCAGAACTGTGAAGGAGGC
CGAGAAGAAGGAGGACGCGCCGGAGCCGGAGAAGAAGGAAGAGGCGAAGG
TGGAGGAGGCGCCCAAATCAAAGGGGCTGTCGGGGGACATCTTCGGGGGC
GGGGCGGCGCGGAGCGGCGGGGGCGGGCTGGGCGGGGGATGGAAGAAGCG
CATGGAGGAGCGCGAGCTGAAGCAGCGGCAGGAGGAGCTCAGCGTGGAGA
ACACGTCGGCGTTCCCGTCGCTCAAGGACGCCATGAGCGCGTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig831:14247..18990+

>mRNA_L-elsbetiae_contig831.17313.1 ID=mRNA_L-elsbetiae_contig831.17313.1|Name=mRNA_L-elsbetiae_contig831.17313.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1326bp|location=Sequence derived from alignment at L-elsbetiae_contig831:14247..18990+ (Laminarionema elsbetiae ELsaHSoW15)
TACGCACTACACGGGCGATCATCGTGCGGCATCGATATCTCTTCTCCTTG
TCTCTCACAGCAGGGGATCATGACGTCCGAGGCACCTCCTCCTGCCGCGG
GCATTTCCTCACTTTTCAAAAAGAAGAGGGGCAAGAAAACCAAAGGCTCC
AACCTGAACAACGACTCGGGCTTGCCGAAGACAGATACGCACTACACGGG
CGATCATCGTGCGGCATCGATATCTCTTCTCCTTGTCTCTCACAGCAGGG
GATCATGACGTCCGAGGCACCTCCTCCTGCCGCGGGCATTTCCTCACTTT
TCAAAAAGAAGAGGGGCAAGAAAACCAAAGGCTCCAACCTGAACAACGAC
TCGGGCTTGCCGAAGACAGAGGAGAAACCGAAGATCGAGAAGCTCCAGGA
GATCTTGGGCGGTCCCGACCCCGCGGACGACGATGGGTGGGCGGACGTGG
TGGAGAAGAAGAGCGTCGTGGCAACCGGAGGCAAGCAGGTGTCCGACCTC
ATGGAGAAACCGAAGATCGAGAAGCTCCAGGAGATCTTGGGCGGTCCCGA
CCCCGCGGACGACGATGGGTGGGCGGACGTGGTGGAGAAGAAGAGCGTCG
TGGCAACCGGAGGCAAGCAGGTGTCCGACCTCATCAACATGACGGCTCTG
ATGACGGAGGATGAGTCGACAGCCGTCAAGCTCGAGAAGCAGGACATCAA
CAACATGACGGCTCTGATGACGGAGGATGAGTCGACAGCCGTCAAGCTCG
AGAAGCAGGACATCAAGCAAGCCTTCCACGACGCCAGAACTGTGAAGGAG
GCCGAGAAGAAGGAGGACGCGCCGGAGCCGGAGAAGAAGGAAGAGGCGAA
GGTGGAGGAGGCGCCCAAATCAAAGGGGCTGTCGGGGGACATCTTCGGGG
GCGGGGCGGCGCGGAGCGGCGGGGGCGGGCTGGGCGGGGGATGGAAGAAG
CGCATGGAGGAGCGCGAGCTGAAGCAGCGGCAGGAGGAGCTCAGCGTGGA
GAACACGTCGGCGTTCCCGTCGCTCAAGGACGCCATGAGCGCGTGAGCAA
GCCTTCCACGACGCCAGAACTGTGAAGGAGGCCGAGAAGAAGGAGGACGC
GCCGGAGCCGGAGAAGAAGGAAGAGGCGAAGGTGGAGGAGGCGCCCAAAT
CAAAGGGGCTGTCGGGGGACATCTTCGGGGGCGGGGCGGCGCGGAGCGGC
GGGGGCGGGCTGGGCGGGGGATGGAAGAAGCGCATGGAGGAGCGCGAGCT
GAAGCAGCGGCAGGAGGAGCTCAGCGTGGAGAACACGTCGGCGTTCCCGT
CGCTCAAGGACGCCATGAGCGCGTGA
back to top