mRNA_L-elsbetiae_contig8307.17310.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8307.17310.1
Unique NamemRNA_L-elsbetiae_contig8307.17310.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8307.17310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8307contigL-elsbetiae_contig8307:6380..7471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue5.1e-07
Seed eggNOG ortholog2880.D7FUL1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glycosyl transferases group 1
EggNOG OGs2CY24@1,2S1EB@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size1093
Cds size1092
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816913.8611925-CDS-L-elsbetiae_contig8307:6379..74711622816913.8611925-CDS-L-elsbetiae_contig8307:6379..7471Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8307 6380..7471 +
1691683908.1349015-CDS-L-elsbetiae_contig8307:6379..74711691683908.1349015-CDS-L-elsbetiae_contig8307:6379..7471Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8307 6380..7471 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8307.17310.1prot_L-elsbetiae_contig8307.17310.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8307 6380..7471 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8307.17310.1

>prot_L-elsbetiae_contig8307.17310.1 ID=prot_L-elsbetiae_contig8307.17310.1|Name=mRNA_L-elsbetiae_contig8307.17310.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=364bp
PLPPPLPAGVEGAAAAGVAAAPQDDPDGGRGGPLIATVSTALTVPVTVPV
TVPVTVIRVTATVSAAGISTKAGGARTNRSAITVASPSSPASCAPAAAAA
AAANGTAAPAPATTAGAAAAGPVSKRASVLPAAEDIETQGPADCRSDRVL
RPTPPPREALTRAPERSLDGESTATGRHRSGSQAEVSAAGGVRSNDGGSR
LDGGADAGGGRSEDTPCLLSPSESASPGLCADAGSSSSSGDAPPRRPPSG
SSAAPPGLSPVLSAGATRPNAPTVLVVYRADFLPPEDWRRSVEVAVVTVP
GGARVTFMEVGEIPSAGGDDAAAAGSERGRGSKGEEGYRRGILEARLSRL
IAAGNIQGDTRAL*
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mRNA from alignment at L-elsbetiae_contig8307:6380..7471+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8307.17310.1 ID=mRNA_L-elsbetiae_contig8307.17310.1|Name=mRNA_L-elsbetiae_contig8307.17310.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1092bp|location=Sequence derived from alignment at L-elsbetiae_contig8307:6380..7471+ (Laminarionema elsbetiae ELsaHSoW15)
CCGCTGCCGCCGCCGTTGCCGGCGGGTGTGGAGGGAGCCGCGGCGGCGGG
CGTGGCGGCAGCGCCCCAAGACGACCCCGACGGCGGTCGGGGGGGCCCGT
TGATAGCGACCGTCTCCACAGCGTTGACAGTCCCGGTGACAGTCCCGGTG
ACAGTCCCGGTGACAGTCATCCGGGTGACAGCGACCGTCTCTGCCGCCGG
CATCTCGACAAAGGCCGGCGGTGCTCGCACCAACCGCTCGGCAATCACCG
TCGCCTCGCCGTCCTCACCGGCGAGTTGTGCCCCGGCGGCGGCGGCGGCG
GCCGCAGCCAACGGCACGGCCGCCCCCGCTCCCGCCACTACGGCCGGGGC
TGCTGCTGCTGGTCCCGTCTCAAAAAGAGCCAGCGTGCTGCCGGCGGCCG
AAGATATCGAAACACAGGGCCCCGCGGACTGCCGTTCGGACCGCGTCCTT
CGACCCACGCCGCCACCGAGGGAAGCCTTGACGAGAGCACCTGAACGAAG
CCTTGACGGCGAGAGCACCGCGACAGGGCGGCATCGCTCAGGCTCACAAG
CAGAAGTCTCGGCAGCGGGGGGGGTGCGCAGCAACGACGGTGGCAGCCGC
CTCGATGGCGGCGCCGATGCGGGCGGAGGCAGGTCGGAGGACACTCCGTG
CTTATTATCCCCCTCAGAGTCGGCATCGCCGGGACTCTGCGCCGACGCGG
GCAGCAGCAGCAGCTCGGGGGACGCTCCGCCGCGAAGACCCCCCTCGGGG
TCGTCGGCGGCACCCCCGGGACTGTCACCGGTACTGTCAGCCGGTGCGAC
GAGGCCGAACGCTCCCACGGTCCTCGTTGTGTACCGGGCTGATTTTCTGC
CCCCGGAGGACTGGAGGAGGAGCGTCGAGGTTGCCGTGGTCACCGTGCCC
GGTGGAGCCCGCGTCACTTTCATGGAGGTAGGCGAGATACCTTCTGCCGG
CGGCGACGACGCTGCTGCGGCGGGCTCCGAGAGGGGGCGCGGGTCGAAGG
GAGAGGAGGGATATCGACGGGGGATTCTTGAGGCGCGCCTCTCCCGACTG
ATAGCTGCAGGAAACATACAAGGTGACACACGCGCATTGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8307:6380..7471+

>mRNA_L-elsbetiae_contig8307.17310.1 ID=mRNA_L-elsbetiae_contig8307.17310.1|Name=mRNA_L-elsbetiae_contig8307.17310.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2184bp|location=Sequence derived from alignment at L-elsbetiae_contig8307:6380..7471+ (Laminarionema elsbetiae ELsaHSoW15)
CCGCTGCCGCCGCCGTTGCCGGCGGGTGTGGAGGGAGCCGCGGCGGCGGG
CGTGGCGGCAGCGCCCCAAGACGACCCCGACGGCGGTCGGGGGGGCCCGT
TGATAGCGACCGTCTCCACAGCGTTGACAGTCCCGGTGACAGTCCCGGTG
ACAGTCCCGGTGACAGTCATCCGGGTGACAGCGACCGTCTCTGCCGCCGG
CATCTCGACAAAGGCCGGCGGTGCTCGCACCAACCGCTCGGCAATCACCG
TCGCCTCGCCGTCCTCACCGGCGAGTTGTGCCCCGGCGGCGGCGGCGGCG
GCCGCAGCCAACGGCACGGCCGCCCCCGCTCCCGCCACTACGGCCGGGGC
TGCTGCTGCTGGTCCCGTCTCAAAAAGAGCCAGCGTGCTGCCGGCGGCCG
AAGATATCGAAACACAGGGCCCCGCGGACTGCCGTTCGGACCGCGTCCTT
CGACCCACGCCGCCACCGAGGGAAGCCTTGACGAGAGCACCTGAACGAAG
CCTTGACGGCGAGAGCACCGCGACAGGGCGGCATCGCTCAGGCTCACAAG
CAGAAGTCTCGGCAGCGGGGGGGGTGCGCAGCAACGACGGTGGCAGCCGC
CTCGATGGCGGCGCCGATGCGGGCGGAGGCAGGTCGGAGGACACTCCGTG
CTTATTATCCCCCTCAGAGTCGGCATCGCCGGGACTCTGCGCCGACGCGG
GCAGCAGCAGCAGCTCGGGGGACGCTCCGCCGCGAAGACCCCCCTCGGGG
TCGTCGGCGGCACCCCCGGGACTGTCACCGGTACTGTCAGCCGGTGCGAC
GAGGCCGAACGCTCCCACGGTCCTCGTTGTGTACCGGGCTGATTTTCTGC
CCCCGGAGGACTGGAGGAGGAGCGTCGAGGTTGCCGTGGTCACCGTGCCC
GGTGGAGCCCGCGTCACTTTCATGGAGGTAGGCGAGATACCTTCTGCCGG
CGGCGACGACGCTGCTGCGGCGGGCTCCGAGAGGGGGCGCGGGTCGAAGG
GAGAGGAGGGATATCGACGGGGGATTCTTGAGGCGCGCCTCTCCCGACTG
ATAGCTGCAGGAAACATACAAGGTGACACACGCGCATTGTGACCGCTGCC
GCCGCCGTTGCCGGCGGGTGTGGAGGGAGCCGCGGCGGCGGGCGTGGCGG
CAGCGCCCCAAGACGACCCCGACGGCGGTCGGGGGGGCCCGTTGATAGCG
ACCGTCTCCACAGCGTTGACAGTCCCGGTGACAGTCCCGGTGACAGTCCC
GGTGACAGTCATCCGGGTGACAGCGACCGTCTCTGCCGCCGGCATCTCGA
CAAAGGCCGGCGGTGCTCGCACCAACCGCTCGGCAATCACCGTCGCCTCG
CCGTCCTCACCGGCGAGTTGTGCCCCGGCGGCGGCGGCGGCGGCCGCAGC
CAACGGCACGGCCGCCCCCGCTCCCGCCACTACGGCCGGGGCTGCTGCTG
CTGGTCCCGTCTCAAAAAGAGCCAGCGTGCTGCCGGCGGCCGAAGATATC
GAAACACAGGGCCCCGCGGACTGCCGTTCGGACCGCGTCCTTCGACCCAC
GCCGCCACCGAGGGAAGCCTTGACGAGAGCACCTGAACGAAGCCTTGACG
GCGAGAGCACCGCGACAGGGCGGCATCGCTCAGGCTCACAAGCAGAAGTC
TCGGCAGCGGGGGGGGTGCGCAGCAACGACGGTGGCAGCCGCCTCGATGG
CGGCGCCGATGCGGGCGGAGGCAGGTCGGAGGACACTCCGTGCTTATTAT
CCCCCTCAGAGTCGGCATCGCCGGGACTCTGCGCCGACGCGGGCAGCAGC
AGCAGCTCGGGGGACGCTCCGCCGCGAAGACCCCCCTCGGGGTCGTCGGC
GGCACCCCCGGGACTGTCACCGGTACTGTCAGCCGGTGCGACGAGGCCGA
ACGCTCCCACGGTCCTCGTTGTGTACCGGGCTGATTTTCTGCCCCCGGAG
GACTGGAGGAGGAGCGTCGAGGTTGCCGTGGTCACCGTGCCCGGTGGAGC
CCGCGTCACTTTCATGGAGGTAGGCGAGATACCTTCTGCCGGCGGCGACG
ACGCTGCTGCGGCGGGCTCCGAGAGGGGGCGCGGGTCGAAGGGAGAGGAG
GGATATCGACGGGGGATTCTTGAGGCGCGCCTCTCCCGACTGATAGCTGC
AGGAAACATACAAGGTGACACACGCGCATTGTGA
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