mRNA_L-elsbetiae_contig83.17305.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig83.17305.1
Unique NamemRNA_L-elsbetiae_contig83.17305.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig83.17305.1 vs. uniprot
Match: D7FS97_ECTSI (Cytochrome b5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS97_ECTSI)

HSP 1 Score: 424 bits (1091), Expect = 7.230e-147
Identity = 217/276 (78.62%), Postives = 230/276 (83.33%), Query Frame = 1
Query:    1 DDERESTAKTKYYTPDDVALHNCTEDCWLSLFGQVVDLTELIIANRGPLADPLIAAAGTDISHWFSLSSLPDGNKSRAGGASDSSKSGAGVSSTKAAKESGGDNSVTGRPDECEKVGDPRTFVDPHTGLTVPYLPMGRFLHVPPNFPTTKWSTNFGLPWWRDPKRVVGK-LTRKARPLRVVNILSRQEDQLLVACENTIADIQERYLEYNAHAASYTWKVLREEASSSKFVPANMDQTLEENGIVDDDLAFEKLGIDDDGYMPVLHIYFNDDLTIA 825
            D +  S+ K ++YTPDDVALHNC EDCWLSLFGQV+DLTELI+ANRGPLADPLIAAAGTD+SHWF L   PD  K +  G   S KS     STK  KE    N   GR +ECE   DPRTFVDP TGLT PYLPMGRFLHVPPNFPTTKWST+FGLPWWRD KRVVGK LTRKARPLRVVNILSRQEDQLLVACE+TIADIQERYLEYNAHAASYTWKVL++E    KFVPA MDQTLEENGIVDDDLAFEKLGIDDDGYMPVLHIYFNDDLTIA
Sbjct:    9 DQDDSSSPKARFYTPDDVALHNCAEDCWLSLFGQVLDLTELILANRGPLADPLIAAAGTDVSHWFHLPPPPDVKKPKPRGIGGSDKSSNKALSTKIVKEGDDGN---GRLEECENASDPRTFVDPQTGLTTPYLPMGRFLHVPPNFPTTKWSTSFGLPWWRDRKRVVGKKLTRKARPLRVVNILSRQEDQLLVACEDTIADIQERYLEYNAHAASYTWKVLQDE----KFVPAKMDQTLEENGIVDDDLAFEKLGIDDDGYMPVLHIYFNDDLTIA 277          
BLAST of mRNA_L-elsbetiae_contig83.17305.1 vs. uniprot
Match: A0A6H5KWF6_9PHAE (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWF6_9PHAE)

HSP 1 Score: 317 bits (811), Expect = 1.730e-104
Identity = 179/278 (64.39%), Postives = 199/278 (71.58%), Query Frame = 1
Query:    1 DDERESTAKTKYYTPDDVALHNCTEDCWLSLFGQVVDLTELIIANRGPLADPLIAAAGTDISHWFSLSSLPDGNKSRAGGASDSSKSGAGVSSTKAAKESGGDNSVTGRPDECEKVGDPRTFVDPHTGLTVPYLPMG-RFLHVPPNFPTTKWS-TNFGLPWWRDPKRVVGKLTRKARPLRVVNILSRQEDQLLVACENTIADIQ-ERYLEYNAHAASYTWKVLREEASSSKFVPANMDQTLEENGIVDDDLAFEKLGIDDDGYMPVLHIYFNDDLTIA 825
            D +  S+ K ++YTPDDVALHNC EDCWLSLFGQV+DLTELI+ANRGPLADPLIAAAGTD+SHWF L   PD  KS+  G     +S     STK  KE G  N   GR +ECE   +PRTFVDP TGLT PYLPMG +   +PPN  T   S T   LP        + KLTRKARPLRVVNILSRQEDQLLVACE+TIADIQ ER+L   A++     +         KFVPA MDQTLEENGIVDDDLAFEKLGIDDDGYMP+LHIYFNDDLTIA
Sbjct:    9 DQDDSSSQKARFYTPDDVALHNCAEDCWLSLFGQVLDLTELILANRGPLADPLIAAAGTDVSHWFHLPPPPDVKKSKPRGIGGGDRSNNKALSTKTVKEGGDGN---GRLEECENASEPRTFVDPQTGLTTPYLPMGSQPTRIPPNLGTACDSLTTVTLP------HRIEKLTRKARPLRVVNILSRQEDQLLVACEDTIADIQDERFLGVGANSVLLHLQ---------KFVPAKMDQTLEENGIVDDDLAFEKLGIDDDGYMPILHIYFNDDLTIA 268          
BLAST of mRNA_L-elsbetiae_contig83.17305.1 vs. uniprot
Match: A0A836C925_9STRA (Cytochrome b5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C925_9STRA)

HSP 1 Score: 288 bits (736), Expect = 1.090e-93
Identity = 142/270 (52.59%), Postives = 177/270 (65.56%), Query Frame = 1
Query:   16 STAKTKYYTPDDVALHNCTEDCWLSLFGQVVDLTELIIANRGPLADPLIAAAGTDISHWFSLSSLPDGNKSRAGGASDSSKSGAGVSSTKAAKESGGDNSVTGRPDECEKVGDPRTFVDPHTGLTVPYLPMGRFLHVPPNFPTTKWSTNFGLPWWRDPKRVVGKLTRKARPLRVVNILSRQEDQLLVACENTIADIQERYLEYNAHAASYTWKVLREEASSSKFVPANMDQTLEENGIVDDDLAFEKLGIDDDGYMPVLHIYFNDDLTIA 825
            + A  +Y+TP+DVA HNC EDCW+S   +V+DLT LI  +RGPLA+P+IAAAG+DISHWF+                                                K GDP+T +DP TGLTV Y P GRF+HVPPNFPTT W T+FG PWW+D + VVG LT +AR +R+VN+L++QED+LLV+CE+T+A IQ RY E NAHA SYTWK L   +  +KFVP +M++TLEENG+VDD  AF KLG D D   PVLHIYFNDDLT+A
Sbjct:    8 AAAVLRYFTPEDVAQHNCAEDCWVSAGHRVLDLTALIEEHRGPLAEPIIAAAGSDISHWFN-----------------------------------------------PKTGDPKTCIDPVTGLTVAYTPSGRFIHVPPNFPTTAWRTDFGAPWWQDARYVVGTLTARARMVRIVNVLTQQEDELLVSCEDTVASIQRRYEERNAHAGSYTWKALSSGSQDAKFVPMDMEKTLEENGVVDDSDAFGKLGADADCSAPVLHIYFNDDLTVA 230          
BLAST of mRNA_L-elsbetiae_contig83.17305.1 vs. uniprot
Match: A0A7S2F938_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2F938_9STRA)

HSP 1 Score: 248 bits (633), Expect = 2.750e-78
Identity = 124/266 (46.62%), Postives = 160/266 (60.15%), Query Frame = 1
Query:   22 AKTKYYTPDDVALHNCTEDCWLSLFGQVVDLTELIIANRGPLADPLIAAAGTDISHWFSLSSLPDGNKSRAGGASDSSKSGAGVSSTKAAKESGGDNSVTGRPDECEKVGDPRTFVDPHTGLTVPYLPMGRFLHVPPNFPTTKWSTNFGLPWWRDPKRVVGKLTRKARPLRVVNILSRQEDQLLVACENTIADIQERYLEYNAHAASYTWKVLREEASSSKFVPANMDQTLEENGIVDDDLAFEKLGIDDDGYMPVLHIYFNDDLT 819
            AK ++YTP+D+A HNC +D W+S+  +V DLTELI ANRGPLA PLI  AG DISHWF                                                 K G  +TF+DP  G+ VPY P GRFLHVPP  PT  W+T+FG  WW D   ++G+LT K R +++VN+L+ Q D L V  E T+ +I++RY+EYN HA SYTWK L E+A    FVP +M++TL+ENG+ D+   F+KLGID D Y PV+H+YFNDDLT
Sbjct:    2 AKRRFYTPEDLAAHNCAKDIWVSINYKVFDLTELIQANRGPLAQPLIEVAGQDISHWFD-----------------------------------------------SKTGGVKTFMDPSRGVRVPYTPHGRFLHVPPPEPTAAWNTDFGTAWWLDEDLIIGRLTEKTRKVQIVNVLTHQTDLLTVCSEETLEEIRDRYMEYNKHAQSYTWKKLEEDA----FVPMDMEKTLDENGVPDESEEFDKLGIDFDYYYPVIHVYFNDDLT 216          
BLAST of mRNA_L-elsbetiae_contig83.17305.1 vs. uniprot
Match: A0A7S2C328_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C328_9STRA)

HSP 1 Score: 239 bits (609), Expect = 1.550e-74
Identity = 117/268 (43.66%), Postives = 163/268 (60.82%), Query Frame = 1
Query:   22 AKTKYYTPDDVALHNCTEDCWLSLFGQVVDLTELIIANRGPLADPLIAAAGTDISHWFSLSSLPDGNKSRAGGASDSSKSGAGVSSTKAAKESGGDNSVTGRPDECEKVGDPRTFVDPHTGLTVPYLPMGRFLHVPPNFPTTKWSTNFGLPWWRDPKRVVGKLTRKARPLRVVNILSRQEDQLLVACENTIADIQERYLEYNAHAASYTWKVLREEASSSKFVPANMDQTLEENGIVDDDLAFEKLGIDDDGYMPVLHIYFNDDLTIA 825
            ++ +YYTP DVA HN   DC +S+F +V DLT+LI  N+GPLA PL+  AG DISHWF                                         T  P +C      +T++DP  G+T+PY P GRF+ VPP+ PT  WST+FG+PWW++   +VG+L+ K R + +VN+L++Q+D L V  E T+ +I++RY+EYN HA SYTWK L E     KFV  NM +TL+ENG++D+   FE+L ID+D Y P++H+YF D+LTIA
Sbjct:   11 SRRRYYTPGDVAAHNSATDCLVSIFHRVFDLTDLIRDNQGPLAQPLVEVAGQDISHWF-----------------------------------------TNNPVQC------KTYIDPDRGMTLPYTPHGRFIDVPPSEPTASWSTSFGIPWWQNEDIIVGRLSEKTRKIMIVNVLTQQKDVLEVCSEETMLEIRDRYMEYNKHAESYTWKKLHE----GKFVVMNMQKTLDENGVIDESDDFEELEIDEDFYYPIIHVYFEDNLTIA 227          
BLAST of mRNA_L-elsbetiae_contig83.17305.1 vs. uniprot
Match: A0A7S2WHL5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WHL5_9STRA)

HSP 1 Score: 235 bits (600), Expect = 6.750e-73
Identity = 118/271 (43.54%), Postives = 161/271 (59.41%), Query Frame = 1
Query:   13 ESTAKTKYYTPDDVALHNCTEDCWLSLFGQVVDLTELIIANRGPLADPLIAAAGTDISHWFSLSSLPDGNKSRAGGASDSSKSGAGVSSTKAAKESGGDNSVTGRPDECEKVGDPRTFVDPHTGLTVPYLPMGRFLHVPPNFPTTKWSTNFGLPWWRDPKRVVGKLTRKARPLRVVNILSRQEDQLLVACENTIADIQERYLEYNAHAASYTWKVLREEASSSKFVPANMDQTLEENGIVDDDLAFEKLGIDDDGYMPVLHIYFNDDLTIA 825
            +S    +YYTP++VA HN   D W+S+F +V++LT+L+  +RG L  PLI AAG DISHWF                                                EK G+ +T +DP  G+ +PY P GRFLHV P  PT  WST    PWW+D   V+GKLT+K R +++VN++S+Q D L V  E TI++I++RY+EYN HA+SYTWK L    +   FV  +M++TL ENG+VD+   FE+LGI+DD Y P+LH+YFNDDLT+A
Sbjct:   28 DSMETRRYYTPEEVAAHNSAGDLWVSVFHRVLNLTDLVREHRGELTVPLIEAAGQDISHWFD-----------------------------------------------EKTGNVKTRIDPGKGIRLPYTPQGRFLHVAPAEPTANWSTKIANPWWQDENLVIGKLTQKTRKVQIVNVISQQTDLLTVCSEETISEIRDRYMEYNRHASSYTWKKL----AQGTFVLLDMEKTLAENGVVDESEEFEELGIEDDFYYPILHVYFNDDLTVA 247          
BLAST of mRNA_L-elsbetiae_contig83.17305.1 vs. uniprot
Match: K3WC11_GLOUD (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WC11_GLOUD)

HSP 1 Score: 230 bits (586), Expect = 5.010e-71
Identity = 124/272 (45.59%), Postives = 156/272 (57.35%), Query Frame = 1
Query:   10 RESTAKTKYYTPDDVALHNCTEDCWLSLFGQVVDLTELIIANRGPLADPLIAAAGTDISHWFSLSSLPDGNKSRAGGASDSSKSGAGVSSTKAAKESGGDNSVTGRPDECEKVGDPRTFVDPHTGLTVPYLPMGRFLHVPPNFPTTKWSTNFGLPWWRDPKRVVGKLTRKARPLRVVNILSRQEDQLLVACENTIADIQERYLEYNAHAASYTWKVLREEASSSKFVPANMDQTLEENGIVDDDLAFEKLGIDDDGYMPVLHIYFNDDLTIA 825
            +E   K +YYTP +VA  N   DCW+S+  +V+DL+ELI+ NRG L  PL+  AG DISHWF                                              E E +   +  VDP   ++ P+LP GRFLHV P  P   W T+  LPWW+DPK  VGKLTRKAR + VVN+L++Q   L V CE TI DIQ RYLE N+HAASYTWK L ++    +FVP  M+ TLEENGI D+ L FE L +D+  Y P+LH+YFNDDLT+A
Sbjct:   10 QEHDHKLRYYTPHEVAARNQAHDCWVSINHRVLDLSELIMDNRGILTQPLVLHAGEDISHWFDP--------------------------------------------ETEDI---KYHVDPERNISFPFLPYGRFLHVAPLEPLGDWKTSDFLPWWKDPKYTVGKLTRKARWIEVVNVLTQQRHSLQVCCEETIHDIQTRYLEMNSHAASYTWKYLDDD----EFVPLKMNCTLEENGIPDESLMFEHLDMDEHQYKPILHLYFNDDLTVA 230          
BLAST of mRNA_L-elsbetiae_contig83.17305.1 vs. uniprot
Match: A0A8K1CLP1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CLP1_PYTOL)

HSP 1 Score: 229 bits (584), Expect = 1.380e-70
Identity = 122/269 (45.35%), Postives = 155/269 (57.62%), Query Frame = 1
Query:   19 TAKTKYYTPDDVALHNCTEDCWLSLFGQVVDLTELIIANRGPLADPLIAAAGTDISHWFSLSSLPDGNKSRAGGASDSSKSGAGVSSTKAAKESGGDNSVTGRPDECEKVGDPRTFVDPHTGLTVPYLPMGRFLHVPPNFPTTKWSTNFGLPWWRDPKRVVGKLTRKARPLRVVNILSRQEDQLLVACENTIADIQERYLEYNAHAASYTWKVLREEASSSKFVPANMDQTLEENGIVDDDLAFEKLGIDDDGYMPVLHIYFNDDLTIA 825
            T   +YYTP +VA+HN  EDCW+S+F +++DL+ELI  +RG L  PLI  AG DISHWF  ++                                                D R  VD    + +P+LP GRFL+VPP  PT+ WST   +PWW+D K VVGKLT K R + +VN+L++Q   L V CE TI +IQ RYL +NAHA SYTWK L ++     FVP NM QTLEENGI D+   FEKL +D+  Y P L+IYFNDDLT+A
Sbjct:   23 TRALRYYTPREVAMHNTGEDCWVSIFHRILDLSELIQEHRGLLTQPLILHAGEDISHWFDPATQ-----------------------------------------------DVRKHVDAGRNVELPFLPYGRFLNVPPPEPTSNWSTTDAVPWWKDAKYVVGKLTTKVRWIEIVNVLTQQHHALEVCCEETIEEIQARYLRFNAHARSYTWKYLDDD----DFVPLNMKQTLEENGIPDESPLFEKLDMDEQQYKPSLYIYFNDDLTVA 240          
BLAST of mRNA_L-elsbetiae_contig83.17305.1 vs. uniprot
Match: A0A7S1TZ39_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZ39_9STRA)

HSP 1 Score: 228 bits (582), Expect = 4.470e-70
Identity = 122/297 (41.08%), Postives = 161/297 (54.21%), Query Frame = 1
Query:   25 KTKYYTPDDVALHNCTEDCWLSLFGQVVDLTELIIANRGPLADPLIAAAGTDISHWFSLSSLPDGNKSRAGGASDSSKSGAGVSSTKAAKESGGDNSVTGRPDECEKVGDPRTFVDPHTGLTVPYLPMGRFLHVPPNFPTTKWSTNFGLPWWRDPKRVVGKLTRKARPLRVVNILSRQEDQLLVACENTIADIQERYLEYNAHAASYTWKVLREEASSSKFVPANMDQTLEENGIVDDDLAFEKLGIDDDG------------------------------YMPVLHIYFNDDLTIA 825
            + +YYTP+++ALHNC EDCW+S+FG+V DLTE I ANRGPLA P+I  +G D+SHWF                                                EK    R  +DP T L +PYLPMGRFLHVPP FP++ W T+FG PWW+D    +G L++K R +R++N L+RQ D+L+V  E TI +IQ+R L YNAHAASYTWK LRE     KF   +M +TL ENG++D+   F+ L    +G                              Y+P L +Y+NDDLT+A
Sbjct:   10 RRRYYTPEEMALHNCAEDCWVSVFGKVYDLTEFIAANRGPLAQPIILMSGKDVSHWFD-----------------------------------------------EKTKYVRMHIDPETNLRLPYLPMGRFLHVPPAFPSSAWRTDFGTPWWQDADLCIGALSQKTRVVRIINALTRQADELIVPTEETIDEIQDRCLSYNAHAASYTWKSLRE----GKFEVLDMAKTLAENGVIDELDNFKMLDPKPEGFPPEETDLTESEKRIVEEANRYDESDIHAEYIPELVLYYNDDLTVA 255          
BLAST of mRNA_L-elsbetiae_contig83.17305.1 vs. uniprot
Match: F0VIR4_NEOCL (Cytochrome b5 domain-containing protein 1 n=1 Tax=Neospora caninum (strain Liverpool) TaxID=572307 RepID=F0VIR4_NEOCL)

HSP 1 Score: 227 bits (579), Expect = 6.890e-70
Identity = 115/268 (42.91%), Postives = 156/268 (58.21%), Query Frame = 1
Query:   22 AKTKYYTPDDVALHNCTEDCWLSLFGQVVDLTELIIANRGPLADPLIAAAGTDISHWFSLSSLPDGNKSRAGGASDSSKSGAGVSSTKAAKESGGDNSVTGRPDECEKVGDPRTFVDPHTGLTVPYLPMGRFLHVPPNFPTTKWSTNFGLPWWRDPKRVVGKLTRKARPLRVVNILSRQEDQLLVACENTIADIQERYLEYNAHAASYTWKVLREEASSSKFVPANMDQTLEENGIVDDDLAFEKLGIDDDGYMPVLHIYFNDDLTIA 825
            A+ +YYT  D+A H+   DCW++LFG+V+DLT L++ ++  LA PLIAAAGTDIS WF                                                EK  +P   +DP TG+  PY P GRF+H+PP +P+  W+T  G PWW D K V+G+LT+K R +R++N+L + E  L V CE+TI +IQ RYL  N HA SYTWK L +        P NM+QTLEENGI D+++   +LGI+ D ++P LH+YFNDDLT+A
Sbjct:   24 ARCRYYTLADLASHSSHYDCWVALFGRVLDLTPLLVKHQNELALPLIAAAGTDISDWFD-----------------------------------------------EKTRNPTRHIDPETGIEQPYTPQGRFIHIPPPYPSGDWATTVGTPWWLDEKYVIGRLTKKTRKIRILNLLVQHEVVLEVPCEDTINEIQRRYLSENDHAGSYTWKRLEK--------PLNMEQTLEENGIPDEEMRLRELGINPDDHIPTLHLYFNDDLTVA 236          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig83.17305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS97_ECTSI7.230e-14778.62Cytochrome b5 n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A6H5KWF6_9PHAE1.730e-10464.39Cytochrome b5 heme-binding domain-containing prote... [more]
A0A836C925_9STRA1.090e-9352.59Cytochrome b5 n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A7S2F938_9STRA2.750e-7846.62Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2C328_9STRA1.550e-7443.66Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2WHL5_9STRA6.750e-7343.54Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
K3WC11_GLOUD5.010e-7145.59Cytochrome b5 heme-binding domain-containing prote... [more]
A0A8K1CLP1_PYTOL1.380e-7045.35Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S1TZ39_9STRA4.470e-7041.08Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
F0VIR4_NEOCL6.890e-7042.91Cytochrome b5 domain-containing protein 1 n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig83contigL-elsbetiae_contig83:18319..22642 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score263.8
Seed ortholog evalue4.4e-68
Seed eggNOG ortholog2880.D7FS97
Preferred nameCYB5D1
KEGG koko:K05747,ko:K11448,ko:K11642
KEGG Pathwayko04062,ko04144,ko04520,ko04530,ko04666,ko04810,ko05100,ko05130,ko05131,ko05132,ko05231,map04062,map04144,map04520,map04530,map04666,map04810,map05100,map05130,map05131,map05132,map05231
Hectar predicted targeting categoryother localisation
EggNOG free text desc.heme binding
EggNOG OGsCOG5274@1,KOG0537@2759
EC3.6.4.12
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036,ko04131,ko04812
Ec32 ortholog descriptionCytochrome b5
Ec32 orthologEc-05_004830.1
Exons6
Model size1062
Cds size423
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig83.17305.1prot_L-elsbetiae_contig83.17305.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig83 18553..21142 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816913.4569237-UTR-L-elsbetiae_contig83:18318..185521622816913.4569237-UTR-L-elsbetiae_contig83:18318..18552Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig83 18319..18552 -
1691683907.8094954-UTR-L-elsbetiae_contig83:18318..185521691683907.8094954-UTR-L-elsbetiae_contig83:18318..18552Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig83 18319..18552 -
1622816913.5273495-UTR-L-elsbetiae_contig83:21142..214451622816913.5273495-UTR-L-elsbetiae_contig83:21142..21445Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig83 21143..21445 -
1691683907.8702745-UTR-L-elsbetiae_contig83:21142..214451691683907.8702745-UTR-L-elsbetiae_contig83:21142..21445Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig83 21143..21445 -
1622816913.5427468-UTR-L-elsbetiae_contig83:22540..226421622816913.5427468-UTR-L-elsbetiae_contig83:22540..22642Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig83 22541..22642 -
1691683907.8792415-UTR-L-elsbetiae_contig83:22540..226421691683907.8792415-UTR-L-elsbetiae_contig83:22540..22642Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig83 22541..22642 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816913.4698904-CDS-L-elsbetiae_contig83:18552..186991622816913.4698904-CDS-L-elsbetiae_contig83:18552..18699Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig83 18553..18699 -
1691683907.821385-CDS-L-elsbetiae_contig83:18552..186991691683907.821385-CDS-L-elsbetiae_contig83:18552..18699Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig83 18553..18699 -
1622816913.48041-CDS-L-elsbetiae_contig83:19715..197901622816913.48041-CDS-L-elsbetiae_contig83:19715..19790Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig83 19716..19790 -
1691683907.8304229-CDS-L-elsbetiae_contig83:19715..197901691683907.8304229-CDS-L-elsbetiae_contig83:19715..19790Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig83 19716..19790 -
1622816913.4903772-CDS-L-elsbetiae_contig83:20028..201271622816913.4903772-CDS-L-elsbetiae_contig83:20028..20127Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig83 20029..20127 -
1691683907.8397117-CDS-L-elsbetiae_contig83:20028..201271691683907.8397117-CDS-L-elsbetiae_contig83:20028..20127Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig83 20029..20127 -
1622816913.5010607-CDS-L-elsbetiae_contig83:20635..207291622816913.5010607-CDS-L-elsbetiae_contig83:20635..20729Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig83 20636..20729 -
1691683907.849638-CDS-L-elsbetiae_contig83:20635..207291691683907.849638-CDS-L-elsbetiae_contig83:20635..20729Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig83 20636..20729 -
1622816913.5132957-CDS-L-elsbetiae_contig83:21134..211421622816913.5132957-CDS-L-elsbetiae_contig83:21134..21142Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig83 21135..21142 -
1691683907.8612897-CDS-L-elsbetiae_contig83:21134..211421691683907.8612897-CDS-L-elsbetiae_contig83:21134..21142Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig83 21135..21142 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig83.17305.1

>prot_L-elsbetiae_contig83.17305.1 ID=prot_L-elsbetiae_contig83.17305.1|Name=mRNA_L-elsbetiae_contig83.17305.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=141bp
MGRFLHVPPNFPTTKWSTNFGLPWWRDPKRVVGKLTRKARPLRVVNILSR
QEDQLLVACENTIADIQERYLEYNAHAASYTWKVLREEASSSKFVPANMD
QTLEENGIVDDDLAFEKLGIDDDGYMPVLHIYFNDDLTIA*
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mRNA from alignment at L-elsbetiae_contig83:18319..22642-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig83.17305.1 ID=mRNA_L-elsbetiae_contig83.17305.1|Name=mRNA_L-elsbetiae_contig83.17305.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4324bp|location=Sequence derived from alignment at L-elsbetiae_contig83:18319..22642- (Laminarionema elsbetiae ELsaHSoW15)
GACGACGAGCGGGAGAGCACTGCGAAGACAAAGTACTACACTCCGGACGA TGTGGCCCTGCACAACTGCACGGAAGACTGCTGGTTATCCCTTTTTGGGC AGGTACAGGAGAAAATAACCGACATGCTTGCAGTCCACGGGCTGGCGGAA GCCGCCATGACCTCGGGCGTCATATAGTCTATGAGTGCTCCTGGTCGTTT GTATATCTAGTCTAGCTATATCTAGTTGCTGCAGCTTGGCACAGCTGTAG AAGTAGACTACTCTGCTGTAGTGTGGTCGCCTCACACGACAACGAGGCCG GAAAGGAAAGAGTGGTTCCACGCATGGGTACCAGAGTAAGAACATTTGGA AGTCGTAGGTGGTTTGGTTGCGTTATATTTGCCGAACATCATTTCAGATC CCTTCTTTAATTACAGCCGATCGACCCCCCGGTTCAAACGGAACTGCCGT GTGGGCTTGGGGCCACGAGGCGTATGGGGCCACTTTTTGGCCCCAAGTGA TATGCCAAACTTTTCGACCCCCTTTCACCACGCGGCCCTAATTCCTTCTC TGGAATCCCTGTTGAATGGCCCCAGATAGATGGGTTTGGGGCCATTCAAT AGGGATTTTAGAGTTGGGATTTGTCACAGGGGACTGTGAGTAAGATGCAA TCACAGCTCTGGAAAATATAGAAAAGTATTGGCATCGTCAGGGGGTCATG TTGGACGATCAATTTGATCTTTCAAAGCACGTTGGACACTTTTGGGCGGC GAAAACATCAAAACAGACACTCATCTACAGCAGCTGCCAATATGTGCACG TACCAGGTATCTTCTTTATGGCCAGCACCTAAGCTTGGTGTGTGGCATCT AGACAATGTGCATCTCAAATGTATTGACACGTGTGGAGTATACCGCAGTG GACCAGCCTCCAACCAACTAACCCAAACCGCGAAAACCTGCGCACAGGCG GATTATATTGTAAATGCACCACGCGTAGTCGGGGCTGTGACTCCTAACAT AAACCCGTGCCCAATAGGACTAGACGACGGCTCCCTGTTCGGCTATTTGT CGCTGGGCTAGCCAAATAAACCCACAGCAGGGATATCAGACTTTCAAGCC CGAAAAAGCAACGGAGCAACTTCGAGAACATTTACTAATGTCGCAGTTGG GGCCCTACTGATGTTACTTCGCGGTGCGCCAATTGTGCAATCATCAGGTG GTGGACTTAACGGAGCTGATAATTGCAAATAGAGGGCCGCTGGCAGACCC GCTAATCGCGGCCGCGGGCACGGATATTTCACACTGGTTTTCCCTGTCAT CATTGCCTGACGGCAACAAATCAAGAGCCGGGGGGGCTAGTGATAGTAGC AAATCGGGTGCAGGGGTATCGTCAACCAAGGCGGCAAAAGAAAGCGGTGG TGACAATAGTGTTACCGGGCGGCCGGACGAGTGCGAGAAAGTGGGAGACC CTCGCACATTCGTCGATCCTCACACCGGCCTGACAGTGCCGTATCTCCCG ATGGGAAGGTGGGTTGATTGGCGAGCGGATGGACTGCATGCAAGGCCACA ACATGTGCTCTGCCACAAAAACCTCCAACTGTGGCTCAATCACGGGAGAT TGGCCGTGCAGGATACAACAGGAGTATGCAATAGTTGCTGTGCTGGTTAC AGTATAGTGGGGGGTCTCCTCAATGACGCGCTAGGTACCGCTTAGCGTTG TTGAGCTCCTTGTTGTAAAATCTAAACTGGTGCGAAATCATCTCAAAGCA GAGGAGGGGCACGGAAAACTACGCGGACGATCGATCACGACGTTGACGGT ATTTAGTTTCAGATCTCTTCGCGCTAGATGTGTTATTTTTTGTGACGCAT TGCGCCTTATTCTAGCCCTCCACCGACTTATGGTCCTCCAATGCGCGCCT GTTTTCGGTTCAGGTTCTTGCACGTGCCACCTAACTTTCCTACAACCAAG TGGAGCACTAATTTCGGCCTCCCTTGGTGGCGGGATCCGAAGAGAGTCGT AGGCAAGGTGCGAAGCAATGGACGTTGATTAGTTCCGTCGTTGGCTGCCG AGAGTAAATTTATTATTATCATCAGCACTCCTACTCTGTGTGTGGGGCGT TGATCATCTGAACATTTCTCTGCTCGGTTCGATGTTGCATTACGCATTTG CAGTAGCACATGTTGCAGCAGCACATATTGCAGTAGCACGTATTGCTGGC GTATCCATACGCAATACGCAATACAAGAGCTGCCACACACACCGTTCCTA CTACGTAGACTATCTGGAAGGCTTTTGCCACTGGGAACGGCAAATTCTCC CGCCGTCCATCACGAAAATGTCGCCTTTTCTTACCTATATTTTCTAGGAA TACTTTTGAGGTTTCATAAAACTCCTTCCGTGCTCGCTTGGATACTACGT AAGCACCGTAGGATGTGATCCCGATTGTCCTCGTCGATAGTAAGATTATA TTAAAATACGGTGGGAATCTCACGTGTCTTAATTTTAGAAACCTGCTGTG TCCTGCTGCACGCAGCTCACTCGGAAAGCGCGGCCGCTGCGGGTGGTAAA CATCCTTTCGCGGCAAGAAGATCAGCTACTGGTGGCTTGTGAGAACACCA TTGCAGATATCCAGGTACCAGGCCTGAAGGCAGGCGGTAGATTAATGTCT TCACTTAGACTAGATATACCTTCGAGAATCGGTTCACACGCCCAATCATC GGATATGTTGCACAGGTCAAGCTCGGCGCTATTGCCTGAATACCACACAC TAGTTACCCCGCACCCCGTAGCGCAGCGGTTCAGCTAAAACCTGGAGAAT GTTCGCCGCATCTATGATAGGTCCCCGCCTCTTTCTCTCGTGCTTTGTAC AGGAGCGCTACCTAGAGTATAACGCCCACGCTGCGAGCTACACCTGGAAG GTGCTGCGGGAAGAGGCAAGTTCAAGCGTCACCGCCTTGCGTAGAATAAT GCTCATTCTCTTCGGGCTCACCACCGGCTCAAAGACGACTTCGGCTCTTC CTGCTCAGTTCGATGAGTTACCTATTGCGTGAGAACGGTCGGGGTAGCAT CGGGTTGGCAACGATGCTGGAAAACATGCCAATCAATGCAAGTGCTACAT ATGGAACATATTTAATCTAGGCCTCCAGGTTCCGGGGGTTGCTGTATGTA GTATATTTTTGGCGACCAATGGTGGGGATAGAGAGTTGGATCGTGTTGTC CGGGGTGGCAAACCTACACTCCGCACAACGGAATGATCACTCCGAGTAAC ACATGTATAACTGTCGATGGAATTTCTCGAGCCACGAAACATGTGTGAAA GTTTTACCGGCTAAGCCGAACATGCTTCACAGAATGCAGCTCAAACGCCG TGCCATTCTTGCTCTGTCGACGATTTTTTATTATTTCGGATCTGAGCACG AACTTCGCGGCCCAGGAGCTGCTGCCTTGAAGGCTCAGATGACACCACCT CTCTTTCCGTGTACGCATGAACCTTGAAGCCGCCTCAACTCGATACGAGA CATCTGTGACCCAAACCTACAATATTGTAGCCTAGATGTGTATTTGTGAA TGTGCCTAGATGTGCAAACAACGTGGACAGAACAAACCACATAACGTAGG ACCACCCCCCCTGGACAGATTTTCAAAGCTCGAGTGCTCCCCAATACGGA GAGTGCCAGTGCTGAAATAGGGTGGCGTGGGAAAGATCGCTGTCCGGCAA TGTGTCGTTTAGTGCTGGCGCCCTCTTCGCTACGGAGGAATCCAGCTTTG CAAACCTGTCCAGAGGGTGTGGTATCTTGTGTGTCACTTATGGTAGATAG ACGTGTATCCGTCTTGTCCTCTCCTTGAGAAAAAACGATTTCAATTCTCG GGTTTGACACCAAATAACAGAGAAAGATAATCACATTGCTCAGAAGCACT TCGGACGTCTCGGTGCACGCATTTCGTCTTTGATTTTTAGCAGAAGTTCG TGCCAGCGAACATGGACCAGACCCTGGAAGAGAATGGCATTGTGGACGAC GATCTCGCCTTCGAGAAGCTTGGCATCGACGATGATGGGTACATGCCTGT TCTGCACATCTACTTTAACGACGATCTTACAATCGCATGAAAGGGACAAC CTCCACGGGGATAACCTCCTCCCCACATGCGCACACAGGGAGGAAGGAGA AGCGCCCAAGAACGACGCGTGTGCAGCCAGAAGAGAACCTGCTGGGTAAA GGAGTCAATGATCTTTGAGAGACAGGGATAGGGAGTGCAAGGCGGCCGAT GGCAACAGCGGCTACACGGCGGCCTTTCTTCAAAAATTTTTCATGGTCAA ATCCTGTGCCGGTGGTTAGACGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig83:18319..22642-

>mRNA_L-elsbetiae_contig83.17305.1 ID=mRNA_L-elsbetiae_contig83.17305.1|Name=mRNA_L-elsbetiae_contig83.17305.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=846bp|location=Sequence derived from alignment at L-elsbetiae_contig83:18319..22642- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGAAGATGGGAAGGTTCTTGCACGTGCCACCTAACTTTCCTACAACC
AAGTGGAGCACTAATTTCGGCCTCCCTTGGTGGCGGGATCCGAAGAGAGT
CGTAGGCAAGGTTCTTGCACGTGCCACCTAACTTTCCTACAACCAAGTGG
AGCACTAATTTCGGCCTCCCTTGGTGGCGGGATCCGAAGAGAGTCGTAGG
CAAGCTCACTCGGAAAGCGCGGCCGCTGCGGGTGGTAAACATCCTTTCGC
GGCAAGAAGATCAGCTACTGGTGGCTTGTGAGAACACCATTGCAGATATC
CAGCTCACTCGGAAAGCGCGGCCGCTGCGGGTGGTAAACATCCTTTCGCG
GCAAGAAGATCAGCTACTGGTGGCTTGTGAGAACACCATTGCAGATATCC
AGGAGCGCTACCTAGAGTATAACGCCCACGCTGCGAGCTACACCTGGAAG
GTGCTGCGGGAAGAGGCAAGTTCAAGCGAGCGCTACCTAGAGTATAACGC
CCACGCTGCGAGCTACACCTGGAAGGTGCTGCGGGAAGAGGCAAGTTCAA
GCAAGTTCGTGCCAGCGAACATGGACCAGACCCTGGAAGAGAATGGCATT
GTGGACGACGATCTCGCCTTCGAGAAGCTTGGCATCGACGATGATGGGTA
CATGCCTGTTCTGCACATCTACTTTAACGACGATCTTACAATCGCATGAA
AGTTCGTGCCAGCGAACATGGACCAGACCCTGGAAGAGAATGGCATTGTG
GACGACGATCTCGCCTTCGAGAAGCTTGGCATCGACGATGATGGGTACAT
GCCTGTTCTGCACATCTACTTTAACGACGATCTTACAATCGCATGA
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