mRNA_L-elsbetiae_contig8308.17311.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8308.17311.1
Unique NamemRNA_L-elsbetiae_contig8308.17311.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8308.17311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8308contigL-elsbetiae_contig8308:167..2128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size983
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8308.17311.1prot_L-elsbetiae_contig8308.17311.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8308 200..1607 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816913.9761906-UTR-L-elsbetiae_contig8308:166..1991622816913.9761906-UTR-L-elsbetiae_contig8308:166..199Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8308 167..199 +
1691683908.2052467-UTR-L-elsbetiae_contig8308:166..1991691683908.2052467-UTR-L-elsbetiae_contig8308:166..199Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8308 167..199 +
1622816914.0144525-UTR-L-elsbetiae_contig8308:1607..21281622816914.0144525-UTR-L-elsbetiae_contig8308:1607..2128Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8308 1608..2128 +
1691683908.239339-UTR-L-elsbetiae_contig8308:1607..21281691683908.239339-UTR-L-elsbetiae_contig8308:1607..2128Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8308 1608..2128 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816913.9878695-CDS-L-elsbetiae_contig8308:199..3521622816913.9878695-CDS-L-elsbetiae_contig8308:199..352Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8308 200..352 +
1691683908.2181964-CDS-L-elsbetiae_contig8308:199..3521691683908.2181964-CDS-L-elsbetiae_contig8308:199..352Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8308 200..352 +
1622816914.0027432-CDS-L-elsbetiae_contig8308:1331..16071622816914.0027432-CDS-L-elsbetiae_contig8308:1331..1607Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8308 1332..1607 +
1691683908.2280374-CDS-L-elsbetiae_contig8308:1331..16071691683908.2280374-CDS-L-elsbetiae_contig8308:1331..1607Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8308 1332..1607 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8308.17311.1

>prot_L-elsbetiae_contig8308.17311.1 ID=prot_L-elsbetiae_contig8308.17311.1|Name=mRNA_L-elsbetiae_contig8308.17311.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp
MDWRNLRVAPNNAISPDLLYDGRLGLARARRAWREGGNGWRRTDGAGPIR
HRPFRALPPCHPPDPYCYPRQNQAQNRRSPAATRPAQPPPLAPTTPVARK
TGDDPAAYVVARVVGPPSATPLPHAYGVRVSDQELSRPSYDA*
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mRNA from alignment at L-elsbetiae_contig8308:167..2128+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8308.17311.1 ID=mRNA_L-elsbetiae_contig8308.17311.1|Name=mRNA_L-elsbetiae_contig8308.17311.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1962bp|location=Sequence derived from alignment at L-elsbetiae_contig8308:167..2128+ (Laminarionema elsbetiae ELsaHSoW15)
GTGTTGTGCGTGTGCTTCTCCGCGTGCGGGTACATGGACTGGCGGAACCT
GCGGGTAGCGCCGAACAACGCAATCTCTCCGGATCTCCTCTACGATGGTA
GGCTTGGGTTGGCCCGGGCTCGGCGAGCGTGGAGGGAGGGCGGAAATGGC
TGGAGGAGGACTGACGGCGCCGGCCCCATCCGACACGTTCCAACACCAGG
TAGGGTTGGAGCCCGGCTTATCGTTTCCTTCTAATACTTCAGGGCCTCTG
CGTGTTTGTCGTGCGTTCAGCATAATAATCAGTACACGCACGTGTTCCCC
AAAGTTCGCATAGGCTGAGAAGGTTTGTTCGTTGTCGGTTCGCGGGGCAA
GATTTAATACTTCGAAGTAAAAAGTCGTACTCGTCGTAGTGCTCTCGATG
GAAATGATGCCGTGTTATCTCCGACTGTACCATGTCTCTTCCTTTCACTC
TTTATTTTGTCGGGGGCGAGCCCCGCCTCCGTACTATGTACGCCATTGAG
TGGGTAGCTCATGTTATTGTACACAGGATATTCTGGTGGACTTGCGTGCA
CCTGTGACCGCGTATTCTGTTCGTTTTACGGAAGCGCGTTTCTTACACTG
TTGCCCTTTTTTAGCGTCATTCCTTGTTTTCCCCCGTATGTATAGTCTAC
ACCTTTGTGCGGCTTGCGAATATCTCACGGTGCTTGGTGCCTGGGGTAAA
GCTAGCCTACCGTAGGTTACGCAAGATACCACACCCCCTGGACATATTTT
CAAAGCTCGATCCCTCCCCAGGAAGGAGAGTGTCAGTGCCGAAAGGGGTG
ACGTCGGAAAGATCTAGTCGACAGCTGTACGAAAATGTGATGTTTGGTGC
TGGCACCCTCTTCGTTACGGACGGACAAAAGGGGCTCTAAAAAATGGTCC
AGGGGGTGGGCTATCTTGTGCCACCTACGGTAGTCGACGAATCACAAGGC
GCTCCGAATCGAAGATTATGTGAAAAGTCTTGCATGGTGTTTGTTACTGT
GTGTTTTCGCAACTTTCTGCTCCCATAAAAAATGGTGTCAGTGCAACTCG
ACCTCCCTCCGCGCGCATGCCCCTGGAGCCTCTACGTGTACATCATAGTT
GCAGCACTTACGGTACAACCATCTTTGGACCTGGTCGTCCGTCGTTACTC
CCATGTAACCGCCAGCGCCCTTTCCGGGCTTTGCCGCCATGTCATCCCCC
CGACCCATATTGTTATCCGCGTCAAAATCAAGCTCAAAATCGAAGGTCAC
CAGCCGCCACACGGCCGGCGCAGCCCCCCCCGCTGGCACCTACAACACCT
GTGGCGAGAAAAACGGGAGATGATCCTGCGGCCTACGTAGTGGCAAGGGT
GGTAGGACCACCATCGGCCACACCGCTGCCGCACGCCTACGGCGTTCGTG
TGTCTGACCAGGAGCTGTCTCGCCCCTCCTATGATGCATGACAGCCGAGA
GTCGGCTATCCTCTGGCCATCCCGAAGACGCCCAGAGGATGCGCTGAACG
TGAAGTAGTAGCGTTTTGCGGCGAATTACTAATATTTATTTTGTAACGAG
CTTTGTCGTAGCGCATTGTAGGAAAGGTAGGTGTGGAACGCTGGTTTGGT
GTTGTGTTCGAGAGCACCCCGCACCCCGACTAACTTACTCTCGATATTCG
TGTCCCTTACCCGCCGGATCATTTCATGTTAAGTATTGGATTTCTTGGGT
GAGGCCTTGTGCGCCCCGGCTGGAGGGCCTCGCCTACGGTTTTGTTCCGA
AACCGACGTTCGTTGGCTGATCGAGATTGTTGTGTTCTTGTCCCGTACTA
CCCGGAGAATTCGATGTAAGTATTGGACGTCTTGGTATGCTGAGTAGATC
CGTGCAGAGTATACGCCCAGTTCGATGAACTTAGTTGGAGAAGGTCGTGG
AAAGCTCGATGTGAGAGCAGACTGATGATGTAAAACCTCCCCGCGAGTGT
GATAACCCGCTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8308:167..2128+

>mRNA_L-elsbetiae_contig8308.17311.1 ID=mRNA_L-elsbetiae_contig8308.17311.1|Name=mRNA_L-elsbetiae_contig8308.17311.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=858bp|location=Sequence derived from alignment at L-elsbetiae_contig8308:167..2128+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACTGGCGGAACCTGCGGGTAGCGCCGAACAACGCAATCTCTCCGGA
TCTCCTCTACGATGGTAGGCTTGGGTTGGCCCGGGCTCGGCGAGCGTGGA
GGGAGGGCGGAAATGGCTGGAGGAGGACTGACGGCGCCGGCCCCATCCGA
CACATGGACTGGCGGAACCTGCGGGTAGCGCCGAACAACGCAATCTCTCC
GGATCTCCTCTACGATGGTAGGCTTGGGTTGGCCCGGGCTCGGCGAGCGT
GGAGGGAGGGCGGAAATGGCTGGAGGAGGACTGACGGCGCCGGCCCCATC
CGACACCGCCCTTTCCGGGCTTTGCCGCCATGTCATCCCCCCGACCCATA
TTGTTATCCGCGTCAAAATCAAGCTCAAAATCGAAGGTCACCAGCCGCCA
CACGGCCGGCGCAGCCCCCCCCGCTGGCACCTACAACACCTGTGGCGAGA
AAAACGGGAGATGATCCTGCGGCCTACGTAGTGGCAAGGGTGGTAGGACC
ACCATCGGCCACACCGCTGCCGCACGCCTACGGCGTTCGTGTGTCTGACC
AGGAGCTGTCTCGCCCCTCCTATGATGCATGACGCCCTTTCCGGGCTTTG
CCGCCATGTCATCCCCCCGACCCATATTGTTATCCGCGTCAAAATCAAGC
TCAAAATCGAAGGTCACCAGCCGCCACACGGCCGGCGCAGCCCCCCCCGC
TGGCACCTACAACACCTGTGGCGAGAAAAACGGGAGATGATCCTGCGGCC
TACGTAGTGGCAAGGGTGGTAGGACCACCATCGGCCACACCGCTGCCGCA
CGCCTACGGCGTTCGTGTGTCTGACCAGGAGCTGTCTCGCCCCTCCTATG
ATGCATGA
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