mRNA_L-elsbetiae_contig829.17299.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig829.17299.1 vs. uniprot
Match: D7FQ32_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ32_ECTSI) HSP 1 Score: 759 bits (1961), Expect = 2.630e-259 Identity = 500/792 (63.13%), Postives = 580/792 (73.23%), Query Frame = 3 Query: 168 VAVMVGDLKDVQKYIKHGGDLEVPDDDRATAIFHAACWNHIEIMKALISAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRECEGTGVDRQ------EDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRS---SSAKSPSRPSDGRXXXXXXXXXTNRNRSGAHNGGGGSQGQAGGNMESGGAKAHFRVAHPPTIRGGGQWQPMTAYLFEPSAHQAVRHAHEDIINGNQHHAFVPSDETNSVEDSEKTIPLGTQVVIRPRFPRGFCISPVNATVEWTKDAHAVPFELRPPATISTGSVSGCVDFYVGPVLVGQAYVEMAVGKPNDRSNATDKPSVLGPVTKAFDTVYMCFAVADEPLLLPSLERFKRLDIINIAWRPEREGNERESRRLIRESSVFQICWSIFAKESNRVREEVKYASSLAKAGSVAVRGIYWDPSMDATSIQTAQGLVFPVRLHNSFLLEDPRIFLAEHAADAMSS-------------------EAGDESHDAV--PEVEKLCTPAVEHTRGHISRLRGMVDGADAVDVPRVVWIHPDDCGSKPGSIDITTDDWLKKPIRLNFLCPISMKPGRCGEDGKGYKMSFPRGWSSKIGLTLKIGVVVVAAASDAGEVADLPAPSPAAVAVWGEGEDGGGRSSAERQGDLVNAAFDGLAGAVSDKSNDMVDSAFMDAESEEGDSPPPAAQMRKEAKHSYANLRSLL-QKYDKGLKMTGLVKVTHEGTAGAS 2450 +AVMVGD + V+K+I GDL+ DDD ATA+FHAA W H+EI K LIS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PR+CEGTGVDRQ +D XXXX R SS KSP+RP D R T+RNRSGAH G G+A N+++ +AHFR A+ PTIRGGG+W PMTAYLFEPSAH AVR+AH+ I+G+QHH FV SD N+VED +KTIP GTQVV+RPRFPR C+SPVN+TV W KD HAVPFE+RPPA+ S+G++SG VDFY+G VL+GQA+VEM+V KPND S A DKP VLGPV KAFDT+Y+CFA AD+PLL+PSLE F RL I NI WRPE +GNE++++RLIRESS+FQICWS+ AKES+RVR EVKYASSLAKAGS+AVRGIYWD +MD TSIQTA GL+FPVR+HNSFLLE+ FL + AAD SS + GD + AV P VEKL T AV+HTRGH+SRLR MV GA+ VD PR+ WI+PDD G KP S+DITTD+WLKKPIRL FLCPISMKPG CG+DG+GYK+S PRGW SKIG+ LKIGVVVVAAASDA EVA LP P +AV+ WGE +GG +S + QGDLVNAAFDGLAGAV DK ND++DS FMDAE+E + P AQ+ KE K SY NL SLL QKYDK K VK+ + GT G+S Sbjct: 1 MAVMVGDRRAVKKFINGSGDLDEKDDDGATALFHAAFWTHVEIAKDLISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGASSEVLNHMGQTPRQCEGTGVDRQPDGENFDDXXXXXGPRGSGAVSEAPSAGDESTVVGDPGVQDRDAGFSSGKSPNRPHDERSAAASSSPRTSRNRSGAH---AGDTGRAKENVDAASTRAHFRAAYRPTIRGGGKWHPMTAYLFEPSAHSAVRNAHQARIDGDQHHPFVDSDNGNAVEDCDKTIPPGTQVVVRPRFPRTCCVSPVNSTVVWMKDVHAVPFEVRPPASTSSGTISGYVDFYIGAVLIGQAHVEMSVVKPNDSSGAADKPDVLGPVAKAFDTMYVCFAAADKPLLIPSLEWFNRLGIFNIVWRPE-DGNEKDTKRLIRESSIFQICWSMSAKESDRVRHEVKYASSLAKAGSLAVRGIYWDSTMDVTSIQTAHGLMFPVRMHNSFLLEEACAFLLDRAADTASSTPETATGALAGGGQSARVEDDGDHNDGAVAVPNVEKLNTAAVQHTRGHVSRLRDMVGGANEVDCPRLAWIYPDDSG-KPRSVDITTDEWLKKPIRLVFLCPISMKPGWCGQDGRGYKISLPRGWGSKIGMALKIGVVVVAAASDADEVAGLPLPPVSAVSSWGEDGEGG-KSLTQMQGDLVNAAFDGLAGAVPDKWNDLIDSTFMDAETETS-ARPATAQLCKEVKQSYKNLSSLLHQKYDKVCK----VKI-YTGTGGSS 780
BLAST of mRNA_L-elsbetiae_contig829.17299.1 vs. uniprot
Match: A0A6H5JCB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCB7_9PHAE) HSP 1 Score: 205 bits (521), Expect = 1.130e-56 Identity = 134/236 (56.78%), Postives = 156/236 (66.10%), Query Frame = 3 Query: 2058 LTLKIGVVVVAAASDAGEVADLPAPSPAAVAVWGEGEDGGGRSSAERQGDLVNAAFDGLAGAVSDKSNDMVDSAFMDAESEEGDSPPPAAQMRKEAKHSYANLRSLL-QKYDKGLKMTGLVKVTHEGTAGASSTTEWVHPSVAELFRRKGPAIFDRGALAAADGEAALEAAVRHKAAMTQKRGPGAASSAPGCREKGGMVSKGQVPDVMRTLRVLENQVLALVENQGAGGVSGGGA 2762 + LKIGVVVVAAASDA EVA LP P AV+ WGE +GG +S + QGDLVNAAFDGLAGAV DKSND++DS FM+AE+E +PP AQ+ KE K SY NL SLL QKYDKGL+ KVT+ G+ G S TTEWVHPSVAELFR +GP++F GALA AD +AA EA RHK QK+ + PG DVM TLR+LE QVLA+ G G GGA Sbjct: 1 MALKIGVVVVAAASDADEVAGLPLPPATAVSSWGEDGEGG-KSLTQMQGDLVNAAFDGLAGAVPDKSNDLIDSIFMNAETETS-APPATAQLCKEVKQSYKNLSSLLHQKYDKGLE-----KVTYAGSRGTSPTTEWVHPSVAELFRSQGPSVFGAGALATADADAAREAVRRHK---EQKKRSSDGGNRPGSE------------DVMSTLRLLEKQVLAMA---GGGARGSGGA 211
BLAST of mRNA_L-elsbetiae_contig829.17299.1 vs. uniprot
Match: F0Y427_AURAN (Flavodoxin-like domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y427_AURAN) HSP 1 Score: 80.9 bits (198), Expect = 1.380e-11 Identity = 67/228 (29.39%), Postives = 109/228 (47.81%), Query Frame = 3 Query: 1794 VEHTRGHISRLRGMVDGADAVDVPRVVWIHPDDCGSKPGSID--ITTDDWLKKPIRLNFLCPISMKPGRCGEDGKGYKMSFPRGWSSKIGLTLKIGVVVVAAASDAGEVADLPAPSPAAVAVWGEGEDGGGRSSAERQGDLVNAAFDGLAGAVSDKSNDMVDSAFMDAESEEGDSPPPAAQMRKEAKHSYANLRSLLQKYDKGLKMTGLVKVTHEGTAGASSTTEWVH 2471 V+ TRG L + +DA + P++VW+ + K ++ +T W KP+R+ F+CP++M+ + G+DG GY++ P+ W K G+ + + + V+ A G + G A ++ A A + ++ N +D A DA E+G P + EA S+ L+ L+K D GL +TGLVKV G +GA+ TEWVH Sbjct: 1095 VDATRGQTRLLMDLC--SDATECPKLVWMARE----KEAAVTRWLTPSSWYGKPVRVQFVCPVTMQVAKSGKDGGGYRVVLPKDWIKKWGVAVNLSLTVLRVAMQLGAASM-------------------GCYHAHVPDMTIDRARLKTADELYEEVNKGLDPATRDA-LEKG---APECKALSEA--SFQMLKGELKKEDPGLDLTGLVKVV--GGSGATLCTEWVH 1289
BLAST of mRNA_L-elsbetiae_contig829.17299.1 vs. uniprot
Match: A0A3N5ULI4_9CHLR (Toll/interleukin-1 receptor domain-containing protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3N5ULI4_9CHLR) HSP 1 Score: 66.6 bits (161), Expect = 1.470e-7 Identity = 46/195 (23.59%), Postives = 90/195 (46.15%), Query Frame = 3 Query: 1026 VEDSEKTIPLGTQVVIRPRFPRGFCISPVNATVEWTKDAHAVPFELRPPATISTGSVSGCVDFYVGPVLVGQAYVEMAVGKPNDRSNATDKPSVLGPVTKAFDTVYMCFAVADEPLLLPSLERFKRLD---IINIAWRPEREGNERESRRLIRESSVFQICWSIFAKESNRVREEVKYASSLAKAGSVAVRGIYW 1601 V S I GT++ I P G +P V W ++ H F +++T G ++FYVGP++VG M +P+ ++ D+ + V + +++ ++ D ++L + ++ L +I+I + E +I +++FQ+ WS +K+S ++E K+A G +R +YW Sbjct: 235 VISSTTRITRGTEITIIPSCD-GLVFNPDRIVVRWMENYHRADFRFWADKSLATDVAKGQINFYVGPIMVGNLKFAMLFNEPDSQTFREDE---IHAVMYRQEDIFVSYSHKDSAIVLACKKAYQALGFNVLIDIETLRSGQLWNEELAHMIDNATIFQLFWSENSKKSKYCKQEWKHALKRNTQG--FIRPLYW 423 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig829.17299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig829.17299.1 >prot_L-elsbetiae_contig829.17299.1 ID=prot_L-elsbetiae_contig829.17299.1|Name=mRNA_L-elsbetiae_contig829.17299.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=881bp MRPKTSKIEDEVDLQVAVMVGDLKDVQKYIKHGGDLEVPDDDRATAIFHAback to top mRNA from alignment at L-elsbetiae_contig829:20696..29601+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig829.17299.1 ID=mRNA_L-elsbetiae_contig829.17299.1|Name=mRNA_L-elsbetiae_contig829.17299.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=8906bp|location=Sequence derived from alignment at L-elsbetiae_contig829:20696..29601+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig829:20696..29601+ >mRNA_L-elsbetiae_contig829.17299.1 ID=mRNA_L-elsbetiae_contig829.17299.1|Name=mRNA_L-elsbetiae_contig829.17299.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5286bp|location=Sequence derived from alignment at L-elsbetiae_contig829:20696..29601+ (Laminarionema elsbetiae ELsaHSoW15)back to top |