mRNA_L-elsbetiae_contig829.17297.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig829.17297.1
Unique NamemRNA_L-elsbetiae_contig829.17297.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig829.17297.1 vs. uniprot
Match: A0A6H5JDG1_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JDG1_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 2.070e-11
Identity = 35/47 (74.47%), Postives = 39/47 (82.98%), Query Frame = 3 
Query:  222 VDLGSLASMMGNGDFHAGLDAVRNWSDLLPLGEQQRPAFARLLHKNP 362
            VDLG LA MMG+GD HAGL AVR+WSD+L LGEQQR AFARLL+  P
Sbjct:  678 VDLGRLAVMMGSGDAHAGLGAVRDWSDMLSLGEQQRLAFARLLYNKP 724
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BLAST of mRNA_L-elsbetiae_contig829.17297.1 vs. uniprot
Match: A0A835ZDB9_9STRA (Putative ABC transporter Nda n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDB9_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 7.980e-8
Identity = 30/47 (63.83%), Postives = 37/47 (78.72%), Query Frame = 3 
Query:  222 VDLGSLASMMGNGDFHAGLDAVRNWSDLLPLGEQQRPAFARLLHKNP 362
            V L  LAS+ G+GD HAGL +V++WSD+L LGEQQR AFARLL+  P
Sbjct:  481 VGLPDLASLSGDGDEHAGLWSVKDWSDMLSLGEQQRLAFARLLYNEP 527
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig829.17297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JDG1_9PHAE2.070e-1174.47ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A835ZDB9_9STRA7.980e-863.83Putative ABC transporter Nda n=1 Tax=Tribonema min... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig829contigL-elsbetiae_contig829:897..2764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.2
Seed ortholog evalue2.4e-10
Seed eggNOG ortholog2880.D7G4W0
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.ATP-binding cassette sub-family D
EggNOG OGsCOG4178@1,KOG0060@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size485
Cds size243
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig829.17297.1prot_L-elsbetiae_contig829.17297.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig829 1070..2695 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816912.3755195-UTR-L-elsbetiae_contig829:896..10691622816912.3755195-UTR-L-elsbetiae_contig829:896..1069Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig829 897..1069 +
1691683907.0358505-UTR-L-elsbetiae_contig829:896..10691691683907.0358505-UTR-L-elsbetiae_contig829:896..1069Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig829 897..1069 +
1622816912.4277043-UTR-L-elsbetiae_contig829:2695..27641622816912.4277043-UTR-L-elsbetiae_contig829:2695..2764Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig829 2696..2764 +
1691683907.0778615-UTR-L-elsbetiae_contig829:2695..27641691683907.0778615-UTR-L-elsbetiae_contig829:2695..2764Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig829 2696..2764 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816912.3872354-CDS-L-elsbetiae_contig829:1069..11171622816912.3872354-CDS-L-elsbetiae_contig829:1069..1117Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig829 1070..1117 +
1691683907.0496628-CDS-L-elsbetiae_contig829:1069..11171691683907.0496628-CDS-L-elsbetiae_contig829:1069..1117Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig829 1070..1117 +
1622816912.398388-CDS-L-elsbetiae_contig829:2071..22521622816912.398388-CDS-L-elsbetiae_contig829:2071..2252Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig829 2072..2252 +
1691683907.0606914-CDS-L-elsbetiae_contig829:2071..22521691683907.0606914-CDS-L-elsbetiae_contig829:2071..2252Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig829 2072..2252 +
1622816912.4159422-CDS-L-elsbetiae_contig829:2681..26951622816912.4159422-CDS-L-elsbetiae_contig829:2681..2695Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig829 2682..2695 +
1691683907.0691526-CDS-L-elsbetiae_contig829:2681..26951691683907.0691526-CDS-L-elsbetiae_contig829:2681..2695Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig829 2682..2695 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig829.17297.1

>prot_L-elsbetiae_contig829.17297.1 ID=prot_L-elsbetiae_contig829.17297.1|Name=mRNA_L-elsbetiae_contig829.17297.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=81bp
MMTSAAEGVESEEKNGVDLGSLASMMGNGDFHAGLDAVRNWSDLLPLGEQ
QRPAFARLLHKNPAHPRHPRRVHVHSGAYE*
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mRNA from alignment at L-elsbetiae_contig829:897..2764+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig829.17297.1 ID=mRNA_L-elsbetiae_contig829.17297.1|Name=mRNA_L-elsbetiae_contig829.17297.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1868bp|location=Sequence derived from alignment at L-elsbetiae_contig829:897..2764+ (Laminarionema elsbetiae ELsaHSoW15)
CGCACACCTGACGCACACACAGGAGTAGGCAAAGCTCAGCGCTGTGGGAC
GGACCGCACTCATTTTGTTGTGCCGGGAGGGCTGTGGTTAGCGGCTGGAT
ACCCCGGCAGCGGCAGCGGCAGCAGCAGTAGTTGGCATGGGTTCGACAAG
CAAGCGTCGAGCCGTGTCTTTGCATGATGACCTCCGCGGCAGAAGGAGTC
GAGTCAGAAGAAAAAAACGGTGTGAGTGCTGGTGTGCAAGCGCGCGCGCG
TGTTTATGTGTTTATATTGTTTCTCGCTCGACTCTCAATTCTCCATTCTC
AATTCCCAACACGGACGGTCGGCCTGGGTGATATATTCTGGCCTGCGGCT
GGGTCTACTTCTGTATGCCGGTACCCAGCCTATCTACACACGTAGTTTAT
AACCCCGACAGCGGTGTACGCTACAGCAGCACAGAGTTTATATCTGGTGT
GTTATGACATATACCGTTAAAGAGTCGGGGTATTAGCACTGCACAGGCTT
GCAAAAAAAAAAGCGGGTTCAAGATGATGTAATTCGTAATTCGGTAGACT
GCAGCCGTGTAGATATTTAGTTCAGTTTGAAAGATAAAACAATTAATCAA
AAATGGAACCTAACCCACATTAAGACGGGACTCCGTGAGATTCAGTTCTC
ACGCACACGCCGTGAACCTCTGTAGGGGAAGTTCGATGCACCCTTCATTC
CTGCTGTGTGCGTTTCGGATCTTCTTGTGGCTCCAGCACTTTTGAGACCA
CAGGCTGCTGTGATTTCGGTGATTTTGCTACACATGTATCTAGATTCTGT
GATCAGAAGTGATTTGCGATTTCGGTTCCACGAGCAAGTGTGAGAAACAA
CAACGCACTGCTGTTGCATCGCGGCTCCACCGCCAGCACTACCCCTGCCC
GCTCTTGTTGCGTGTTTCCGCTCGGGGGTGCATGCTACTGTACGCTGTAA
TTTACCTCGTAGAAAGTCGCCGCAAAGCTTGGATATACATGGGTTTTTAG
CCGGGCTCGGTGGGTGCGGGTGCATTCAGAAGCACGTCAGCATTGTGGCT
ACGTCTCCAGCAGTGCTCCGGGACGTATGTACGTCTATATGTACATACAC
ACACTGCCGACGTTTTACATTGCAAGGAAAAATGTCGTTTTTGTTTTTGT
TTTGTTAAAAACAAATTCCTCACAGGTCGATCTCGGGAGCCTTGCTTCGA
TGATGGGTAACGGCGACTTCCACGCAGGGCTTGATGCCGTCCGGAACTGG
TCCGACCTACTGCCGCTCGGGGAGCAGCAGAGGCCAGCGTTCGCGCGGCT
GCTGCACAAAAACCCTGCCCACCCTCGCCACCCTCGACGAGTCCACGTCC
ACTCTGGTGAGATTGACAGATCATCAAAGACAATATTGTACTGATGAAGT
ATTGGTGTGTGTAAAGGTCAAGCTGTAGTTGTGTGTGTGTGCGTGTGTTT
TGAAAGCAAACCAGTGAATCAAAAACGGGACCTATTGGGTTTTGATTGGA
TCTACAATTGCCGGATATTTAGCAAATGAAACATGGAGTGGTATTGATCA
TGAAAAGATCACGACTCGCCAAGCTTATTACGTTTGGCTCTGTGTTACCG
CTTGGGGGAAGAGTGACGCACAGCGGTGTCTTTTTAAAACCTCTGCCGTA
CTTCCTCTTACCGCACTTCCCTTCTATGTAGCTTGGCTCTTGGCTGACAA
CGCGGAGCAATTCCCATGCCTGACCCCCACCGCACGAACACACAATTACA
CCACGGCACCCCCATCACACCACACGCACACGCAGGAGCTTACGAATGAG
GAGCGGGTGTTCGCCCTCCTGGACACCTTCCCTAATATATCGGTCGTAAA
CGTGGGGCACCGGCCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig829:897..2764+

>mRNA_L-elsbetiae_contig829.17297.1 ID=mRNA_L-elsbetiae_contig829.17297.1|Name=mRNA_L-elsbetiae_contig829.17297.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=486bp|location=Sequence derived from alignment at L-elsbetiae_contig829:897..2764+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGACCTCCGCGGCAGAAGGAGTCGAGTCAGAAGAAAAAAACGGTAT
GATGACCTCCGCGGCAGAAGGAGTCGAGTCAGAAGAAAAAAACGGTGTCG
ATCTCGGGAGCCTTGCTTCGATGATGGGTAACGGCGACTTCCACGCAGGG
CTTGATGCCGTCCGGAACTGGTCCGACCTACTGCCGCTCGGGGAGCAGCA
GAGGCCAGCGTTCGCGCGGCTGCTGCACAAAAACCCTGCCCACCCTCGCC
ACCCTCGACGAGTCCACGTCCACTCTGGTCGATCTCGGGAGCCTTGCTTC
GATGATGGGTAACGGCGACTTCCACGCAGGGCTTGATGCCGTCCGGAACT
GGTCCGACCTACTGCCGCTCGGGGAGCAGCAGAGGCCAGCGTTCGCGCGG
CTGCTGCACAAAAACCCTGCCCACCCTCGCCACCCTCGACGAGTCCACGT
CCACTCTGGAGCTTACGAATGAGAGCTTACGAATGA
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