mRNA_L-elsbetiae_contig8296.17303.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8296.17303.1
Unique NamemRNA_L-elsbetiae_contig8296.17303.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig8296.17303.1 vs. uniprot
Match: A0A6H5L335_9PHAE (HECT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L335_9PHAE)

HSP 1 Score: 449 bits (1154), Expect = 7.310e-150
Identity = 234/275 (85.09%), Postives = 237/275 (86.18%), Query Frame = 3 
Query:  177 MGNT---PPQAPAAGHASVSAASGPGRRLGANSPLTRHIAAASSAHR--AGRTRTGGVPAEQNPGAYSIPGAGGRNQNDSIPYTVTVPNGVRPGQEFQVMAGGLPMVVRCPPDVSGGSRIMVLVPRQHRQQQSRNAQVYMATVPPGVSPGGEFNVMVNSHPVRVACPPNVTPGMQIRIRLEEPQGALHQTFEVAVPQGVRPGQPFALIAGGQRVMVHCPHDARPGQKIRFQLPIQLSEAQLQTYNIHYSGKDGWVRCVGTDLKFHWVRHDEDASD 986
            MGNT   P  A AA        +  GRR   N P      AA +A R  AGR RTGGVPAEQNPGAYSIPGAG R   DSIPYTVTVPNGVRPGQEFQVMAGGLPMVVRCPPDVSGGSRIMVLVPRQHRQQQSRNAQVYMATVPPGVSPGGEFNVMVNSHPVRVACPPNVTPGMQIRIRLEEP GALHQTFEVAVP GVRPGQPFALIAGGQRVMVHCPHDARPGQKIRFQLPIQLSEAQLQTYNIHYSGKDGWVRCVGTDLKFHWVRHDED +D
Sbjct:    1 MGNTDSSPSTATAASSNGGVTTAAQGRREVINRPRPALSLAARTAPRPAAGR-RTGGVPAEQNPGAYSIPGAGSRTNVDSIPYTVTVPNGVRPGQEFQVMAGGLPMVVRCPPDVSGGSRIMVLVPRQHRQQQSRNAQVYMATVPPGVSPGGEFNVMVNSHPVRVACPPNVTPGMQIRIRLEEPHGALHQTFEVAVPPGVRPGQPFALIAGGQRVMVHCPHDARPGQKIRFQLPIQLSEAQLQTYNIHYSGKDGWVRCVGTDLKFHWVRHDEDGAD 274
[Close]
BLAST of mRNA_L-elsbetiae_contig8296.17303.1 vs. uniprot
Match: A0A6U1LR94_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1LR94_9STRA)

HSP 1 Score: 269 bits (687), Expect = 5.910e-86
Identity = 136/209 (65.07%), Postives = 161/209 (77.03%), Query Frame = 3 
Query:  351 PGAYSIPGAGGRNQN--DSIPYTVTVPNGVRPGQEFQVMAGGLPMVVRCPPDVSGGSRIMVLVPRQHRQQQSRNAQVYMATVPPGVSPGGEFNVMVNSHPVRVACPPNVTPGMQIRIRLEE---PQGALHQTFEVAVPQGVRPGQPFALIAGGQRVMVHCPHDARPGQKIRFQLPIQLSEAQLQTYNIHYSGKDGWVRCVGTDLKFHWV 962
            PGAYS+PG+  +NQ+  +S+PY+VTVP G+RPGQEFQ+ AGG PM+VRCP D   GSRIMV+ PRQ      RN Q+YM TVPPGV+PG  F VMVN   + V CPPNV PGMQ+RI L +    Q  L+QTFEV VP GVRP QPFALIA GQRVMV+CP DARPGQKIRFQLP+QLS   L+++ ++Y+ KDGWVRCVG DLKFHWV
Sbjct:   65 PGAYSVPGSR-QNQSGQESMPYSVTVPPGIRPGQEFQIFAGGNPMMVRCPEDCGPGSRIMVMAPRQ-----PRNQQIYMVTVPPGVNPGDRFAVMVNGERMNVTCPPNVRPGMQLRISLPDRKPQQNQLNQTFEVVVPAGVRPRQPFALIANGQRVMVNCPADARPGQKIRFQLPMQLSAEHLESFKLNYN-KDGWVRCVGIDLKFHWV 266
[Close]
BLAST of mRNA_L-elsbetiae_contig8296.17303.1 vs. uniprot
Match: A0A836CEL7_9STRA (Ubiquitin protein ligase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEL7_9STRA)

HSP 1 Score: 228 bits (581), Expect = 1.860e-65
Identity = 120/226 (53.10%), Postives = 146/226 (64.60%), Query Frame = 3 
Query:  336 PAEQNPGAYSIPGAG-GRNQNDSIPYTVTVPNGVRPGQEFQVMAGGLPMVVRCPPDVSGGSRIMVLVPRQHRQQQSRNAQVYMATVPPGVSPGGEFNVMVNSHPVRVACPPNVTPGMQIRIRLEEP--------QGALHQTFEVAVPQGVRPGQPFALIAGGQRVMVHCPHDARPGQKIRFQLPIQLSEAQLQTYNIHYSGKDGWVRCVGTDLKFHWVRHDEDASD 986
            P    PGAY++ GA   R  N+++PYTV VP GVRPGQ+F VMAGG+P              IMV+VPRQ + +    +QVY  TVP G+ PGG+F+V++N+  V V C        QIRIRL E            LHQTFE          QPFALIA GQRVMVHCP+DARPGQKIRFQ+PIQLSE++L+ Y+I+Y  ++GWVRCVGTDLKFHW RHD  A D
Sbjct:   25 PDHGRPGAYTVAGAQHNRPANEAVPYTVVVPRGVRPGQQFPVMAGGVPXXXXXXXXXXXXXHIMVMVPRQ-QPRPPPTSQVYTTTVPEGIQPGGQFSVLINNRSVNVTCXXXXXXXTQIRIRLPETAPKAPAANNSTLHQTFEXXXXXXXXXXQPFALIANGQRVMVHCPYDARPGQKIRFQVPIQLSESELKAYSINYE-QEGWVRCVGTDLKFHWARHDGAAPD 248
[Close]
BLAST of mRNA_L-elsbetiae_contig8296.17303.1 vs. uniprot
Match: F0YHF6_AURAN (HECT domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHF6_AURAN)

HSP 1 Score: 187 bits (475), Expect = 3.740e-50
Identity = 117/277 (42.24%), Postives = 148/277 (53.43%), Query Frame = 3 
Query:  279 HIAAASSAHRAGRTRTGGVPAEQNPGAYSIPGAGGRNQNDSIPYTVTVPNGVRPGQEFQVMAGGLPMVVRCPPDVSGGSRIMVLVPRQHRQQQSRNAQVYMATVPPGVSPGGEFNVMVNSHPVRVACPPNVTPGMQIR-------------IRLEEP-------QGAL----------------------------HQTFEVAVPQGVRPGQPFALIAGGQRVMVHCPHDARPGQKIRFQLPIQLSEAQLQTYNIHYSGKDGWVRCVGTDLKFHWVR 965
            H  A +++  +    T  VP    PGAYS+PG+    Q     + VTVP G+RPGQEF V+A G  ++VR         RI+V  PR      S+  Q YMATVP GV  G +F V+VN+  + V C     PGMQ+R             +R+  P       QG +                            +Q FEV VPQGVRPGQ FALIA GQRVMV CP +ARPGQKIRFQLPI+LS  ++Q+  ++Y  KDGW+RC+ TDL FHWVR
Sbjct:   20 HTGATTNSRISNSQSTSSVP----PGAYSVPGS----QRRQAQFYVTVPAGIRPGQEFPVIANGQQLMVRXXXXXXXXXRIVVSAPRS-----SQGTQAYMATVPHGVRSGEQFPVLVNNQQLMVTCXXXXXPGMQVRTVFKSVCNSLFKQVRIMVPTSRRGANQGTMSSVQGGGSPSRGASPSSQSNDAVRSPFGNQMFEVNVPQGVRPGQAFALIANGQRVMVTCPANARPGQKIRFQLPIKLSSDEIQSIKLNYQ-KDGWIRCLSTDLTFHWVR 282
[Close]
BLAST of mRNA_L-elsbetiae_contig8296.17303.1 vs. uniprot
Match: A0A7S3ZRC6_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZRC6_9STRA)

HSP 1 Score: 174 bits (440), Expect = 1.910e-46
Identity = 104/238 (43.70%), Postives = 133/238 (55.88%), Query Frame = 3 
Query:  351 PGAYSIPGAGGRNQNDSIPYTVTVPNGVRPGQEFQVMAGGLPMVVRCPPDVSGGSRIMVLVPRQHRQQQSRNAQVYMATVPPGVSPGGEFNVMVNSHPVR-------------------------VACPPNVTPGM--------QIRIRLEEPQGALHQTFEVAVPQGVRPGQPFALIAGGQRVMVHCPHDARPGQKIRFQLPIQLSEAQLQTYNIHYSGKDGWVRCVGTDLKFHWVR 965
            PGAYS+PG+    Q     + VTVP G+RPGQEF V+A G  ++VR         RI+V  PR      S+  Q YMATVP GV  G +F V+VN+  +                          ++ P  + P          ++   +  P G  +Q FEV VPQGVR GQ FALIA GQRVMV CP +ARPGQKIRFQLPI+LS  ++Q+  ++Y  KDGWVRC+ TDL FHW+R
Sbjct:   40 PGAYSVPGS----QRRQAQFYVTVPAGIRPGQEFPVIANGQQLMVRXXXXXXXXXRIVVSAPRN-----SQGTQAYMATVPHGVRSGEQFPVLVNNQQLXXXXXXXXXXXXXXRIMVPTSRRGTSLSTPQEMDPSSSSSGSENARVNSHMRSPFG--NQMFEVNVPQGVRSGQAFALIANGQRVMVTCPANARPGQKIRFQLPIKLSSDEIQSIKLNYQ-KDGWVRCLSTDLTFHWIR 265
[Close]
BLAST of mRNA_L-elsbetiae_contig8296.17303.1 vs. uniprot
Match: A0A6S8T4N2_9STRA (Hypothetical protein n=12 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8T4N2_9STRA)

HSP 1 Score: 174 bits (440), Expect = 2.490e-45
Identity = 104/238 (43.70%), Postives = 133/238 (55.88%), Query Frame = 3 
Query:  351 PGAYSIPGAGGRNQNDSIPYTVTVPNGVRPGQEFQVMAGGLPMVVRCPPDVSGGSRIMVLVPRQHRQQQSRNAQVYMATVPPGVSPGGEFNVMVNSHPVR-------------------------VACPPNVTPGM--------QIRIRLEEPQGALHQTFEVAVPQGVRPGQPFALIAGGQRVMVHCPHDARPGQKIRFQLPIQLSEAQLQTYNIHYSGKDGWVRCVGTDLKFHWVR 965
            PGAYS+PG+    Q     + VTVP G+RPGQEF V+A G  ++VR         RI+V  PR      S+  Q YMATVP GV  G +F V+VN+  +                          ++ P  + P          ++   +  P G  +Q FEV VPQGVR GQ FALIA GQRVMV CP +ARPGQKIRFQLPI+LS  ++Q+  ++Y  KDGWVRC+ TDL FHW+R
Sbjct:   40 PGAYSVPGS----QRRQAQFYVTVPAGIRPGQEFPVIANGQQLMVRXXXXXXXXXRIVVSAPRN-----SQGTQAYMATVPHGVRSGEQFPVLVNNQQLXXXXXXXXXXXXXXRIMVPTSRRGTSLSTPQEMDPSSSSSGSENARVNSHMRSPFG--NQMFEVNVPQGVRSGQAFALIANGQRVMVTCPANARPGQKIRFQLPIKLSSDEIQSIKLNYQ-KDGWVRCLSTDLTFHWIR 265
[Close]
BLAST of mRNA_L-elsbetiae_contig8296.17303.1 vs. uniprot
Match: A0A7S3JWL0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JWL0_9STRA)

HSP 1 Score: 149 bits (377), Expect = 1.400e-36
Identity = 97/248 (39.11%), Postives = 119/248 (47.98%), Query Frame = 3 
Query:  351 PGAYSIPGAGGRNQNDSIPYTVTVPNGVRPGQEFQVMAGGLPMVVRCPPDVSGGSRIMVLVPRQHRQQQSRNAQVYMATVPPGVSPGGEFNVMVNSHPVRVACPPNVTPGMQIRIRLE---------------------------EPQGAL---------HQTFEVAVPQGVRPGQPFALIAGGQRVMVHCPHDARPGQKIRFQLPIQLSEAQLQTYNIHYSGKDGWVRCVGTDLKFHWVRHDEDASD 986
            PGAYS+PG+    Q     + VTVP G+R GQEF V+A G  ++VRCPP +  G RI+V  PRQ         Q YMA                                   RI +                             P G +         +Q FEV VPQGVRPGQ FALIA GQRVMV CP +AR G KIRFQLPI+LS  ++Q+  ++Y  KDGWVR + TDL FHWVR +  A +
Sbjct:   67 PGAYSVPGS----QRRPAQFYVTVPAGIRTGQEFPVIANGQQLMVRCPPGIRAGERIVVSAPRQQ--------QAYMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIMVPTQRNNSXXXXXXXXXXXXXXXGSTNTLSPPGGMDDANRSPFGNQMFEVNVPQGVRPGQAFALIANGQRVMVTCPPNARQGMKIRFQLPIKLSSDEIQSIKLNYQ-KDGWVRTLSTDLTFHWVRSESIAKE 301
[Close]
BLAST of mRNA_L-elsbetiae_contig8296.17303.1 vs. uniprot
Match: A0A7S2B6P4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B6P4_9STRA)

HSP 1 Score: 148 bits (374), Expect = 2.740e-36
Identity = 101/262 (38.55%), Postives = 130/262 (49.62%), Query Frame = 3 
Query:  264 SPLTRHIAAASSAHRAG------------RTRTGGVPAEQNPGAYSIPGAGGRNQNDSIPYTVTVPNGVRPGQEFQVMAGGLPMVVRCPPDVSGGSRIMVLVPRQHRQQQSRNAQVYMATVPPGVSPGGEFNVMVNSHPVRVACPPNVTPGMQIRIRLEEPQGALHQT---------FEVAVPQGVRPGQPFALIAGGQRVMVHCPHDARPGQKIRFQLPIQLSEAQLQTYNIHYSGKDGWVRCVGTDLKFHWVRHDEDASD 986
            S  +  + AASSA+ AG            R+R+G       PGAYS+PG   R QN    + VTVP GVRPG EF V+AGG  ++VRCP  V  G RI+V  P +      R  +                                            + Q    QT         +EV VP GVRPGQPFALIA GQRVMV CP  A+PGQKI+F+LPIQ+S  ++++  + Y  K+GW RC+ TDLKF+WVR  + A +
Sbjct:   22 SSYSSDVRAASSANTAGSGPSTQSHSASDRSRSGN---SVGPGAYSVPG-NPRKQNQQ--FYVTVPRGVRPGHEFPVLAGGHQLMVRCPAGVRTGDRIVVSAPNR------RGTEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTQRPTQQTSSSPFGDTMYEVVVPTGVRPGQPFALIANGQRVMVTCPPRAQPGQKIQFRLPIQMSADEIKSIKLSYE-KEGWTRCLSTDLKFNWVRQGKKADE 270
[Close]
BLAST of mRNA_L-elsbetiae_contig8296.17303.1 vs. uniprot
Match: A0A7S2K461_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K461_9STRA)

HSP 1 Score: 145 bits (365), Expect = 4.560e-35
Identity = 87/219 (39.73%), Postives = 121/219 (55.25%), Query Frame = 3 
Query:  396 DSIPYTVTVPNGVRPGQEFQVMAGGLPMVVRCPPDVSGGSRIMVLVPRQHRQQQSRNAQVYMATVPPGVSPGGEFNVMVNSHPVRVACPPNVTPGMQIRIRLEEPQGALH------------------------QTFEVAVPQGVRPGQPFALIAGGQRVMVHCPHDARPGQKIRFQLPI-QLSEAQLQTYNIHYSGKDGWVRCVG-TDLKFHWVRHDE 974
            D I + VT+P G++PG+EFQV AG   + VRCP +  GG  I + VP   + Q+  +  V + TVPPG+ PG  FNV ++   V             +R++L++P+ A                          QTFEV VP+GV+PGQ FAL+AGGQRV+V+CP  A+PGQKIRF+L I Q  +A  +       G+DGW R +  TD +  W+R DE
Sbjct:   47 DKITFRVTIPPGIKPGEEFQVNAGTRLVRVRCPTNCRGGQTIQITVPAGAQGQEPADNFVNV-TVPPGIRPGQPFNVRIHGREVTXXXXXXXXXXXXVRVQLQDPRVANGASIDRPPPKRKPLGEEGKKSSTKLQTFEVLVPRGVKPGQSFALMAGGQRVLVNCPLTAQPGQKIRFKLHISQAGQASTR----FLKGRDGWTRTMRVTDQRLQWIRLDE 260
[Close]
BLAST of mRNA_L-elsbetiae_contig8296.17303.1 vs. uniprot
Match: A0A6T5VL12_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A6T5VL12_9STRA)

HSP 1 Score: 139 bits (351), Expect = 3.550e-33
Identity = 84/222 (37.84%), Postives = 115/222 (51.80%), Query Frame = 3 
Query:  408 YTVTVPNGVRPGQEFQVM--AGGLPMVVRCPPDVSGGSRIMVLVPRQHRQQQSRNAQ---VYMATVPPGVSPGGEFNVMVNSHPVRVACPPNVTPGMQIRIRLEEPQ---------------GALH----------QTFEVAVPQGVRPGQPFALIAGGQRVMVHCPHDARPGQKIRFQLPIQLSEAQLQTYNIHYSGKDGWVRCVG-TDLKFHWVRHDEDA 980
            + V++P GV PGQEFQV   +G   + VRCP +  GG  I + VP     +     Q       T+PPG+ PG  F V +    + V CP    PG+ IR+ L  P+                ++H          QTFEV VP+GVRPGQ FAL+AGGQRV++ CP +A+PGQKIRF+L     +     +     G+DGW R +  +D +  W+R DED 
Sbjct:   47 FRVSIPPGVVPGQEFQVRVNSGTRIVRVRCPRNCRGGQIIQITVPVDDVPEPPSEPQGPNFASVTIPPGIRPGQTFTVHLQGRNINVTCPVGCGPGISIRVALPPPEVVNANNIDRPPEETGRSMHNEIKTADTRIQTFEVQVPRGVRPGQSFALMAGGQRVLISCPPNAQPGQKIRFKLQTSTGQTAPTKF---LKGRDGWTRTMRVSDQRLQWIRLDEDG 265
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8296.17303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L335_9PHAE7.310e-15085.09HECT domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6U1LR94_9STRA5.910e-8665.07Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A836CEL7_9STRA1.860e-6553.10Ubiquitin protein ligase (Fragment) n=1 Tax=Tribon... [more]
F0YHF6_AURAN3.740e-5042.24HECT domain-containing protein n=1 Tax=Aureococcus... [more]
A0A7S3ZRC6_9STRA1.910e-4643.70Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A6S8T4N2_9STRA2.490e-4543.70Hypothetical protein n=12 Tax=Pelagomonas calceola... [more]
A0A7S3JWL0_9STRA1.400e-3639.11Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2B6P4_9STRA2.740e-3638.55Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2K461_9STRA4.560e-3539.73Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A6T5VL12_9STRA3.550e-3337.84Hypothetical protein n=1 Tax=Leptocylindrus aporus... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8296contigL-elsbetiae_contig8296:1084..8024 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score454.5
Seed ortholog evalue3.4e-125
Seed eggNOG ortholog2880.D7FM40
KEGG koko:K04678,ko:K10591,ko:K10592
KEGG Pathwayko04011,ko04120,ko04144,ko04340,ko04341,ko04350,ko04530,ko05169,map04011,map04120,map04144,map04340,map04341,map04350,map04530,map05169
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitin protein ligase activity
EggNOG OGsCOG5021@1,KOG0940@2759
EC2.3.2.26
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03029,ko04121,ko04131
Exons6
Model size987
Cds size810
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816913.101986-CDS-L-elsbetiae_contig8296:1083..11551622816913.101986-CDS-L-elsbetiae_contig8296:1083..1155Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8296 1084..1155 -
1691683907.5382805-CDS-L-elsbetiae_contig8296:1083..11551691683907.5382805-CDS-L-elsbetiae_contig8296:1083..1155Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8296 1084..1155 -
1622816913.114293-CDS-L-elsbetiae_contig8296:1926..20541622816913.114293-CDS-L-elsbetiae_contig8296:1926..2054Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8296 1927..2054 -
1691683907.550823-CDS-L-elsbetiae_contig8296:1926..20541691683907.550823-CDS-L-elsbetiae_contig8296:1926..2054Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8296 1927..2054 -
1622816913.1247566-CDS-L-elsbetiae_contig8296:2872..30861622816913.1247566-CDS-L-elsbetiae_contig8296:2872..3086Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8296 2873..3086 -
1691683907.561781-CDS-L-elsbetiae_contig8296:2872..30861691683907.561781-CDS-L-elsbetiae_contig8296:2872..3086Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8296 2873..3086 -
1622816913.135076-CDS-L-elsbetiae_contig8296:4702..47921622816913.135076-CDS-L-elsbetiae_contig8296:4702..4792Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8296 4703..4792 -
1691683907.5719588-CDS-L-elsbetiae_contig8296:4702..47921691683907.5719588-CDS-L-elsbetiae_contig8296:4702..4792Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8296 4703..4792 -
1622816913.1454628-CDS-L-elsbetiae_contig8296:5916..60601622816913.1454628-CDS-L-elsbetiae_contig8296:5916..6060Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8296 5917..6060 -
1691683907.5817661-CDS-L-elsbetiae_contig8296:5916..60601691683907.5817661-CDS-L-elsbetiae_contig8296:5916..6060Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8296 5917..6060 -
1622816913.155928-CDS-L-elsbetiae_contig8296:7686..78481622816913.155928-CDS-L-elsbetiae_contig8296:7686..7848Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8296 7687..7848 -
1691683907.5918362-CDS-L-elsbetiae_contig8296:7686..78481691683907.5918362-CDS-L-elsbetiae_contig8296:7686..7848Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8296 7687..7848 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816913.1677456-UTR-L-elsbetiae_contig8296:7848..80241622816913.1677456-UTR-L-elsbetiae_contig8296:7848..8024Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8296 7849..8024 -
1691683907.6057973-UTR-L-elsbetiae_contig8296:7848..80241691683907.6057973-UTR-L-elsbetiae_contig8296:7848..8024Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8296 7849..8024 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8296.17303.1prot_L-elsbetiae_contig8296.17303.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8296 1084..7848 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8296.17303.1

>prot_L-elsbetiae_contig8296.17303.1 ID=prot_L-elsbetiae_contig8296.17303.1|Name=mRNA_L-elsbetiae_contig8296.17303.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=270bp
MGNTPPQAPAAGHASVSAASGPGRRLGANSPLTRHIAAASSAHRAGRTRT
GGVPAEQNPGAYSIPGAGGRNQNDSIPYTVTVPNGVRPGQEFQVMAGGLP
MVVRCPPDVSGGSRIMVLVPRQHRQQQSRNAQVYMATVPPGVSPGGEFNV
MVNSHPVRVACPPNVTPGMQIRIRLEEPQGALHQTFEVAVPQGVRPGQPF
ALIAGGQRVMVHCPHDARPGQKIRFQLPIQLSEAQLQTYNIHYSGKDGWV
RCVGTDLKFHWVRHDEDASD
back to top

mRNA from alignment at L-elsbetiae_contig8296:1084..8024-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8296.17303.1 ID=mRNA_L-elsbetiae_contig8296.17303.1|Name=mRNA_L-elsbetiae_contig8296.17303.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6941bp|location=Sequence derived from alignment at L-elsbetiae_contig8296:1084..8024- (Laminarionema elsbetiae ELsaHSoW15)
TTGTGCCGGGTCAGTCCCGGAATACCCCACCAGCGCGAAACAAAAACCTC
CCCTTGCCCCTACGAAACATAGCAGCGTGGCAGCGAGAGGCCTCAGAGTC
ATCCTTTCTTCGGCCTCTCTTCAAGTAAAAGTGTTGATTTTATAGCATTG
GGGCGACCGGGAGCGTCCACGCTGCCATGGGAAACACGCCGCCGCAAGCA
CCAGCAGCTGGCCATGCTAGTGTCAGTGCCGCATCGGGACCGGGTCGGAG
GTTAGGTGCTAATTCCCCCCTCACCCGACATATTGCGGCTGCTTCTTCCG
CTCATAGAGCCGGCAGGACAAGGACCGGCGGAGTTCCGGTGAGCCCGACG
AAAGGGGTTGCTCAGAACGCACGGCGTCCGGGGGGGGCAGAGAATAGCTC
GTTGAGAGGAAAAGGTGGTATTGCAGCGGGGTGTGCTTGATGGCGAGTTC
GTAGAAATCGGACGATGTGATCACGAATAAAAAAATCACGGTACTCTCCA
TTTGAACAGACGGAAATCGCCGCCCCTAGATCTAGCCTTGTGTAGAGCCC
TTAACTCTCAACGCGTGTACGCTACCAACTAATAGACTATACCATGCAGA
GTAGATACAGCGCTCTTCTCTCTATCTCGTCGGCAACCGTACGATAGATT
GTGGTGCGAGCGCTGCAAACACCCGAGTTTACCCTGGGGGTGCTTTATCT
GACAGTTTTTTTTATCGAGAAAATCTTGCATACATACACCGTAGGTGACA
CGAAATACCACACCCCCTGGACCGACTTTTAGAGCTCCAATACTCCGTAG
CGAAGGGGGTGCCAGCACCGAACGACACGTTTTCGGGCAGCCCTTAACTA
GGCATTTCCAACGCCACCCCCTTTCGGCGCTGGCACTCTTCTTGCTGGGG
AGGAATCGAGCGTTGGAAATCTGTACAGGGGGTGTGGTATCTTGTGTCAC
CTACGGTATACCAGAAGTATATTGGAGTGCATGTTGGGGGTGTGCATCCA
TAGGTTAGCCTGTGACCACGGAATTGACCGCATCAAGTGTTGGAATAGTA
TGCCCATAGGGAAGTACTGGGTGGAGAGATTGGAACGGTTTTTAATGTGA
AGAAACAACAACCTCAGTGACTAAATTAATATCCGCTCCAAATCGGCAAG
CCGGCAAGTTGAATCTGGAACTTGGCTGTCGATGCGATACGAAAGGGGTG
GGTCGCAGTGCCACCCTGTACTGCATGCCAGAGAGCGGCAACCTACAAAT
ATGACAGGGACCCTGGTTTCTGCCGTTGCTGGCTGAAAAGCTGATCCAAT
GAAGCACCACGTAGTCGTCATCGGCCTCTTCCCCACACCTCAAAAGTATC
CGCACACGCCGTTAGATGTTAGATCCGTGTGTCCCGCACTGCTATGCGTG
CGGTTAGATACACGTACGAAAGCGCTGACTGCTGTTGTTCACCGAACGTG
ACTCTCACGGCACGGCTGGCACGCTAACTGGTTTTGGAAGATGGGCGCAG
TGAAATCTGAAGCTCGCTTGGGATCTATCCAGCGTGCATACAAGTTCCTC
TTTCAGACGTTGCTGCTCACGACCGGAACAATTCAGGGCGGTGAAGCAAC
AGAGCAGTGTTGACTGCTGTTTGAGTTGCGCAACACTATGAGTTGCCGTG
TCACACTAAAGGGCCAGAGCTGGCGTCCGTCGCCACGTGCGTCGCCAGCC
TGAAAAGTCTCCTGGAAAGCCTAGTTCCAGTGCGAGGCTTGACCAACAGC
TCGTAGACCCTGCACCCAGGAAAAACTCAATGCGTATAAATATAGTCATA
ATGACTCGCGCGTTCGTTCTGCATGTACACATGTCAAGGGATGAATACCC
ATGTACATTTTGGACAAGTCCAATGCATGCAAGCCCGTTCTTTTTTTTAG
AAAGAGATCGAAGAAATTCCCTCTTTCTCAGTAATGTGCGCCTTCTGTGT
GTGCGAAAAAATAGGCGGAGCAAAATCCCGGGGCGTACTCCATTCCTGGG
GCCGGAGGGCGCAACCAAAACGACTCCATACCGTACACGGTAACGGTCCC
AAATGGAGTTCGGCCAGGACAGGAGTTCCAGGTCATGGCTGGCGGTTTGC
CAATGGTGGTGAGTAGCGAAGGATGGTAATTCATGAGTGTATCATGCGGG
TGAAGAAGTCCTCTCTTTCTTTCGTTCCGCACTGGAGATGTGGAGGTGGG
TGGCGGCGGCGTGGTTAAACAACCCCCCCCGTAGATGTGTACTGACTGTA
ATCTTAATAGCTCCCTCGTGCAAGCCTGTCGTGTTCTCTTGTTTCGGCAG
CTCTCTCGTGCAAGCCTGTCGTGTTCTCTTGTTTCGGCAGCTCTCTCGTG
CAAGCCTGTCGTGATCTCTTGTTTTAGCATTACCGCATCCTGGCCAATGA
AACTTCAGCCTTATCGTCTTGTGTGAGCGGAGCAAAACAACGTTAGGACG
CTGTGTCTCTTTCTCTATCTACTACATACTGCTGCGAAGCAGGATCCCCT
GGGGCAGGATCCCCTGGGGCTACCTACCCACAGGGTGAAAAGAGTGGCAG
GGTTTAAACACCACCCGAAAATATAAATGTGTTACTTTACAACAGTGTAG
CATGTGTTTGTGTGTGTGTGTGTTTTTTTTTTAGTGTCTTGTTTGACTCG
TGTTAGGTGACCTTAGAGCTGTGGTGTTCGTGAGCCTGGAGCCGTCGATG
TAGTCCAGTGCTCCTCCCTCGGCTTTTCTGCCCTAAAAACCGGATGCAGC
GTCATGTCTGCAGCACGTGTTACTTCTCTTTTCCCGGGACTCCCACCCGG
CAGCCATTCCAGCGTCAGATAAGAGATACCTTCCTTCGCTCTCGTTGTTG
GTTTCTGCGTGTCTCCTGCCGCAAGCCCATCTGCCCGCAACAAACTGCGG
CGAAAAGTCGGCGTGGCGTTGCCGTTGCCGGTCGTGTTTGTCCCATCCCC
GACCTGAGCGGTGTTTGGTATATCGACAGAAGACATTGCTCAGAGTTAAC
TGGTTCCGGAGACACGTTATGTATGTTTTGATAAACATCCACTATCGGTG
TTGATGGTTTTTTCGCGTGCCACCCTGCTCACGCCGTCCTTATGATGGGT
GGGGCATTATTGTCTTTTGGCGTACGTACGTATGCATGTATGTATGTGTG
TATGTTTTTCGGTCCGAAACGTCACCACCGGTGCGATCGACACTGATTAG
TTGGCTGGTTTTTTTTTTCGGTGGTTGTCCAGGTGCGCTGCCCACCGGAC
GTTAGCGGCGGGAGCAGAATCATGGTGCTCGTGCCGCGGCAGCACCGACA
ACAGCAGTCCCGAAACGCGCAGGTGAGAGAGGACCACAGTCAGCAGGCGC
TCTGAGACTTAACTACCGAATCAAGGGAATGACAAGCATGCTTAGCTTAC
GCTTAACTCAACGAACAGCCCGCCAGTGGCCGCTACGTATTATCTACCGA
ATCAAGCGATTACAAGCATGCTTAACCTATGCTTAACTTGACGAAGAGCC
CGCCAAGTGGCTAGTATGTAGCTCGCAGGGTTCTTCGTGGTGCAGCGTCC
GCTGCTGGTACAGCTGCCGCAGCCAACTCGCGTCTCTGTTCTCGGAGCGC
TTGGGCGATTCTTCCGCGCCAGTAGATAAGTAGCATTGCCGTTCTTTGTG
TGGGCTGTTTTTGAAAATGCGATCTTCTTCGCATGAGCAGCGCAGAGCGG
TGGTGTGTGTTTCGACCGCCAGCGCTGCTCATCAGTGAATGAATGTGCCA
CACATTTTTTTGGAAGTTAGGTGTTGGCACGGCACAACCCCCTGCGCCTC
TTCTGGCCACACACGTTTTGCAAGCGTGCTGCCAACAGAGTCCACCTTGG
ACCAAGAGCACACCGCACCGATTCTACCGCCCATGCCCACCGGAGGACAA
CGGGCGTGAGTTTGCGCTCTCCCACACGACCGGGCTTGTCGGCAGCGAGG
GGCGAAATCCCTTTCGTCGTTCCTGACAGCCCCGCCCCCACTCCTCCGAC
CCCCGATAAGACGGGAAAAATGTCATGCATGGGCGAACGGCCCAGTGGGC
TGGTCGGATCAAGTACGACAGGTTTCAGAGACAACAGGCCATGGGGTGTC
TACACACAACATATTTGTATACTTGTACAAGTCTCCCTTTCAGACGTTGC
TCAAGGATACACACTCCAGAGGGTGAAGGAAGAGAGCAGACCAATCGTCC
GATACCTACATGTTTTCTGCCCGACTTGAAGCGTTTTCAACGATTTCAAA
TATAGTGAACACCGGGGGAAAGACACGAAAACGCCGAAAAAATGTTGCGC
CGACTTCGCGCGTGTGTGCATGTGTTAGTTTGGGTGTGTTCGCCGGAAAA
ATGAACAAAAACAGCAAGAGAAGATCAGCTAGATTACTTGTTGACTGCTT
GACCTGCTGTTGACTGCTGTTCGGGTTGCTTTACACTCTTGTTTGAAGTT
TCTGAGAGAAGTGTCAGCGCGACAACAGCTGCCACACTAAAGAACCACAA
CCCGCTTACGTCGTGCACGTTGGGATAAGAGGCGAGAACCACCGACCGTG
CGTGTCATGAACGTTACAGAAAAACTCTCCTGCCTTCATCTGTCTCGAAG
TAGTCGAGATAGGCGAAAAGTTATCGAGTGGGGGGCTTTGCGTGCGTGCT
CAACCTTACAGGGAGGGCTGTTTTTTGCCGTTGGTCGGCACATCATTGGA
AGAAAAGATCGCTGCAGGTTTGCAGGAAAGAGCTGACTGACGTTTGTCAT
CAGCAGCTGTTCAAGCTGTTCAAGCGGAGGGGGGCATAAAGCTCAAACAG
CCGGGCTGCTCGTAACGACCACAGTAACGACCACAGCTCCCGTAACGGTA
TCTAGACGTATTATATACATGCGGTTCCCATTGGAATCCAGCCCCCCCAC
CCCCCGCGCTCCGCTTGCGTGTCACGCATCCCCCGAAGGTGTATATGGCG
ACGGTTCCTCCCGGAGTCTCGCCGGGCGGGGAGTTCAACGTTATGGTGAA
CAGTCACCCGGTTCGCGTGGCGTGCCCCCCGAACGTGACGCCGGGGATGC
AGATCCGCATTCGTCTCGAGGAGCCCCAGGGGGCCCTGCACCAGACGTTC
GAGGTGGCGGTGCCGCAGGGGGTGCGGCCGGGGCAGCCGTTCGCGCTCAT
CGGTGGGTGGCAGCAGTGCTGGCGCCGGTGCTGATGTGTTGTTGGGGTGG
TTGCGGTGTATGTATGCACCACGGCCCTGGACTATTACTATTTAGTCGTC
TCGGGCTTGGCTGCCCGCGCGAAGTGGCGCCTTTGGTGTTGCCGTTCTGT
TGTTTTTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGCTTGGG
AAGGTAGTTGTGGAGTCAACCCCTCCGCCCCTCCCCGCGCGTACCTTTGT
GTACATAACCGTAACCGTTGGCCTCCTCTGCACTGTTTATGTTTTGTTAT
TTTGACAACAGCTGTAGTGGCCTCTGTGTTTGGTCCGCCTCGTTTTCACG
CATGGCATATGGGGCGGGGGGGGGAGGGGGGGGGCGAAGGTGTCTTCTAC
GGGGAGGAGGAAACACGACTAAGGAGCGGGTGCCTGTCTGCTGTTTCACG
CAGGGAGCGGCACCTGCCCGCATTCGCCGCCCCCCTGCTGTCTCTTAAAG
TCATTGCATTCCCACGTTTAAGTTTCCCTGCAGAACACTCCGTGGCCCCA
AGTCAAAAGTGTGTCTTTTTTTTCAAGTGTTTTTATTTTATATACTCGGC
CGGACCAAAATTACGCCACTACATCTATGTAATACCGGTTGAACCCCACG
GAGCCCCATCTTAAATGTGGGTCAGATTGTTTTTCATTATCTGATTAATC
TTTCAAGAATCTTATGTATTAGTTCCAAACCTCGATCTACTTTCGCTTGT
CCCCCTCGAGTGAGCATATAACCTCCCCCCCCCGGCGTCTTCTTTTCTTT
TTTCTTTTTTCTTTTCTCAGCGGGGGGGCAGCGCGTGATGGTGCACTGTC
CGCACGACGCCCGGCCGGGCCAGAAGATCCGGTTCCAGCTGCCCATCCAG
CTCAGCGAGGCTCAGCTGCAGACGTACAACATCCACTACTCCGGGAAGGT
GCGGGTGGTCTGTCTGCCTGTCTGCCTGTCTGCCTGTCTGTCTGTCTGTC
TTTCTGTCTGTCTGTCTGTCTGTCTGTCTGTTTGTCTGTCTGTCTGTGTC
TGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTTCTGCTCCGCCTGGTTG
ATGTCACTTTCGCTGTGTGCATGTTCAGGGTGGGAGCGCACCATCGGGGG
AGAGAGCGCGATAGTATACAGCCGGACACGCGCCCTAAATCGTTCAAGCA
GCAATGTTGTTGTGCATTTTGTTCACGCCCCCGCCTTCCCCGCGCGCTAG
AAAACTTCGCCGAGGGTAGATTACTCCGACCGACATAAACATGAATACTT
CTTGCGTAAAAAACTCTTCTTCTGCAAATGTATGTATGTATGTACGTACA
CAGCAGGCAGTAGCACGACACACCAGTTGCACAAACATTTTTTTTTGACA
TGGCGCGGTTTTTGACGTCCGCGGTGTGCGGTTGAAACGAATGATTTATG
GTCGCGAACTAAGCGACGACCCCAACCGCGAGACGGAAACCGGCCTTTTT
TTTTCTTTTTTCACGTTGATACATCGATGGGCTCCTTGCCACAAGGGCAT
CTTGCCAGAGTATTGAACCGTGGTCACACAGTGAAGGGTTTCTTTCCCCG
AGGCTTTTTTACCCGAGGCCCCCACTCCCCCCTCTCCTGCGACCAGCGCG
ACGGCCCAACCGACGGAAAATATGAATGAAAATGATGATGTCACGCAAAT
AATAATAATTTAATAACAGGATGGCTGGGTGAGGTGCGTCGGGACGGACC
TAAAGTTCCACTGGGTGCGGCATGACGAGGACGCCTCGGAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig8296:1084..8024-

>mRNA_L-elsbetiae_contig8296.17303.1 ID=mRNA_L-elsbetiae_contig8296.17303.1|Name=mRNA_L-elsbetiae_contig8296.17303.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1620bp|location=Sequence derived from alignment at L-elsbetiae_contig8296:1084..8024- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGAAACACGCCGCCGCAAGCACCAGCAGCTGGCCATGCTAGTGTCAG
TGCCGCATCGGGACCGGGTCGGAGGTTAGGTGCTAATTCCCCCCTCACCC
GACATATTGCGGCTGCTTCTTCCGCTCATAGAGCCGGCAGGACAAGGACC
GGCGGAGTTCCGATGGGAAACACGCCGCCGCAAGCACCAGCAGCTGGCCA
TGCTAGTGTCAGTGCCGCATCGGGACCGGGTCGGAGGTTAGGTGCTAATT
CCCCCCTCACCCGACATATTGCGGCTGCTTCTTCCGCTCATAGAGCCGGC
AGGACAAGGACCGGCGGAGTTCCGGCGGAGCAAAATCCCGGGGCGTACTC
CATTCCTGGGGCCGGAGGGCGCAACCAAAACGACTCCATACCGTACACGG
TAACGGTCCCAAATGGAGTTCGGCCAGGACAGGAGTTCCAGGTCATGGCT
GGCGGTTTGCCAATGGTGGCGGAGCAAAATCCCGGGGCGTACTCCATTCC
TGGGGCCGGAGGGCGCAACCAAAACGACTCCATACCGTACACGGTAACGG
TCCCAAATGGAGTTCGGCCAGGACAGGAGTTCCAGGTCATGGCTGGCGGT
TTGCCAATGGTGGTGCGCTGCCCACCGGACGTTAGCGGCGGGAGCAGAAT
CATGGTGCTCGTGCCGCGGCAGCACCGACAACAGCAGTCCCGAAACGCGC
AGGTGCGCTGCCCACCGGACGTTAGCGGCGGGAGCAGAATCATGGTGCTC
GTGCCGCGGCAGCACCGACAACAGCAGTCCCGAAACGCGCAGGTGTATAT
GGCGACGGTTCCTCCCGGAGTCTCGCCGGGCGGGGAGTTCAACGTTATGG
TGAACAGTCACCCGGTTCGCGTGGCGTGCCCCCCGAACGTGACGCCGGGG
ATGCAGATCCGCATTCGTCTCGAGGAGCCCCAGGGGGCCCTGCACCAGAC
GTTCGAGGTGGCGGTGCCGCAGGGGGTGCGGCCGGGGCAGCCGTTCGCGC
TCATCGGTGTATATGGCGACGGTTCCTCCCGGAGTCTCGCCGGGCGGGGA
GTTCAACGTTATGGTGAACAGTCACCCGGTTCGCGTGGCGTGCCCCCCGA
ACGTGACGCCGGGGATGCAGATCCGCATTCGTCTCGAGGAGCCCCAGGGG
GCCCTGCACCAGACGTTCGAGGTGGCGGTGCCGCAGGGGGTGCGGCCGGG
GCAGCCGTTCGCGCTCATCGCGGGGGGGCAGCGCGTGATGGTGCACTGTC
CGCACGACGCCCGGCCGGGCCAGAAGATCCGGTTCCAGCTGCCCATCCAG
CTCAGCGAGGCTCAGCTGCAGACGTACAACATCCACTACTCCGGGAAGCG
GGGGGGCAGCGCGTGATGGTGCACTGTCCGCACGACGCCCGGCCGGGCCA
GAAGATCCGGTTCCAGCTGCCCATCCAGCTCAGCGAGGCTCAGCTGCAGA
CGTACAACATCCACTACTCCGGGAAGGATGGCTGGGTGAGGTGCGTCGGG
ACGGACCTAAAGTTCCACTGGGTGCGGCATGACGAGGACGCCTCGGACGA
TGGCTGGGTGAGGTGCGTCGGGACGGACCTAAAGTTCCACTGGGTGCGGC
ATGACGAGGACGCCTCGGAC
back to top