mRNA_L-elsbetiae_contig8295.17301.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8295.17301.1
Unique NamemRNA_L-elsbetiae_contig8295.17301.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8295.17301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8295contigL-elsbetiae_contig8295:694..4498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size265
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816913.0122058-CDS-L-elsbetiae_contig8295:693..8421622816913.0122058-CDS-L-elsbetiae_contig8295:693..842Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8295 694..842 +
1691683907.5044749-CDS-L-elsbetiae_contig8295:693..8421691683907.5044749-CDS-L-elsbetiae_contig8295:693..842Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8295 694..842 +
1622816913.027506-CDS-L-elsbetiae_contig8295:4382..44971622816913.027506-CDS-L-elsbetiae_contig8295:4382..4497Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8295 4383..4497 +
1691683907.5166698-CDS-L-elsbetiae_contig8295:4382..44971691683907.5166698-CDS-L-elsbetiae_contig8295:4382..4497Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8295 4383..4497 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8295.17301.1prot_L-elsbetiae_contig8295.17301.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8295 694..4497 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8295.17301.1

>prot_L-elsbetiae_contig8295.17301.1 ID=prot_L-elsbetiae_contig8295.17301.1|Name=mRNA_L-elsbetiae_contig8295.17301.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=88bp
ASCAALLSVDCGGMKVLFFATALCYLLHSRLAFSFCPGSVGSVMTARNQR
PGRFYAMTAAAGGFRQQNQQNTAALQEEGLGLSSGGGS
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mRNA from alignment at L-elsbetiae_contig8295:694..4498+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8295.17301.1 ID=mRNA_L-elsbetiae_contig8295.17301.1|Name=mRNA_L-elsbetiae_contig8295.17301.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3805bp|location=Sequence derived from alignment at L-elsbetiae_contig8295:694..4498+ (Laminarionema elsbetiae ELsaHSoW15)
GCCAGCTGTGCTGCTCTGCTCAGTGTGGACTGTGGAGGGATGAAAGTTTT
GTTCTTCGCAACAGCGCTCTGCTACTTGCTGCATTCTCGGCTGGCTTTTT
CGTTCTGTCCGGGATCCGTGGGATCCGTGATGACCGCTCGAAACCAAAGG
TGTGTTTCGTCGAGACTTCCCTGTCGAGATACGCTACAACTGCAATGCCA
TACGTAATTAACTACTGCTGTTGCTCTAGCGAACTGGCGGTACTGCTGTG
TTGGGACGACTACCAACAAGAGGGCATCAGAACTGCGTCATGATGACGGC
AGTGGGAAGTGACTGCTTGCGCTTTACGTTCAGTACTCCCCGCTCATATA
GTACTGGGGTACGGAAAGCCCCCCCCCGCCCCAAATGGGCGTCAAAATCA
CAGGGTGGAGGAATCCAACATATCCGATAATGATGTAAGCTAAATTGTAG
CAGTAGGTGATGAGAGAATGGAGATGATGGCGCCGGGGCGAAGAGCGCAT
ATCTTCAATGTCCAAGGAGGAGAGCGTGGTGCGCCAAAGCAGATTAACGA
TGGTGTGCCGCTACATACCTGGTACTATGTAGTAGATAGAGACAGCAATA
CAGCGCACGGGGAAGATATGAAACCCCGCGCAGACCGGCCCATATGCCCT
TCCCTGCCCAACCAAGCGCGGCGAAGCACGAAGCCAACCGTACCCCTACA
TAATTACCCAGCACTTGACAACCCCAACCAAGTTGACACAACTCAAGCAT
AACTTTCAACGCCAGCCGATCCAGCGCGGTGAAAAAGCAATACCAACGAT
ACTAAACCAACGATACTCAACCCAACCCCAACGTGAAATAGGATTCAACA
GACCGCAGAGCGCGCCCAGCACGCACACCAGCGTCCCAACAGAATCGAAT
CCAACCCAACTCCCGATACGCTCGAGAAAAACCCTTTATCGGAAACGTGG
AATTATATTTTTCCTCGGAAAATTCCATGGGTCGTAACTGAACGAGTCAC
TTCGTTGAACATCCACCAAGCACGGTGTTTTACAAAGGAGTTGATCCCAT
ATAAGACTGACACGATACGCGTTGCAAGCGACGTCGCCTGTTGATATTGT
GGAGTACACGATCACGTTGTCCGCTGCTGCATGCAGCTGATTCGTGAATA
CAATACAGATGGCACAATTTCTACATAGCTATGTCCTTCTCCGCTGCTAC
CTGAAGCCGTGCTGGTCACACGCTGCTACCATGCCTGGGTGTCTTTGACA
AAGGGGCTGACCCCATGTACGACCGATACGATACGTGTTTCAAGCGATGT
GGACTGCTGTTGACGTTGCAGAGACACACGTTTGTTCCCGCTGCCGCTGA
ATGCAGCTGTGATTCGTGTGTACAATGTCTACAGCAGACATGCCCTCCTC
CTCTGATCCCTCTAGCCGTGCTGGTAACACACCGCTGCCATACACGGGAG
TGTTTGGAGGAAATGGTGGTCTCCTGAACTCGTTCGTTTTGATAAAATGG
TCTTGTTCAATCTCACACGGACGAGGGAGCCGAGAGAAAAAAAAACACAA
AAAAACAATCGTGCCTACAAGTACTGTATTTCCTAGTAGTACGACGTACG
ATTCTTAAATAGTTAATTATGCAGGGTGATGTTGCAGTGGTAAATACATA
GATAAAACTATACTGCTGGGGTGCATTAGACTATGTATGGACATATGCAG
ACACATACATGACTTCGTGTCGGAGCCTCGAGCGTTCAAGGATGGGTGTC
CCTGCACTCTCGGCGCTCTAGGGCTATTTTTTTACTATTTTTCCGCTGCT
AGACCTCGTCTCAAGGCCGGCCTTGCGGCTATCGGTATGTTAGATGGCTC
TGTGCTCCAGACGCTCTCCGAAGTGGAAGATATCGCCGTTCAACAAAGAT
ACGGTTACCGGTAAACAAATAGCTCTCCGCAGCAGGTGTACTAGCCCGCA
CACTGATTTACGTAATAGAGCGTGGTAGCTCGGGGCGTAGTAGCCTTAGG
CGTGGTAGCCTCGTACTCTGTACTGCATGGGCATGTAGCCCCCTGGGCGC
GGTAGCCCGTATACGTGCATGGGCATGTAGCCCCTTGGGTGTGGTAACCC
GGAATACCCCTATGGTTGGGCCTATTAGCCCGAGGCCTGGTAGCCTGCTC
CGTATAGACATGGGCGTAGTATGTAGCCCTCGACGTGGTAGCCGGGATAG
GACTGAGTTAGCTCACCGCATAGACACCGAACATGGGACACGCAGACGCA
CACCACAGCGCACCACAGCACTTACGTGCGTGGCGGAGAGGCATCCCAGA
AAACCAGAACCAAGGCAAGTTGGTACCTCCAAATCCAGTTCCATGACAAA
CGCGGAACCCCCAAACCCCCCCGCACCGTCTCGTCGTAGATTCTCTGCAA
GATATGACAATGCTGCGAGTACACCTAACACGGTAGACCTGACTTGCGAA
GGCCTGGCTCGTGTGCGGCCCCCTCTCAGGGTGACCATCACGCAGCGATA
GCGCGGGCGCAAAATCACATCTCCGATATCTCCCAGGGACCGTCCAATTA
CAGCCCCGTTTATTAATTTAACAGCGGTCCCGTTTTCCTACATACATGCA
GCAGCAGTCGATCTTCGCGTTGAACTTTTCGGGGTTCGTTACTGCGAAGA
CGAGCTCGCGATATCTCGACCGTGTGCGAGGGTCGCAACCCCGCGCGAAG
GTCGCAGCGCCGCGCGCACGAGTGCAACGCTATGGTCGTACTTGCTTTTT
AACATTTCGTAGCGGTCGGCAGAACTAACTCACTACTTAATTTGCCAAAT
GTATTTGACAGCGGTTGTTGACACGCTTCGTAACCCCACAGGACCCAAGG
TTTGATAGAAGACATGGCGCGAATGGCCGTAAGCTGAGGCTAGTGCCTCG
GCGGAAGTCCGGCATTACTCACGGCACGCATGCGAAGTGCGAAGTACCGT
GCGTAACAATCGTTGCTAGGTAACTCTTCTGTCGCTCTTTTGGCGTGGGT
GGATTTTAAAGGACGCAGCCAGCGTCTACACACACACGTGTGTGTATCTT
ACGTTGCAGCGAGCGTTTTTTTTTTTACTATCTCGGGCGATCAATTTCTG
TAGATGTATAGGCAAATAAGCACTTGGCGTCGTCCTGCAACCTACAAGCG
TAGCGGCAGCCCGCGTCAGCGGGCCGCTGCGAAGCGCCCTTATACATGCT
TACATACATACATACATACATACATACATACATACATACATACATAGGCA
TAGGTACGCTGGCGTTCCCCAAGACCTCATAGCAGTATCAGGGATAAGGC
GATAGAAATCCCTCCCGACGAAAGAGTTGTCTCAACAGGTCGATCTCCAC
CCACTCGCCTCTGTCTACGAAAGCCGCACGGTAACGCCCTCCCTCCCCAG
TGGCCCCTCATTGCTTGTGCCCCCCTTCATGACTCACGTATGTACGTACG
GTATGATATTTTCGGCGCGTGCGTGCCATCTCGCAGTCCACGGCTCCCCC
CGACGAGCATGATTATTCGATCAATATGGTCGGTTTCGCTCGCACATCAC
ACCTCTCAAGCCACATTTCGTTTGGCCGGTGGCACAAGAGAGCAACGGAG
GAGTACGGTAGGTAGTAGTTAGCTTGCGCCTCCGAGACGCGAAACCTGTC
ACCGAACCCCTTGGCGCCTGAAAACGTTTGCATCCGCAGGCCTGGGCGTT
TCTACGCCATGACTGCTGCTGCTGGCGGTTTCAGGCAACAAAACCAACAG
AATACCGCCGCGCTACAAGAGGAAGGCTTGGGCTTGAGCTCAGGCGGTGG
AAGCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8295:694..4498+

>mRNA_L-elsbetiae_contig8295.17301.1 ID=mRNA_L-elsbetiae_contig8295.17301.1|Name=mRNA_L-elsbetiae_contig8295.17301.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=528bp|location=Sequence derived from alignment at L-elsbetiae_contig8295:694..4498+ (Laminarionema elsbetiae ELsaHSoW15)
GCCAGCTGTGCTGCTCTGCTCAGTGTGGACTGTGGAGGGATGAAAGTTTT
GTTCTTCGCAACAGCGCTCTGCTACTTGCTGCATTCTCGGCTGGCTTTTT
CGTTCTGTCCGGGATCCGTGGGATCCGTGATGACCGCTCGAAACCAAAGG
CCAGCTGTGCTGCTCTGCTCAGTGTGGACTGTGGAGGGATGAAAGTTTTG
TTCTTCGCAACAGCGCTCTGCTACTTGCTGCATTCTCGGCTGGCTTTTTC
GTTCTGTCCGGGATCCGTGGGATCCGTGATGACCGCTCGAAACCAAAGGC
CTGGGCGTTTCTACGCCATGACTGCTGCTGCTGGCGGTTTCAGGCAACAA
AACCAACAGAATACCGCCGCGCTACAAGAGGAAGGCTTGGGCTTGAGCTC
AGGCGGTGGAAGCGCCTGGGCGTTTCTACGCCATGACTGCTGCTGCTGGC
GGTTTCAGGCAACAAAACCAACAGAATACCGCCGCGCTACAAGAGGAAGG
CTTGGGCTTGAGCTCAGGCGGTGGAAGC
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